Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 2549.2 1346 100.0
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 2077.0 1354 81.5
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 2035.0 1350 80.1
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 2025.8 1351 81.0
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1947.2 1357 76.9
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1909.0 1388 74.8
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1892.9 1380 75.6
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1850.1 1361 73.0
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1834.3 1358 72.8
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1830.8 1359 73.1
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1827.4 1364 72.7
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1783.8 1366 72.2
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1763.0 1365 69.7
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1755.7 1361 69.6
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1731.1 1361 69.7
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1728.4 1298 73.9
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1726.8 1358 68.0
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1726.1 1357 68.8
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1724.1 1351 68.0
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1724.1 1358 67.8
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1720.7 1354 68.8
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1716.4 1355 68.2
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1714.5 1358 68.2
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1711.8 1373 68.2
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1703.7 1354 67.7
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1687.5 1358 67.4
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1684.8 1350 67.9
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1676.4 1344 67.3
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1675.2 1370 67.4
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1667.5 1358 66.7
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1661.0 1352 66.6
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1656.7 1354 67.1
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1651.7 1348 66.6
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1645.9 1356 67.0
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1637.9 1373 66.5
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1635.5 1354 66.1
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1634.4 1356 66.7
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1630.5 1354 66.0
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1625.5 1335 65.8
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1622.1 1386 66.2
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1614.0 1365 64.7
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1607.8 1355 64.1
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1605.1 1355 64.1
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1604.0 1361 66.0
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1604.0 1359 63.7
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1596.6 1369 64.1
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1594.7 1361 63.0
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1593.9 1348 65.9
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1589.7 1364 64.7
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1589.3 1362 64.6
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1588.9 1370 63.9
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1585.5 1355 63.5
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1579.3 1364 64.2
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1572.8 1365 63.9
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1572.8 1356 63.9
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1560.8 1354 63.7
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1548.5 1409 61.5
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1533.9 1364 62.0
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1528.5 1199 68.0
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1523.1 1360 61.5
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1515.7 1350 62.7
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1506.1 1355 61.8
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1500.7 1363 61.2
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1497.3 1335 62.2
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1496.5 1226 66.1
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1496.1 1326 62.6
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1493.4 1356 61.7
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1493.0 1276 63.0
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1491.1 1329 62.3
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1488.0 1337 61.5
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1487.6 1411 61.2
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1486.5 1334 62.2
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1484.9 1330 61.3
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1479.5 1326 61.7
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1477.2 1326 61.8
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1472.2 1360 59.9
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1470.3 1329 61.6
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1464.9 1356 59.8
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1464.1 1340 61.3
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1461.8 1329 61.6
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1459.9 1240 65.0
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1459.5 1364 59.4
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1449.5 1398 58.4
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1447.2 1336 61.1
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1446.4 1067 72.0
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1436.0 1366 59.5
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1431.8 1357 58.5
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1392.9 1288 60.3
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1379.0 1368 56.1
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1372.1 1285 60.2
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1359.0 1066 67.6
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1318.1 1376 56.0
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1303.5 1171 61.1
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1295.0 1182 60.5
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1292.3 1360 56.2
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1263.1 1062 64.3
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 0.0e+00 1260.7 978 69.5
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 0.0e+00 1187.9 1348 52.2
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1184.9 1364 51.5
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 0.0e+00 1134.4 1194 53.9
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 0.0e+00 1107.0 952 62.6
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1103.2 753 76.2
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 0.0e+00 1087.4 1355 49.2
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 0.0e+00 1086.6 1361 49.3
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.7e-295 1020.0 953 59.2
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 3.7e-295 1018.8 1017 54.9
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.6e-274 949.1 774 65.8
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 6.8e-273 944.9 830 63.6
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.9e-268 929.1 1174 49.1
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.8e-257 893.6 721 64.5
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 9.0e-249 864.8 1428 40.5
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.8e-241 840.5 1073 48.9
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 2.0e-240 837.0 1133 46.0
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.9e-239 832.4 838 56.2
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.7e-223 780.8 1510 37.1
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 6.7e-188 662.5 1117 39.0
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.5e-182 644.8 506 68.6
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 1.9e-182 644.4 613 57.9
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.7e-165 586.6 460 68.9
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 2.4e-161 574.3 1508 30.8
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 4.9e-146 523.5 407 70.3
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 3.2e-137 494.2 412 66.5
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 3.8e-114 417.5 343 71.1
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.9e-105 388.7 343 63.0
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.7e-104 384.8 333 63.4
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 3.3e-94 351.3 435 49.4
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.0e-90 339.7 372 54.6
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 3.1e-84 318.2 1414 25.5
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 3.1e-84 318.2 276 70.3
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 2.9e-66 258.5 1286 24.9
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 8.8e-63 246.9 606 36.8
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 1.2e-51 209.9 156 67.3
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 1.2e-51 209.9 246 49.6
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 4.7e-40 171.4 114 75.4
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 2.3e-39 169.1 106 82.1
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 7.5e-38 164.1 235 43.4
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 1.2e-30 140.2 82 84.1
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.6e-27 128.3 191 46.1
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 3.0e-26 125.6 87 69.0
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 1.9e-25 122.9 167 46.1
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 5.6e-25 121.3 114 56.1
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.6e-16 93.2 84 59.5
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.6e-16 93.2 84 59.5
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.3e-15 88.2 71 64.8
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 1.2e-11 77.0 50 78.0
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 3.5e-11 75.5 58 70.7
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 6.0e-11 74.7 78 53.8
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 1.6e-08 66.6 89 43.8
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 1.4e-07 63.5 161 27.3
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 3.1e-07 62.4 157 27.4
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 5.3e-07 61.6 161 26.7
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 9.0e-07 60.8 161 25.5
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 9.0e-07 60.8 183 26.2
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 1.5e-06 60.1 136 25.7
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 1.5e-06 60.1 161 25.5
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 2.0e-06 59.7 198 27.3
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 2.0e-06 59.7 138 28.3
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 2.6e-06 59.3 157 26.8
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 2.6e-06 59.3 157 26.8
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 2.6e-06 59.3 161 25.5
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 2.6e-06 59.3 51 56.9
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 3.4e-06 58.9 172 28.5
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 3.4e-06 58.9 150 26.7
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 3.4e-06 58.9 183 25.1
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 3.4e-06 58.9 144 28.5
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 4.5e-06 58.5 135 25.9
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 7.6e-06 57.8 138 26.8
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 7.6e-06 57.8 150 26.7
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 7.6e-06 57.8 135 26.7
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 7.6e-06 57.8 136 25.0
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 7.6e-06 57.8 161 25.5
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 7.6e-06 57.8 161 25.5
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 9.9e-06 57.4 161 24.8
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 9.9e-06 57.4 161 25.5


User provided reference genes

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