Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 8.5e-31 136.3 68 100.0
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 8.5e-31 136.3 68 100.0
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 1.9e-30 135.2 67 97.0
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 5.5e-30 133.7 67 95.5
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 1.6e-29 132.1 67 91.0
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 3.6e-29 131.0 67 94.0
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 4.7e-29 130.6 67 95.5
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 6.1e-29 130.2 67 92.5
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 8.0e-29 129.8 67 89.6
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 8.0e-29 129.8 67 94.0
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 8.0e-29 129.8 67 95.5
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 1.0e-28 129.4 67 91.0
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 1.8e-28 128.6 67 92.5
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 2.3e-28 128.3 67 94.0
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 2.3e-28 128.3 67 94.0
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 3.0e-28 127.9 67 94.0
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 3.0e-28 127.9 67 92.5
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 5.2e-28 127.1 68 95.6
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 5.2e-28 127.1 67 92.5
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 5.2e-28 127.1 67 94.0
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 6.7e-28 126.7 67 91.0
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 6.7e-28 126.7 67 92.5
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 8.8e-28 126.3 67 89.6
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 1.1e-27 125.9 67 91.0
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 1.1e-27 125.9 67 91.0
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.1e-27 125.9 67 92.5
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.1e-27 125.9 67 92.5
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.1e-27 125.9 67 92.5
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.1e-27 125.9 67 92.5
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 1.1e-27 125.9 67 92.5
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 1.1e-27 125.9 67 92.5
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.5e-27 125.6 67 94.0
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.5e-27 125.6 67 89.6
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 2.6e-27 124.8 67 89.6
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 3.3e-27 124.4 67 83.6
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 3.3e-27 124.4 67 91.0
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 3.3e-27 124.4 67 89.6
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 4.4e-27 124.0 67 89.6
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 4.4e-27 124.0 67 89.6
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 4.4e-27 124.0 67 85.1
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 4.4e-27 124.0 67 88.1
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 4.4e-27 124.0 67 88.1
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 4.4e-27 124.0 67 88.1
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 4.4e-27 124.0 67 88.1
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 4.4e-27 124.0 67 88.1
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 4.4e-27 124.0 67 91.0
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 5.7e-27 123.6 67 92.5
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 7.4e-27 123.2 67 88.1
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 7.4e-27 123.2 67 88.1
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 7.4e-27 123.2 67 92.5
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 7.4e-27 123.2 67 92.5
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 7.4e-27 123.2 67 88.1
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 9.7e-27 122.9 67 88.1
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 9.7e-27 122.9 67 86.6
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 9.7e-27 122.9 67 88.1
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 1.3e-26 122.5 67 86.6
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 1.3e-26 122.5 67 88.1
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.7e-26 122.1 67 86.6
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 1.7e-26 122.1 67 86.6
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 1.7e-26 122.1 67 88.1
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 1.7e-26 122.1 67 86.6
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 1.7e-26 122.1 67 86.6
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 1.7e-26 122.1 67 88.1
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 2.2e-26 121.7 69 88.4
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 2.2e-26 121.7 67 85.1
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 2.8e-26 121.3 67 86.6
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 3.7e-26 120.9 67 85.1
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 3.7e-26 120.9 67 86.6
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 3.7e-26 120.9 67 86.6
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 3.7e-26 120.9 67 86.6
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 3.7e-26 120.9 67 86.6
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 3.7e-26 120.9 67 86.6
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 4.8e-26 120.6 67 85.1
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 4.8e-26 120.6 67 91.0
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 4.8e-26 120.6 67 85.1
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 4.8e-26 120.6 67 88.1
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 4.8e-26 120.6 67 86.6
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 4.8e-26 120.6 67 85.1
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 4.8e-26 120.6 67 85.1
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 6.3e-26 120.2 67 86.6
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 6.3e-26 120.2 67 85.1
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 8.2e-26 119.8 67 86.6
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 1.1e-25 119.4 67 85.1
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 1.4e-25 119.0 67 83.6
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 1.4e-25 119.0 67 86.6
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 2.4e-25 118.2 67 86.6
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 3.1e-25 117.9 67 82.1
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 4.1e-25 117.5 67 86.6
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 4.1e-25 117.5 67 86.6
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 4.1e-25 117.5 67 86.6
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 5.3e-25 117.1 67 83.6
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 7.0e-25 116.7 67 83.6
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 9.1e-25 116.3 67 82.1
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.2e-24 115.9 67 86.6
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 2.0e-24 115.2 67 80.6
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 2.0e-24 115.2 67 82.1
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 2.6e-24 114.8 67 83.6
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 5.9e-24 113.6 67 79.1
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 7.7e-24 113.2 67 80.6
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 7.7e-24 113.2 67 80.6
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 1.0e-23 112.8 67 82.1
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.0e-23 112.8 67 80.6
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 1.3e-23 112.5 67 80.6
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 1.3e-23 112.5 67 79.1
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 1.7e-23 112.1 67 79.1
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 2.2e-23 111.7 67 80.6
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 2.2e-23 111.7 67 80.6
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 2.2e-23 111.7 67 80.6
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 2.2e-23 111.7 67 80.6
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 2.2e-23 111.7 67 79.1
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 2.9e-23 111.3 67 79.1
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 5.0e-23 110.5 67 79.1
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 77.6
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 79.1
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 79.1
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 77.6
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 79.1
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 80.6
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 80.6
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 80.6
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 8.5e-23 109.8 67 80.6
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 8.5e-23 109.8 67 80.6
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 1.1e-22 109.4 94 58.5
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 1.1e-22 109.4 67 79.1
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 1.1e-22 109.4 66 83.3
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 1.1e-22 109.4 67 80.6
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 1.5e-22 109.0 67 80.6
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 1.5e-22 109.0 67 80.6
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 1.9e-22 108.6 67 79.1
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 2.5e-22 108.2 67 77.6
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 4.2e-22 107.5 67 79.1
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 4.2e-22 107.5 66 81.8
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 5.5e-22 107.1 67 77.6
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 5.5e-22 107.1 67 77.6
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 5.5e-22 107.1 67 77.6
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 7.2e-22 106.7 67 77.6
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 1.2e-21 105.9 67 76.1
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 1.2e-21 105.9 67 76.1
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 1.2e-21 105.9 67 76.1
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 1.2e-21 105.9 67 76.1
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 1.2e-21 105.9 67 76.1
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 1.2e-21 105.9 67 77.6
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 1.6e-21 105.5 67 74.6
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 1.6e-21 105.5 67 74.6
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 2.7e-21 104.8 67 74.6
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 8.0e-21 103.2 67 73.1
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 2.3e-20 101.7 67 76.1
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 4.0e-20 100.9 67 71.6
Lsat_1_v5_gn_9_36141 Lactuca sativa HOM05D001534 ORTHO05D004495 5.2e-20 100.5 53 88.7
Psat5g174000 Pisum sativum HOM05D001534 ORTHO05D004495 2.6e-19 98.2 49 91.8
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 4.8e-18 94.0 69 68.1
Oeu007990.1 Olea europaea HOM05D001534 ORTHO05D004495 1.8e-17 92.0 49 87.8
Oeu019637.1 Olea europaea HOM05D001534 ORTHO05D004495 1.8e-17 92.0 49 89.8
arahy.Tifrunner.gnm1.ann1.UV2YJP Arachis hypogaea HOM05D001534 ORTHO05D004495 1.0e-15 86.3 67 67.2
Actinidia35374 Actinidia chinensis HOM05D001534 ORTHO05D004495 8.5e-15 83.2 49 83.7
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 1.5e-14 82.4 67 55.2
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 7.2e-14 80.1 66 53.0
Hma1.2p1_3177F.1_g333625 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 9.4e-14 79.7 49 79.6
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 9.4e-14 79.7 66 60.6
FAN25G3175 Fragaria x ananassa HOM05D001534 ORTHO05D004495 8.0e-13 76.6 58 67.2
Nn5g26968 Nelumbo nucifera HOM05D001534 ORTHO05D004495 8.0e-13 76.6 67 64.2
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 1.4e-12 75.9 66 51.5
A03p56890 Brassica napus HOM05D001534 ORTHO05D004495 2.3e-12 75.1 49 73.5
CsaV3_1G040420 Cucumis sativus L. HOM05D001534 ORTHO05D004495 8.8e-12 73.2 35 94.3
CBR_g41757 Chara braunii HOM05D001534 ORTHO05D004495 9.8e-11 69.7 65 49.2
Rhsim06G0224400 Rhododendron simsii HOM05D002795 ORTHO05D003219 2.8e-10 68.2 35 88.6
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 4.8e-10 67.4 34 94.1
AagrBONN_evm.TU.Sc2ySwM_368.1120 Anthoceros agrestis HOM05D001534 ORTHO05D004495 8.3e-10 66.6 65 50.8
A01p17980 Brassica napus HOM05D001534 ORTHO05D004495 8.3e-10 66.6 36 83.3
BraA01t01753Z Brassica rapa HOM05D001534 ORTHO05D004495 8.3e-10 66.6 36 83.3
Lalb_Chr20g0115821 Lupinus albus HOM05D001534 ORTHO05D004495 8.3e-10 66.6 34 88.2
SGA_v2.0_scaffold478G52224 Striga asiatica HOM05D001534 ORTHO05D004495 1.4e-09 65.9 34 94.1
Mapoly0058s0087 Marchantia polymorpha HOM05D001534 ORTHO05D004495 3.5e-08 61.2 65 43.1
Sabra16G0237300 Salix brachista HOM05D001534 ORTHO05D004495 5.9e-08 60.5 34 79.4
Nitab4.5_0001049g0020 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.0e-07 59.7 33 81.8
Aa31LG3G11260 Aethionema arabicum HOM05D001534 ORTHO05D004495 2.9e-07 58.2 34 73.5
vmacro09683 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 8.6e-07 56.6 37 78.4


User provided reference genes

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