Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048862 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D028355 6.7e-69 263.8 129 100.0
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.7e-35 152.9 75 96.0
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 1.2e-33 146.7 75 92.0
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 3.5e-33 145.2 75 89.3
Cpa.g.sc566.1 Carica papaya HOM05D003128 ORTHO05D004333 7.7e-33 144.1 78 85.9
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 1.3e-32 143.3 75 89.3
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 2.3e-32 142.5 74 90.5
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 2.9e-32 142.1 75 88.0
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 3.8e-32 141.7 75 88.0
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 5.0e-32 141.4 75 88.0
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 5.0e-32 141.4 75 85.3
arahy.Tifrunner.gnm1.ann1.FV7J2W Arachis hypogaea HOM05D003128 ORTHO05D004333 6.5e-32 141.0 74 89.2
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 6.5e-32 141.0 75 85.3
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 6.5e-32 141.0 75 85.3
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 6.5e-32 141.0 75 85.3
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 8.6e-32 140.6 75 86.7
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 8.6e-32 140.6 75 85.3
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 1.1e-31 140.2 75 86.7
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 1.1e-31 140.2 75 85.3
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 1.5e-31 139.8 75 86.7
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 1.5e-31 139.8 75 86.7
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 1.5e-31 139.8 75 86.7
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 2.5e-31 139.0 75 86.7
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 5.5e-31 137.9 75 84.0
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 5.5e-31 137.9 75 85.3
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 5.5e-31 137.9 75 85.3
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 5.5e-31 137.9 75 85.3
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 5.5e-31 137.9 75 85.3
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 5.5e-31 137.9 75 86.7
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 7.2e-31 137.5 75 84.0
ClCG01G015970 Citrullus lanatus HOM05D003128 ORTHO05D004333 9.5e-31 137.1 75 85.3
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 9.5e-31 137.1 75 85.3
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.2e-30 136.7 75 85.3
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 1.2e-30 136.7 75 85.3
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 1.6e-30 136.3 71 90.1
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 2.1e-30 136.0 75 84.0
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 2.1e-30 136.0 75 84.0
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 2.1e-30 136.0 75 82.7
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 2.8e-30 135.6 75 81.3
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 2.8e-30 135.6 75 82.7
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 3.6e-30 135.2 75 84.0
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 3.6e-30 135.2 75 85.3
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 3.6e-30 135.2 75 84.0
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 4.7e-30 134.8 75 80.0
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 4.7e-30 134.8 75 84.0
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 4.7e-30 134.8 75 84.0
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 6.1e-30 134.4 75 84.0
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 8.0e-30 134.0 75 82.7
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 1.0e-29 133.7 75 82.7
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 1.4e-29 133.3 75 81.3
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 2.3e-29 132.5 75 81.3
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 2.3e-29 132.5 75 82.7
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 2.3e-29 132.5 79 77.2
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 3.0e-29 132.1 75 81.3
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 3.0e-29 132.1 75 82.7
Os12g0170700 Oryza sativa ssp. japonica HOM05D003128 ORTHO05D004333 4.0e-29 131.7 75 81.3
Psat1g070560 Pisum sativum HOM05D003128 ORTHO05D004333 6.8e-29 131.0 75 81.3
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 6.8e-29 131.0 79 75.9
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 8.8e-29 130.6 75 80.0
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 8.8e-29 130.6 75 76.0
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 8.8e-29 130.6 75 78.7
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 8.8e-29 130.6 75 78.7
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 1.5e-28 129.8 75 82.7
BcaC07g38567 Brassica carinata HOM05D003128 ORTHO05D004333 2.0e-28 129.4 75 77.3
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 2.0e-28 129.4 75 77.3
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 2.0e-28 129.4 75 77.3
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 2.0e-28 129.4 75 77.3
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 2.0e-28 129.4 75 77.3
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 2.0e-28 129.4 75 77.3
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 2.0e-28 129.4 75 78.7
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 2.0e-28 129.4 75 77.3
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 2.0e-28 129.4 75 81.3
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 2.6e-28 129.0 75 78.7
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 2.6e-28 129.0 75 81.3
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 2.6e-28 129.0 75 78.7
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 3.4e-28 128.6 75 78.7
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 3.4e-28 128.6 75 81.3
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 3.4e-28 128.6 75 78.7
Psat1g070640 Pisum sativum HOM05D003128 ORTHO05D004333 3.4e-28 128.6 75 80.0
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 3.4e-28 128.6 80 70.0
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 4.4e-28 128.3 75 77.3
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 4.4e-28 128.3 75 77.3
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 4.4e-28 128.3 75 80.0
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 5.7e-28 127.9 75 76.0
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 5.7e-28 127.9 75 77.3
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 5.7e-28 127.9 73 83.6
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 5.7e-28 127.9 75 80.0
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 7.5e-28 127.5 74 81.1
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 7.5e-28 127.5 75 80.0
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 7.5e-28 127.5 75 80.0
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 7.5e-28 127.5 75 77.3
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 9.8e-28 127.1 75 76.0
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 9.8e-28 127.1 75 76.0
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 9.8e-28 127.1 75 76.0
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 9.8e-28 127.1 75 77.3
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 9.8e-28 127.1 75 77.3
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.3e-27 126.7 75 76.0
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 1.7e-27 126.3 75 78.7
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.7e-27 126.3 75 76.0
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 1.7e-27 126.3 75 74.7
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 2.2e-27 125.9 75 76.0
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 2.8e-27 125.6 75 78.7
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 2.8e-27 125.6 75 77.3
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 3.7e-27 125.2 75 74.7
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 4.9e-27 124.8 75 73.3
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 4.9e-27 124.8 75 73.3
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 4.9e-27 124.8 75 77.3
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 6.3e-27 124.4 75 77.3
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 8.3e-27 124.0 75 73.3
ECA236G3006 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.4e-26 123.2 75 76.0
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.4e-26 123.2 74 77.0
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 1.8e-26 122.9 75 76.0
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 3.1e-26 122.1 75 76.0
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 1.2e-25 120.2 75 70.7
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.2e-25 120.2 84 69.0
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.2e-25 120.2 84 69.0
ECA236G2760 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.2e-25 120.2 73 75.3
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 1.6e-25 119.8 75 74.7
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 2.0e-25 119.4 62 88.7
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 2.7e-25 119.0 75 74.7
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 4.5e-25 118.2 84 67.9
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 4.5e-25 118.2 75 70.7
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 4.5e-25 118.2 75 70.7
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 5.9e-25 117.9 75 73.3
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 7.8e-25 117.5 75 72.0
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 7.8e-25 117.5 75 73.3
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 1.0e-24 117.1 75 74.7
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 1.0e-24 117.1 62 85.5
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 1.3e-24 116.7 75 69.3
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 3.8e-24 115.2 75 69.3
CsaV3_1G039600 Cucumis sativus L. HOM05D003128 ORTHO05D004333 6.6e-24 114.4 84 65.5
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 6.6e-24 114.4 75 68.0
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 1.9e-23 112.8 75 70.7
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 3.3e-23 112.1 75 68.0
HPP92_027495 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.3e-23 112.1 75 66.7
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.6e-22 109.8 75 68.0
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 1.6e-22 109.8 75 65.3
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 1.6e-22 109.8 75 66.7
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 4.7e-22 108.2 75 68.0
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 1.4e-21 106.7 74 66.2
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.8e-21 106.3 76 67.1
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 1.8e-21 106.3 75 62.7
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 2.3e-21 105.9 75 64.0
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 5.2e-21 104.8 74 64.9
Sc07g0006800 Simmondsia chinensis HOM05D003128 ORTHO05D004333 2.2e-19 99.4 61 75.4
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 3.7e-19 98.6 75 62.7
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 8.3e-19 97.4 74 63.5
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 1.8e-18 96.3 75 57.3
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 6.6e-16 87.8 76 55.3
PRCOL_00004456 Prasinoderma coloniale HOM05D003128 ORTHO05D004333 8.6e-16 87.4 77 58.4
MCO04G276 Micromonas commoda HOM05D003128 ORTHO05D004333 1.4e-13 80.1 73 52.1
Haze_27303 Corylus avellana HOM05D003128 ORTHO05D004333 2.6e-12 75.9 72 50.0
HanXRQChr15g0470541 Helianthus annuus HOM05D003128 ORTHO05D028355 4.4e-12 75.1 65 55.4
CsaV3_1G042320 Cucumis sativus L. HOM05D003128 ORTHO05D001951 5.8e-12 74.7 80 50.0
Sc07g0004050 Simmondsia chinensis HOM05D003128 ORTHO05D028355 4.1e-10 68.6 49 65.3
BolC8t52396H Brassica oleracea HOM05D003128 ORTHO05D028355 6.0e-09 64.7 51 58.8
ClCG03G013760 Citrullus lanatus HOM05D003128 ORTHO05D004333 6.6e-08 61.2 61 49.2


User provided reference genes

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