Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1451.8 707 100.0
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1410.2 707 97.7
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1270.4 712 86.2
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1221.5 712 83.3
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1196.0 711 82.1
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1178.3 713 79.9
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1169.1 712 80.1
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1168.3 712 78.1
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 0.0e+00 1166.4 728 80.8
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1165.2 711 78.8
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1163.7 711 78.9
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1161.4 707 79.6
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1159.1 712 77.7
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 0.0e+00 1159.1 708 79.7
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1154.8 710 79.0
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1153.7 712 77.7
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1148.3 712 77.5
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1148.3 714 78.4
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1146.0 714 78.0
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1145.2 712 77.0
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1143.6 711 77.8
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1142.9 710 77.9
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1140.2 714 77.5
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1139.4 697 78.8
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 0.0e+00 1137.1 709 78.7
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 0.0e+00 1132.9 711 77.8
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1132.9 711 77.4
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1131.7 707 76.9
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 0.0e+00 1130.9 715 76.4
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 0.0e+00 1127.5 716 76.0
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 0.0e+00 1124.4 709 77.6
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 0.0e+00 1122.8 714 76.1
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 0.0e+00 1122.5 698 79.1
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 0.0e+00 1120.1 716 75.7
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 0.0e+00 1119.8 709 76.2
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1117.4 708 76.6
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 0.0e+00 1115.1 718 76.5
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1112.1 713 76.2
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 0.0e+00 1112.1 711 76.1
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 0.0e+00 1110.1 712 74.9
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 0.0e+00 1107.8 705 75.6
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1105.9 713 76.3
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1104.0 713 76.0
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 0.0e+00 1103.6 706 76.5
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 0.0e+00 1100.5 710 74.9
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 0.0e+00 1099.3 704 76.1
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 0.0e+00 1099.3 699 76.3
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 0.0e+00 1098.6 705 76.2
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 0.0e+00 1096.6 709 74.6
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1093.6 715 75.2
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 0.0e+00 1092.4 792 69.6
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 0.0e+00 1092.4 709 75.9
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 0.0e+00 1091.6 703 75.2
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 0.0e+00 1090.1 709 75.2
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 0.0e+00 1088.2 744 72.4
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 0.0e+00 1087.4 701 75.7
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 0.0e+00 1086.2 701 75.0
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 0.0e+00 1085.9 705 75.3
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 0.0e+00 1085.1 707 74.8
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1083.6 706 75.1
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 0.0e+00 1077.0 736 72.6
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 0.0e+00 1075.1 706 76.3
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 4.8e-312 1074.3 706 73.9
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 3.7e-310 1067.8 706 75.6
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 5.8e-308 1060.4 669 77.0
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 7.4e-303 1043.5 711 71.9
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 3.7e-302 1041.2 732 71.0
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 7.6e-300 1033.5 712 71.9
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 5.0e-299 1030.8 701 72.2
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 8.5e-299 1030.0 701 72.0
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 8.5e-299 1030.0 691 72.2
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 5.5e-298 1027.3 705 69.9
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 3.6e-297 1024.6 685 72.1
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 4.6e-297 1024.2 701 71.9
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 4.6e-297 1024.2 694 71.9
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 1.8e-296 1022.3 696 71.4
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 9.7e-295 1016.5 695 71.1
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 9.7e-295 1016.5 702 71.7
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 2.2e-294 1015.4 697 70.9
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 2.4e-293 1011.9 695 70.9
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 2.4e-293 1011.9 704 70.9
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 1.2e-292 1009.6 776 64.8
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 2.9e-291 1005.0 702 71.4
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 1.1e-290 1003.0 560 86.1
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 1.0e-288 996.5 712 71.9
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 5.7e-287 990.7 757 66.1
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 1.3e-286 989.6 699 69.2
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 1.4e-285 986.1 707 68.3
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.7e-283 979.2 710 69.0
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 6.7e-280 967.2 596 77.9
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 1.4e-277 959.5 705 69.2
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 1.0e-275 953.4 585 79.0
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 6.5e-275 950.7 709 66.7
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 1.7e-262 909.4 704 66.9
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 4.8e-262 907.9 671 66.3
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 9.1e-261 903.7 715 62.9
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 1.2e-247 860.1 549 76.7
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 9.2e-237 823.9 745 61.3
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 3.5e-228 795.4 523 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 7.6e-215 751.1 690 54.6
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 2.4e-208 729.6 690 53.0
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 2.5e-186 656.4 694 48.8
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.3e-185 654.1 444 72.1
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 3.1e-184 649.4 880 43.0
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 2.9e-174 616.3 386 75.6
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 4.7e-172 609.0 681 48.6
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 3.0e-171 606.3 847 42.4
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 1.9e-165 587.0 490 59.8
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 3.5e-151 539.7 749 42.2
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 1.0e-142 511.5 738 41.3
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 1.4e-136 491.1 333 77.2
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 1.7e-129 467.6 811 37.5
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 3.2e-128 463.4 724 38.7
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 5.6e-125 452.6 752 38.2
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.9e-120 437.6 303 71.9
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 5.6e-109 399.4 351 59.8
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 4.2e-80 303.5 201 73.1
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 2.1e-76 291.2 270 55.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 4.8e-68 263.5 193 69.4
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.8e-62 245.0 164 70.7
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 2.1e-55 221.5 137 77.4
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 1.1e-40 172.6 112 74.1
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 8.0e-39 166.4 102 79.4
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 1.5e-37 162.2 179 53.1
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 1.5e-32 145.6 112 59.8
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 6.1e-31 140.2 100 70.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 8.0e-31 139.8 122 57.4
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 6.1e-23 113.6 61 83.6
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 5.4e-19 100.5 149 43.6
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 2.5e-16 91.7 62 67.7
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 5.6e-16 90.5 59 71.2
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 4.7e-15 87.4 63 65.1
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 2.0e-13 82.0 45 82.2
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 2.3e-09 68.6 46 63.0
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 8.6e-09 66.6 40 75.0
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 1.5e-08 65.9 51 49.0


User provided reference genes

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