Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 0.0e+00 1176.8 604 100.0
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 4.7e-306 1053.9 604 88.7
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 9.4e-299 1029.6 602 86.5
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 5.9e-285 983.8 637 79.9
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 3.7e-279 964.5 599 81.6
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.1e-278 963.0 599 80.5
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 9.2e-278 959.9 604 79.6
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 9.2e-278 959.9 597 80.7
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.7e-276 955.7 598 81.4
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 8.9e-273 943.3 601 78.2
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 4.4e-272 941.0 607 78.7
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 1.1e-270 936.4 600 78.2
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 4.1e-270 934.5 599 79.1
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 9.2e-270 933.3 616 76.5
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 6.0e-269 930.6 596 79.4
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 5.6e-267 924.1 602 77.7
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 7.3e-267 923.7 598 76.8
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 3.6e-266 921.4 599 77.5
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 8.1e-266 920.2 542 87.3
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 1.8e-265 919.1 605 76.9
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 8.9e-265 916.8 599 77.3
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 6.4e-263 910.6 629 74.2
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 5.4e-262 907.5 607 76.8
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 7.1e-262 907.1 599 75.3
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 8.6e-260 900.2 604 75.8
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.1e-259 899.8 601 75.5
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 3.1e-257 891.7 599 75.6
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 5.2e-257 891.0 600 73.7
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 2.6e-256 888.6 600 74.0
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 3.4e-256 888.3 600 73.7
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 7.8e-253 877.1 605 75.2
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.1e-251 873.2 604 75.3
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 1.2e-250 869.8 601 73.4
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 2.8e-250 868.6 606 73.6
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 5.2e-249 864.4 618 71.0
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 5.2e-249 864.4 602 74.4
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.7e-247 859.4 606 71.8
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 2.9e-247 858.6 600 72.8
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 3.8e-247 858.2 598 71.9
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.4e-246 856.3 606 71.8
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 4.2e-246 854.7 606 71.6
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 8.7e-244 847.0 610 71.6
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 3.3e-243 845.1 590 72.7
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 3.3e-243 845.1 603 72.0
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 5.6e-243 844.3 599 71.1
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 7.3e-243 844.0 603 71.6
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 7.3e-243 844.0 603 71.5
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 9.6e-243 843.6 604 71.9
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.6e-242 842.8 603 71.6
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 3.6e-242 841.6 603 71.6
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 6.2e-242 840.9 603 71.3
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.8e-241 839.3 596 71.5
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 4.0e-241 838.2 599 70.5
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.5e-240 836.3 603 70.1
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.2e-239 832.4 597 70.7
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 2.9e-239 832.0 579 73.1
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 4.9e-239 831.2 604 68.7
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 6.4e-239 830.9 599 69.4
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 6.4e-239 830.9 598 70.6
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 3.2e-238 828.6 598 69.2
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 3.5e-237 825.1 599 69.4
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 3.5e-237 825.1 603 69.5
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 6.0e-237 824.3 597 69.3
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 6.0e-237 824.3 606 70.0
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 7.9e-237 823.9 599 69.1
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 2.3e-236 822.4 603 69.7
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 3.0e-236 822.0 606 69.6
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 3.9e-236 821.6 599 69.3
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 6.7e-236 820.8 598 68.4
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 8.7e-236 820.5 605 67.4
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 1.5e-235 819.7 597 69.3
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 3.3e-235 818.5 572 71.0
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 1.3e-234 816.6 599 68.8
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.6e-234 816.2 601 69.6
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 2.0e-232 809.3 599 67.3
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 2.0e-232 809.3 613 67.2
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 6.4e-231 804.3 599 68.6
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.8e-228 796.2 609 67.3
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 8.7e-228 793.9 561 70.2
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 1.5e-227 793.1 609 66.8
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 4.3e-227 791.6 520 76.5
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 5.6e-227 791.2 606 66.5
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 9.6e-227 790.4 599 67.3
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 9.6e-227 790.4 601 67.6
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 4.8e-226 788.1 602 66.4
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.8e-225 786.2 605 66.8
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 5.3e-225 784.6 608 66.3
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 3.4e-224 781.9 609 65.4
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 1.3e-223 780.0 605 65.3
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.9e-222 776.2 595 65.5
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 1.9e-222 776.2 599 65.8
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 7.1e-222 774.2 598 64.9
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.8e-220 769.6 618 65.5
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 3.9e-220 768.5 608 64.3
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 6.7e-220 767.7 597 64.7
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 5.7e-219 764.6 606 65.5
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 1.8e-217 759.6 609 65.4
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.8e-217 759.6 607 66.1
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 5.3e-217 758.1 598 64.9
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.5e-216 756.5 537 69.1
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 2.9e-215 752.3 598 64.5
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 6.5e-215 751.1 606 63.9
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.9e-214 749.6 602 65.9
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.7e-213 745.7 599 65.6
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 8.8e-212 740.7 608 63.0
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 1.5e-211 740.0 604 65.7
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 2.2e-210 736.1 585 66.3
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.3e-209 731.5 597 64.2
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 5.9e-208 728.0 598 62.4
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 2.9e-207 725.7 597 63.5
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.9e-207 725.7 597 63.5
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.9e-207 725.7 597 63.8
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.1e-205 719.5 597 63.5
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 5.7e-203 711.4 596 62.2
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 8.2e-202 707.6 597 61.1
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 1.1e-195 687.2 597 59.0
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 5.3e-193 678.3 599 60.3
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 6.5e-191 671.4 603 61.5
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.5e-182 643.7 605 57.5
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 9.5e-174 614.4 602 53.2
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 1.2e-173 614.0 590 54.9
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 3.6e-173 612.5 620 53.2
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.3e-170 604.0 468 67.3
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 8.0e-165 584.7 443 67.9
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 2.4e-161 573.2 394 77.4
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 2.8e-157 559.7 597 50.4
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.5e-142 508.1 327 79.8
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.2e-141 507.7 726 43.9
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 9.6e-126 454.9 515 49.1
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.1e-124 451.4 321 69.8
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 3.4e-123 446.4 455 51.4
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 5.8e-123 445.7 628 41.9
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.9e-122 442.6 355 67.9
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.7e-117 426.4 358 64.2
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 7.9e-112 408.7 604 42.4
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 5.1e-87 326.2 267 64.4
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 4.1e-84 316.6 645 35.0
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 5.0e-74 283.1 486 39.7
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 3.6e-72 276.9 246 61.0
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 6.8e-71 272.7 183 77.6
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 2.0e-70 271.2 223 61.0
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 4.2e-65 253.4 162 74.7
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.6e-62 244.2 136 82.4
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 1.7e-50 204.9 391 38.6
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.7e-45 188.3 119 73.9
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 4.3e-41 173.7 126 68.3
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.3e-41 172.9 100 86.0
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.1e-40 171.4 100 85.0
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 6.8e-39 166.4 113 69.9
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 8.9e-39 166.0 113 69.0
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.7e-35 154.5 183 54.6
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 4.6e-35 153.7 135 63.0
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 8.1e-32 142.9 98 76.5
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 2.0e-30 138.3 216 41.2
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 1.3e-29 135.6 132 56.8
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.7e-29 135.2 80 77.5
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 6.6e-26 123.2 82 76.8
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 1.9e-25 121.7 181 47.5
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 4.7e-24 117.1 119 58.8
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 2.8e-16 91.3 65 64.6
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 1.2e-14 85.9 56 69.6
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 1.1e-12 79.3 82 51.2
TAR636G1761 Trochodendron aralioides HOM05D004159 ORTHO05D415208 2.4e-12 78.2 75 60.0
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 2.8e-08 64.7 41 73.2
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 3.6e-08 64.3 35 85.7
Sc03g0007490 Simmondsia chinensis HOM05D004159 ORTHO05D388831 3.6e-08 64.3 102 44.1
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 8.1e-08 63.2 159 31.4
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 2.4e-07 61.6 62 56.5


User provided reference genes

Program Settings