Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.0e-63 246.5 117 100.0
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.2e-58 228.8 117 92.3
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 6.3e-58 227.3 115 93.9
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 4.2e-54 214.5 115 87.0
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 2.1e-53 212.2 117 84.6
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 5.2e-52 207.6 119 82.4
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 5.7e-51 204.1 119 81.5
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 2.2e-47 192.2 110 81.8
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 6.5e-47 190.7 117 76.9
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 3.6e-45 184.9 111 79.3
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 8.8e-44 180.3 117 68.4
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 4.4e-43 177.9 118 68.6
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 2.8e-42 175.3 117 67.5
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 3.7e-42 174.9 118 68.6
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 4.8e-42 174.5 117 67.5
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 6.3e-42 174.1 117 67.5
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.8e-41 172.6 117 65.8
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 9.1e-41 170.2 117 66.7
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.0e-39 166.8 117 65.8
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.0e-39 166.8 117 65.8
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.7e-39 166.0 116 62.9
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 1.5e-38 162.9 117 64.1
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.8e-36 154.1 113 64.6
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.6e-35 152.1 121 61.2
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.6e-35 152.1 113 63.7
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 3.4e-35 151.8 120 60.8
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 7.5e-35 150.6 120 60.0
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 7.5e-35 150.6 120 60.0
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 7.5e-35 150.6 120 60.0
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 7.5e-35 150.6 120 60.0
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 9.8e-35 150.2 121 60.3
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 9.8e-35 150.2 120 60.0
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 9.8e-35 150.2 120 60.0
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.3e-34 149.8 120 59.2
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.7e-34 149.4 120 60.0
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.2e-34 149.1 120 60.0
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 2.2e-34 149.1 117 58.1
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.8e-34 148.7 121 61.2
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.8e-34 148.7 120 59.2
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 3.7e-34 148.3 120 58.3
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 4.9e-34 147.9 120 58.3
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 4.9e-34 147.9 120 58.3
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 4.9e-34 147.9 120 58.3
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 4.9e-34 147.9 120 60.0
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 4.9e-34 147.9 125 54.4
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 6.3e-34 147.5 120 58.3
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.4e-33 146.4 121 57.0
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.4e-33 146.4 120 58.3
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 3.1e-33 145.2 120 56.7
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 5.4e-33 144.4 120 57.5
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 5.4e-33 144.4 120 57.5
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 2.7e-32 142.1 120 56.7
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 3.5e-32 141.7 120 56.7
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 3.5e-32 141.7 124 51.6
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 3.5e-32 141.7 124 51.6
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 3.5e-32 141.7 124 51.6
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.5e-32 141.4 117 54.7
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 4.5e-32 141.4 124 51.6
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 7.8e-32 140.6 118 54.2
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 2.3e-31 139.0 118 55.9
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.9e-31 138.7 123 51.2
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 2.9e-31 138.7 125 52.8
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 3.8e-31 138.3 120 55.0
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.0e-31 137.9 117 53.0
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 8.6e-31 137.1 120 55.0
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 1.1e-30 136.7 120 54.2
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 3.3e-30 135.2 120 54.2
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 3.3e-30 135.2 120 54.2
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 4.3e-30 134.8 120 55.0
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 4.3e-30 134.8 120 55.0
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 5.6e-30 134.4 118 54.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 1.6e-29 132.9 120 54.2
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 1.6e-29 132.9 120 54.2
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 1.6e-29 132.9 118 52.5
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.1e-29 132.5 121 52.9
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 2.8e-29 132.1 120 56.7
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 4.7e-29 131.3 121 52.9
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 4.7e-29 131.3 125 50.4
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 6.1e-29 131.0 125 50.4
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 6.1e-29 131.0 122 52.5
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.0e-28 130.2 115 53.9
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.4e-28 129.8 117 53.8
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.3e-28 129.0 120 50.8
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.3e-28 129.0 120 50.8
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 2.3e-28 129.0 120 50.8
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 2.3e-28 129.0 125 49.6
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 4.0e-28 128.3 120 50.8
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 4.4e-27 124.8 118 49.2
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.7e-26 122.9 117 52.1
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 8.3e-26 120.6 116 49.1
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 8.3e-26 120.6 111 50.5
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 1.1e-25 120.2 118 46.6
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 7.0e-25 117.5 111 48.6
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 2.0e-24 115.9 107 53.3
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 2.0e-24 115.9 118 47.5
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 4.6e-24 114.8 116 47.4
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 3.0e-23 112.1 96 52.1
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 3.9e-23 111.7 119 46.2
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 3.9e-23 111.7 77 66.2
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 6.6e-23 110.9 119 46.2
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 1.5e-22 109.8 94 52.1
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.9e-22 109.4 111 45.9
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 2.5e-22 109.0 124 43.5
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.1e-21 105.9 53 90.6
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 4.7e-21 104.8 103 51.5
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 2.0e-19 99.4 65 73.8
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 2.0e-19 99.4 69 69.6
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 3.4e-19 98.6 65 73.8
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 1.3e-18 96.7 69 68.1
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 4.9e-18 94.7 122 39.3
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 6.4e-18 94.4 58 75.9
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.4e-17 93.2 69 60.9
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 1.9e-17 92.8 62 66.1
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 2.4e-17 92.4 154 33.1
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 9.2e-17 90.5 77 53.2
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.2e-16 90.1 67 62.7
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 3.5e-16 88.6 84 48.8
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.6e-16 88.2 74 52.7
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 2.3e-15 85.9 106 38.7
arahy.Tifrunner.gnm1.ann1.BQ9Q0E Arachis hypogaea HOM05D005168 ORTHO05D006358 3.0e-15 85.5 55 70.9
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 5.1e-15 84.7 61 62.3
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 2.5e-14 82.4 93 44.1
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 5.6e-14 81.3 122 31.1
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 2.8e-13 79.0 54 59.3
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 2.3e-12 75.9 87 47.1
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.1e-12 75.5 76 47.4
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 7.5e-11 70.9 55 58.2
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.7e-10 69.7 45 66.7
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 2.9e-10 68.9 109 36.7
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 6.4e-10 67.8 128 30.5
arahy.Tifrunner.gnm1.ann1.46RTPJ Arachis hypogaea HOM05D005168 ORTHO05D006358 8.3e-10 67.4 42 71.4
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 1.9e-09 66.2 110 37.3
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 1.9e-09 66.2 39 66.7
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.4e-09 65.9 108 33.3
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 4.1e-09 65.1 92 35.9
Glyma.20G021400 Glycine max HOM05D001329 ORTHO05D006358 1.2e-08 63.5 43 67.4
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 3.5e-08 62.0 55 52.7
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 7.8e-08 60.8 50 54.0
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.0e-07 60.5 123 35.0
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.0e-07 60.5 121 33.9
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.3e-07 60.1 121 33.9
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.3e-07 60.1 113 36.3
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.3e-07 60.1 123 33.3
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 1.7e-07 59.7 111 33.3
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 1.7e-07 59.7 110 31.8
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.7e-07 59.7 121 33.9
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.7e-07 59.7 121 33.9
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.7e-07 59.7 121 33.9
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.7e-07 59.7 123 32.5
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 3.0e-07 58.9 121 33.9
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 3.0e-07 58.9 114 32.5
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 3.9e-07 58.5 72 43.1
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 3.9e-07 58.5 111 34.2
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 5.1e-07 58.2 121 32.2
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 5.1e-07 58.2 111 32.4
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 5.1e-07 58.2 49 44.9
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 6.6e-07 57.8 121 33.1
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 8.6e-07 57.4 125 33.6
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 1.1e-06 57.0 117 33.3
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 1.5e-06 56.6 110 30.9
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 1.9e-06 56.2 111 29.7
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.9e-06 56.2 69 40.6
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 2.5e-06 55.8 77 36.4
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.5e-06 55.8 122 30.3
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.3e-06 55.5 123 34.1
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.3e-06 55.5 123 34.1
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.3e-06 55.5 123 34.1
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.3e-06 55.5 123 34.1
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 3.3e-06 55.5 114 32.5
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 4.3e-06 55.1 112 33.9
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 5.6e-06 54.7 109 29.4
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 5.6e-06 54.7 109 29.4
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 5.6e-06 54.7 109 29.4
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 5.6e-06 54.7 109 29.4
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 5.6e-06 54.7 109 29.4
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 5.6e-06 54.7 109 29.4
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 5.6e-06 54.7 109 29.4
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 5.6e-06 54.7 109 29.4
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 5.6e-06 54.7 112 33.0
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 5.6e-06 54.7 115 33.0
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 7.3e-06 54.3 109 29.4
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 7.3e-06 54.3 109 29.4
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 7.3e-06 54.3 123 32.5


User provided reference genes

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