Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050353 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 1.5e-52 209.1 100 100.0
CSS0031150 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 5.6e-39 164.1 85 89.4
CSS0037344 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 5.6e-39 164.1 85 89.4
CSS0021077 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 1.1e-37 159.8 85 87.1
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 1.2e-36 156.4 85 84.7
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 1.2e-36 156.4 85 87.1
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 5.8e-36 154.1 85 84.7
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 2.4e-34 148.7 85 78.8
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 2.4e-34 148.7 85 81.2
Atru.chr4.3165 Acer truncatum HOM05D006708 ORTHO05D008321 3.2e-34 148.3 85 82.4
Cpa.g.sc146.18 Carica papaya HOM05D006708 ORTHO05D008321 3.2e-34 148.3 85 77.6
CiPaw.01G128700 Carya illinoinensis HOM05D006708 ORTHO05D008321 9.2e-34 146.7 85 80.0
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 1.2e-33 146.4 85 77.6
Eucgr.B03960 Eucalyptus grandis HOM05D006708 ORTHO05D008321 1.2e-33 146.4 85 78.8
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 1.2e-33 146.4 85 76.5
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 1.6e-33 146.0 85 76.5
Sabra08G0153200 Salix brachista HOM05D006708 ORTHO05D008321 1.6e-33 146.0 85 76.5
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 2.7e-33 145.2 85 80.0
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 4.6e-33 144.4 85 78.8
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 4.6e-33 144.4 85 78.8
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 7.8e-33 143.7 85 76.5
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 1.0e-32 143.3 85 75.3
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 1.0e-32 143.3 85 81.2
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 1.3e-32 142.9 85 77.6
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 1.7e-32 142.5 85 77.6
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 1.7e-32 142.5 85 77.6
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 1.7e-32 142.5 85 78.8
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 2.3e-32 142.1 85 75.3
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 3.0e-32 141.7 85 75.3
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 3.0e-32 141.7 85 75.3
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 3.0e-32 141.7 85 76.5
Gohir.D02G064500 Gossypium hirsutum HOM05D006708 ORTHO05D008321 3.0e-32 141.7 85 77.6
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 3.0e-32 141.7 85 76.5
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 3.0e-32 141.7 85 75.3
Glyma.13G119200 Glycine max HOM05D006708 ORTHO05D008321 3.9e-32 141.4 85 75.3
MD16G1135500 Malus domestica HOM05D006708 ORTHO05D008321 3.9e-32 141.4 85 75.3
Prupe.1G104700 Prunus persica HOM05D006708 ORTHO05D008321 3.9e-32 141.4 85 76.5
Aqoxy2G02504 Aquilegia oxysepala HOM05D006708 ORTHO05D008321 5.1e-32 141.0 97 69.1
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 5.1e-32 141.0 85 69.4
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 1.1e-31 139.8 85 75.3
C03p42560 Brassica napus HOM05D006708 ORTHO05D008321 1.5e-31 139.4 85 72.9
BolC3t16526H Brassica oleracea HOM05D006708 ORTHO05D008321 1.5e-31 139.4 85 72.9
BraA03t12678Z Brassica rapa HOM05D006708 ORTHO05D008321 1.5e-31 139.4 85 72.9
DCAR_023411 Daucus carota HOM05D006708 ORTHO05D008321 1.5e-31 139.4 83 74.7
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 1.5e-31 139.4 85 75.3
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 1.5e-31 139.4 85 71.8
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 1.5e-31 139.4 85 72.9
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 2.5e-31 138.7 85 76.5
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 4.3e-31 137.9 85 70.6
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 4.3e-31 137.9 85 72.9
Psat4g021160 Pisum sativum HOM05D006708 ORTHO05D008321 4.3e-31 137.9 85 72.9
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 5.6e-31 137.5 85 71.8
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 5.6e-31 137.5 89 73.0
A03p34980 Brassica napus HOM05D006708 ORTHO05D008321 9.6e-31 136.7 85 70.6
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 9.6e-31 136.7 85 69.4
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 9.6e-31 136.7 85 71.8
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 1.3e-30 136.3 85 70.6
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 1.6e-30 136.0 85 74.1
Carub.0003s0647 Capsella rubella HOM05D006708 ORTHO05D008321 2.8e-30 135.2 85 71.8
SGA_v2.0_scaffold109G31012 Striga asiatica HOM05D006708 ORTHO05D008321 2.8e-30 135.2 85 71.8
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 3.6e-30 134.8 85 71.8
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 3.6e-30 134.8 85 72.9
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 4.8e-30 134.4 85 72.9
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 6.2e-30 134.0 85 72.9
Sp3g05900 Schrenkiella parvula HOM05D006708 ORTHO05D008321 8.1e-30 133.7 85 72.9
Sed0006346 Sechium edule HOM05D006708 ORTHO05D008321 8.1e-30 133.7 74 79.7
Sc19g0002530 Simmondsia chinensis HOM05D006708 ORTHO05D008321 8.1e-30 133.7 85 72.9
PGR031G3511 Punica granatum HOM05D006708 ORTHO05D008321 1.1e-29 133.3 85 67.1
AL3G18120 Arabidopsis lyrata HOM05D006708 ORTHO05D008321 1.8e-29 132.5 85 69.4
CARHR081550 Cardamine hirsuta HOM05D006708 ORTHO05D008321 1.8e-29 132.5 85 70.6
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 2.4e-29 132.1 85 71.8
THA.LOC104802685 Tarenaya hassleriana HOM05D006708 ORTHO05D008321 2.4e-29 132.1 85 72.9
EL10Ac3g06239 Beta vulgaris HOM05D006708 ORTHO05D008321 3.1e-29 131.7 85 67.1
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 3.1e-29 131.7 85 71.8
Cc03_g00080 Coffea canephora HOM05D006708 ORTHO05D008321 4.0e-29 131.3 85 69.4
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 5.3e-29 131.0 85 68.2
Thhalv10022298m.g Eutrema salsugineum HOM05D006708 ORTHO05D008321 5.3e-29 131.0 85 72.9
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 5.3e-29 131.0 85 68.2
ClCG06G004170 Citrullus lanatus HOM05D006708 ORTHO05D008321 6.9e-29 130.6 74 77.0
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 1.2e-28 129.8 85 65.9
AT3G06950 Arabidopsis thaliana HOM05D006708 ORTHO05D008321 1.5e-28 129.4 85 68.2
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 2.0e-28 129.0 85 70.6
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 2.6e-28 128.6 85 68.2
PSO210G5816 Papaver somniferum HOM05D006708 ORTHO05D008321 2.6e-28 128.6 85 67.1
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 2.6e-28 128.6 85 65.9
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 3.4e-28 128.3 85 69.4
PSO761G0290 Papaver somniferum HOM05D006708 ORTHO05D008321 3.4e-28 128.3 85 67.1
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 6.4e-27 124.0 85 67.1
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 1.1e-26 123.2 76 71.1
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 1.9e-26 122.5 85 67.1
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 1.9e-26 122.5 89 65.2
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 2.4e-26 122.1 85 64.7
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 2.4e-26 122.1 78 70.5
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 9.3e-26 120.2 85 63.5
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 3.0e-24 115.2 85 63.5
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 7.1e-18 94.0 85 49.4
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 7.1e-18 94.0 85 52.9
CSS0015576 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 1.6e-17 92.8 66 72.7
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 2.7e-17 92.0 89 48.3
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 3.9e-16 88.2 85 48.2
Os05g0279300 Oryza sativa ssp. japonica HOM05D006708 ORTHO05D008321 1.6e-14 82.8 58 63.8
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 3.4e-12 75.1 75 46.7
Lsat_1_v5_gn_4_14320 Lactuca sativa HOM05D006708 ORTHO05D008321 2.2e-11 72.4 71 49.3
Cfa014219 Carpinus fangiana HOM05D006708 ORTHO05D008321 7.9e-09 63.9 31 90.3
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 1.3e-08 63.2 31 87.1
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 3.9e-08 61.6 88 39.8
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 2.5e-07 58.9 87 36.8
unitig_1.g29359 Utricularia gibba HOM05D006708 ORTHO05D008321 2.1e-06 55.8 31 74.2
unitig_747.g22054 Utricularia gibba HOM05D006708 ORTHO05D008321 2.1e-06 55.8 31 74.2


User provided reference genes

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