Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.6e-159 564.7 391 100.0
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 7.0e-77 292.0 332 58.1
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 7.0e-77 292.0 341 56.6
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.2e-75 287.0 341 55.4
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 5.0e-75 285.8 329 55.9
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 9.4e-74 281.6 361 49.9
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.2e-73 281.2 339 54.9
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.2e-72 275.8 400 57.8
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 6.7e-72 275.4 340 50.6
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 1.3e-70 271.2 361 52.9
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 4.1e-69 266.2 355 49.9
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 5.3e-69 265.8 343 60.9
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 1.2e-68 264.6 332 57.8
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.6e-68 264.2 400 58.5
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 2.7e-68 263.5 338 54.1
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 3.5e-68 263.1 339 54.3
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.7e-67 260.8 341 55.7
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 2.9e-67 260.0 338 60.4
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 6.5e-67 258.8 339 52.5
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 5.5e-66 255.8 375 49.6
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.7e-65 253.4 352 52.3
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 6.1e-65 252.3 363 47.4
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 8.8e-64 248.4 337 55.8
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 1.2e-63 248.1 347 53.6
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.5e-63 247.7 389 44.5
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 7.5e-63 245.4 352 54.0
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 2.8e-62 243.4 362 51.9
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 3.7e-62 243.0 341 54.3
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 6.3e-62 242.3 353 49.9
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 6.3e-62 242.3 352 51.1
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 1.1e-61 241.5 343 51.6
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.4e-61 241.1 337 51.3
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 4.1e-61 239.6 339 54.6
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 5.4e-61 239.2 338 54.4
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 1.2e-60 238.0 343 51.9
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.6e-60 237.7 340 52.4
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 3.5e-60 236.5 354 47.5
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 1.0e-59 235.0 383 51.7
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.3e-59 234.6 351 47.3
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 5.0e-59 232.6 356 50.6
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.5e-58 231.1 334 46.4
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 7.2e-58 228.8 290 50.7
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 1.6e-57 227.6 349 45.0
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 2.7e-57 226.9 340 50.9
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 8.0e-57 225.3 374 51.1
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 1.0e-56 224.9 356 45.8
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 1.4e-56 224.6 376 44.9
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 1.8e-56 224.2 369 44.4
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 3.0e-56 223.4 355 49.6
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 5.2e-56 222.6 337 49.3
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 8.8e-56 221.9 365 46.0
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 8.8e-56 221.9 352 46.3
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 8.8e-56 221.9 252 57.1
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 1.2e-55 221.5 344 44.8
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 2.0e-55 220.7 354 43.8
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 2.0e-55 220.7 335 54.6
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 2.6e-55 220.3 357 51.8
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 2.6e-55 220.3 328 46.3
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 4.9e-54 216.1 332 50.6
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 1.8e-53 214.2 338 43.5
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 3.1e-53 213.4 368 47.3
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 3.1e-53 213.4 345 43.8
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 4.1e-53 213.0 366 46.7
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.1e-53 213.0 347 51.6
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 5.4e-53 212.6 348 50.0
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 9.2e-53 211.8 345 42.9
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 9.2e-53 211.8 348 51.4
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 9.2e-53 211.8 360 47.2
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 3.5e-52 209.9 370 50.0
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 5.9e-52 209.1 360 45.3
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 1.0e-51 208.4 431 40.8
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 1.0e-51 208.4 343 44.6
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.7e-51 207.6 368 50.5
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.7e-51 207.6 282 46.8
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 1.7e-51 207.6 352 43.5
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.7e-51 207.6 345 48.4
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 1.1e-50 204.9 355 47.0
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.5e-50 204.5 337 41.8
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.9e-50 204.1 380 48.2
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 2.5e-50 203.8 369 45.3
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.3e-50 203.4 350 48.0
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 5.6e-50 202.6 350 48.0
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 5.6e-50 202.6 350 48.0
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 9.5e-50 201.8 353 51.3
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 1.6e-49 201.1 340 45.3
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 3.6e-49 199.9 396 39.4
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.0e-48 198.4 336 44.6
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 1.0e-48 198.4 343 44.0
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 1.8e-48 197.6 359 47.6
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 1.8e-48 197.6 343 43.7
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 2.3e-48 197.2 353 48.4
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 4.0e-48 196.4 346 46.8
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 8.9e-48 195.3 368 48.1
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 1.5e-47 194.5 377 50.4
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.0e-47 194.1 256 51.2
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 4.4e-47 193.0 369 46.6
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 9.8e-47 191.8 358 47.2
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.3e-46 191.4 340 43.8
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 1.3e-46 191.4 372 42.7
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.2e-46 190.7 365 42.7
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 3.7e-46 189.9 339 42.8
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 4.9e-46 189.5 353 50.4
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 6.4e-46 189.1 401 46.1
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 6.4e-46 189.1 144 63.9
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 6.4e-46 189.1 356 45.2
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 8.3e-46 188.7 391 49.1
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 2.4e-45 187.2 346 46.0
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.2e-45 186.8 336 45.8
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 3.2e-45 186.8 360 45.8
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 4.1e-45 186.4 339 44.5
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.0e-44 184.1 244 50.8
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 2.7e-44 183.7 389 45.5
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 3.5e-44 183.3 342 42.7
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 3.5e-44 183.3 327 43.4
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.8e-44 182.2 342 46.2
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 7.8e-44 182.2 146 63.7
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 3.0e-43 180.3 369 49.1
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 3.0e-43 180.3 330 54.8
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.9e-43 179.9 340 45.9
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 8.6e-43 178.7 394 44.2
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 1.9e-42 177.6 326 43.6
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 4.3e-42 176.4 367 44.7
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 4.3e-42 176.4 148 60.1
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 7.3e-42 175.6 468 46.6
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 1.4e-40 171.4 314 40.8
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 3.1e-40 170.2 359 47.4
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 3.1e-40 170.2 359 47.4
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 1.2e-39 168.3 150 59.3
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.2e-39 168.3 366 48.1
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 7.5e-39 165.6 355 44.8
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 2.9e-38 163.7 321 47.7
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 4.1e-37 159.8 318 39.6
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 4.1e-37 159.8 264 51.5
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 9.2e-37 158.7 147 55.1
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 1.6e-36 157.9 365 44.1
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 4.6e-36 156.4 363 44.1
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 6.0e-36 156.0 318 38.7
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 7.8e-36 155.6 315 41.0
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 1.1e-34 151.8 277 42.6
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 2.8e-33 147.1 357 44.8
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 3.2e-29 133.7 77 80.5
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 3.5e-28 130.2 340 44.7
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 1.9e-26 124.4 307 39.7
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 3.3e-26 123.6 281 38.4
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 6.2e-25 119.4 275 40.7
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 4.4e-23 113.2 105 60.0
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 8.4e-22 109.0 105 54.3
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 2.6e-15 87.4 232 43.1
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 7.6e-15 85.9 135 46.7
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 1.3e-11 75.1 291 29.9
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 9.6e-10 68.9 124 33.9
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 3.1e-08 63.9 72 50.0
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 9.9e-07 58.9 44 63.6


User provided reference genes

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