Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.6e-171 605.9 294 100.0
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 7.5e-92 341.3 269 66.2
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 8.6e-88 327.8 269 64.3
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.2e-84 317.4 265 63.0
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.6e-84 316.2 268 61.9
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 5.8e-84 315.1 268 62.7
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 5.8e-84 315.1 269 63.6
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.3e-83 313.9 262 64.1
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.9e-83 312.8 268 61.9
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 6.4e-83 311.6 269 61.7
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 8.3e-83 311.2 352 52.8
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.1e-82 310.8 270 61.5
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.9e-82 310.1 273 57.9
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 3.2e-82 309.3 262 63.4
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 4.1e-82 308.9 268 60.4
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 7.1e-82 308.1 268 60.4
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 7.1e-82 308.1 270 60.4
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 9.2e-82 307.8 270 61.5
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.6e-81 307.0 264 61.0
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 2.1e-81 306.6 269 59.5
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 2.7e-81 306.2 268 60.4
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 4.6e-81 305.4 268 59.7
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 1.0e-80 304.3 268 60.1
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.3e-80 303.9 268 60.1
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.3e-80 303.1 264 59.8
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 3.0e-80 302.8 268 59.3
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.0e-80 302.8 269 59.5
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 3.9e-80 302.4 268 59.0
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 3.9e-80 302.4 270 58.9
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 3.9e-80 302.4 261 61.7
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 5.1e-80 302.0 271 57.6
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 5.1e-80 302.0 268 59.3
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 6.6e-80 301.6 268 61.2
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 8.6e-80 301.2 268 59.3
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.1e-79 300.8 268 59.7
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 1.5e-79 300.4 269 59.1
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.3e-79 299.3 268 59.3
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 3.3e-79 299.3 268 58.6
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.3e-79 299.3 269 59.1
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 3.3e-79 299.3 269 59.9
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 3.3e-79 299.3 268 59.3
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 4.3e-79 298.9 269 58.4
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 4.3e-79 298.9 261 61.3
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.3e-79 298.9 270 60.0
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 7.3e-79 298.1 268 59.3
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 7.3e-79 298.1 269 59.9
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.2e-78 297.4 268 58.6
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.2e-78 297.4 269 57.2
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.6e-78 297.0 261 60.9
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 1.6e-78 297.0 268 58.2
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.6e-78 297.0 270 59.6
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 3.6e-78 295.8 261 60.9
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 3.6e-78 295.8 261 60.9
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 4.7e-78 295.4 269 56.5
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 4.7e-78 295.4 268 59.0
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 6.2e-78 295.0 268 59.3
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 6.2e-78 295.0 269 56.9
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 1.1e-77 294.3 268 57.5
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.4e-77 293.9 269 56.1
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 8.9e-77 291.2 262 56.9
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 8.9e-77 291.2 271 59.0
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.2e-76 290.8 268 57.1
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 1.5e-76 290.4 270 60.4
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 1.5e-76 290.4 268 58.2
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 3.4e-76 289.3 257 60.7
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 4.4e-76 288.9 263 59.7
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.8e-76 288.5 256 60.5
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 5.8e-76 288.5 270 57.8
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.3e-75 287.3 270 58.1
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.7e-75 287.0 269 58.0
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.9e-75 286.2 269 56.9
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.1e-74 284.3 269 57.6
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.1e-74 284.3 264 59.5
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 3.2e-74 282.7 275 57.1
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 4.1e-74 282.3 269 55.4
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 4.1e-74 282.3 283 57.6
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 9.2e-74 281.2 269 56.5
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 1.2e-73 280.8 263 58.9
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 2.1e-73 280.0 270 55.2
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 2.1e-73 280.0 265 56.2
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 3.5e-73 279.3 268 54.9
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 7.8e-73 278.1 269 55.4
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.3e-72 277.3 269 56.9
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 3.0e-72 276.2 274 55.1
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.1e-71 274.2 270 54.4
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.5e-71 273.9 268 56.0
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.9e-71 273.5 272 55.9
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.9e-71 273.5 268 55.6
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 5.6e-71 271.9 274 55.5
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 5.6e-71 271.9 255 58.0
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 7.3e-71 271.6 276 54.3
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 9.6e-71 271.2 273 55.3
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 1.6e-70 270.4 274 55.1
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 1.6e-70 270.4 269 56.1
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 3.6e-70 269.2 269 53.2
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 1.4e-69 267.3 270 54.8
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 3.1e-69 266.2 263 56.7
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 4.4e-68 262.3 278 52.2
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 4.4e-68 262.3 278 52.2
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 4.4e-68 262.3 277 53.1
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 7.6e-68 261.5 272 52.9
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.7e-67 260.4 274 54.0
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.9e-67 258.8 270 50.4
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 4.9e-67 258.8 270 52.6
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 6.4e-67 258.5 281 51.2
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 6.4e-67 258.5 281 51.2
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 6.4e-67 258.5 281 51.2
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.4e-66 257.3 264 53.4
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.2e-66 256.1 250 53.6
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 4.2e-66 255.8 262 54.6
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.2e-65 254.2 271 52.8
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 1.6e-65 253.8 274 51.1
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.1e-65 253.4 235 60.9
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 2.5e-63 246.5 270 49.3
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 8.1e-62 241.5 273 49.5
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 2.9e-59 233.0 275 49.5
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 2.4e-58 229.9 296 46.3
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 2.4e-58 229.9 296 46.3
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.2e-57 227.6 268 47.4
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.8e-56 223.8 265 48.3
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 9.6e-55 218.0 266 47.0
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.6e-54 217.2 128 80.5
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.2e-52 211.1 234 50.4
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 4.6e-49 199.1 294 42.9
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.3e-48 197.6 213 52.1
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 5.1e-48 195.7 239 48.1
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 4.0e-45 186.0 221 47.1
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 2.2e-43 180.3 290 37.6
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 5.5e-42 175.6 283 41.3
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 1.8e-40 170.6 236 43.2
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 6.7e-40 168.7 296 36.8
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 6.7e-40 168.7 295 36.3
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.4e-37 161.0 127 63.8
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.4e-37 161.0 297 37.7
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 1.8e-37 160.6 166 51.8
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.5e-36 157.5 176 55.7
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 4.5e-36 156.0 274 36.1
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 2.9e-35 153.3 271 36.5
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.5e-34 150.2 129 55.8
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 2.5e-31 140.2 291 34.4
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.3e-31 139.8 80 85.0
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 6.3e-30 135.6 69 95.7
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.3e-30 135.6 70 94.3
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 2.0e-28 130.6 211 39.8
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 2.2e-27 127.1 230 36.5
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.3e-24 117.1 59 93.2
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.3e-24 117.1 72 76.4
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 9.1e-21 105.1 257 28.4
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 5.9e-20 102.4 65 75.4
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 4.2e-18 96.3 271 29.9
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 5.3e-13 79.3 264 25.8
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 2.9e-11 73.6 37 94.6
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.1e-10 71.6 34 88.2
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.1e-10 71.6 53 66.0
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 2.5e-10 70.5 82 52.4
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 5.5e-10 69.3 31 100.0
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.2e-09 68.2 265 24.5
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 2.1e-09 67.4 40 72.5
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.0e-08 65.1 53 64.2
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 1.4e-08 64.7 31 87.1
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.2e-07 61.6 44 75.0
HanXRQChr11g0344511 Helianthus annuus HOM05D003684 ORTHO05D004428 2.2e-06 57.4 57 50.9


User provided reference genes

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