Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.1e-30 136.0 68 100.0
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.1e-27 125.9 68 95.6
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.1e-27 125.9 68 95.6
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 2.6e-27 124.8 67 92.5
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 7.4e-27 123.2 67 91.0
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 2.2e-26 121.7 67 86.6
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 4.8e-26 120.6 67 89.6
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 6.3e-26 120.2 67 91.0
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 8.2e-26 119.8 67 88.1
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 1.1e-25 119.4 67 85.1
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 1.1e-25 119.4 67 89.6
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 1.1e-25 119.4 67 91.0
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 1.4e-25 119.0 67 86.6
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 2.4e-25 118.2 67 88.1
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 3.1e-25 117.9 67 89.6
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 3.1e-25 117.9 67 89.6
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 4.1e-25 117.5 67 89.6
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 4.1e-25 117.5 67 89.6
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 4.1e-25 117.5 67 88.1
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 7.0e-25 116.7 67 88.1
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 7.0e-25 116.7 67 89.6
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 9.1e-25 116.3 67 86.6
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 9.1e-25 116.3 67 88.1
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 1.2e-24 115.9 67 85.1
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 1.2e-24 115.9 67 85.1
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 1.6e-24 115.5 67 86.6
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 1.6e-24 115.5 67 86.6
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.6e-24 115.5 67 88.1
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.6e-24 115.5 67 88.1
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.6e-24 115.5 67 88.1
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.6e-24 115.5 67 88.1
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 1.6e-24 115.5 67 88.1
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 1.6e-24 115.5 67 88.1
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.0e-24 115.2 67 89.6
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 2.0e-24 115.2 67 85.1
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 3.5e-24 114.4 67 85.1
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 4.5e-24 114.0 67 79.1
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 4.5e-24 114.0 67 86.6
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 4.5e-24 114.0 67 85.1
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 5.9e-24 113.6 67 85.1
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 5.9e-24 113.6 67 85.1
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 5.9e-24 113.6 67 80.6
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 5.9e-24 113.6 67 83.6
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 5.9e-24 113.6 67 83.6
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 5.9e-24 113.6 67 83.6
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 5.9e-24 113.6 67 83.6
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 5.9e-24 113.6 67 83.6
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 5.9e-24 113.6 67 86.6
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 1.0e-23 112.8 67 83.6
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 1.0e-23 112.8 67 83.6
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.0e-23 112.8 67 88.1
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 1.0e-23 112.8 67 88.1
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 1.0e-23 112.8 67 83.6
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.3e-23 112.5 67 83.6
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 1.3e-23 112.5 67 80.6
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 1.3e-23 112.5 67 82.1
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.3e-23 112.5 67 83.6
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 1.7e-23 112.1 67 82.1
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 1.7e-23 112.1 67 79.1
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 1.7e-23 112.1 67 83.6
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 2.2e-23 111.7 67 82.1
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 2.2e-23 111.7 67 82.1
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 2.2e-23 111.7 67 83.6
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 2.2e-23 111.7 67 82.1
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 2.2e-23 111.7 67 82.1
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 2.9e-23 111.3 69 84.1
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 2.9e-23 111.3 67 80.6
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 3.8e-23 110.9 67 83.6
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 3.8e-23 110.9 67 82.1
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 5.0e-23 110.5 67 80.6
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 5.0e-23 110.5 67 82.1
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 5.0e-23 110.5 67 82.1
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 5.0e-23 110.5 67 82.1
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 5.0e-23 110.5 67 82.1
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 5.0e-23 110.5 67 82.1
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 80.6
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 86.6
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 80.6
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 83.6
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 82.1
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 80.6
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 6.5e-23 110.2 67 80.6
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 8.5e-23 109.8 67 79.1
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 8.5e-23 109.8 67 82.1
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 8.5e-23 109.8 67 80.6
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 1.1e-22 109.4 67 82.1
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 1.5e-22 109.0 67 80.6
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.5e-22 109.0 67 79.1
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 1.9e-22 108.6 67 79.1
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 1.9e-22 108.6 67 82.1
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 1.9e-22 108.6 67 77.6
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 2.5e-22 108.2 67 80.6
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 3.2e-22 107.8 67 82.1
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 4.2e-22 107.5 67 77.6
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 4.2e-22 107.5 67 76.1
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 5.5e-22 107.1 67 82.1
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 5.5e-22 107.1 67 82.1
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 7.2e-22 106.7 67 79.1
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 7.2e-22 106.7 67 77.6
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 7.2e-22 106.7 67 79.1
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 9.4e-22 106.3 67 77.6
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.6e-21 105.5 67 82.1
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 2.1e-21 105.1 67 76.1
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 4.7e-21 104.0 67 74.6
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 4.7e-21 104.0 67 77.6
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 4.7e-21 104.0 67 77.6
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 4.7e-21 104.0 67 77.6
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 6.1e-21 103.6 67 74.6
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 8.0e-21 103.2 66 80.3
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 8.0e-21 103.2 67 77.6
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 1.0e-20 102.8 67 76.1
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 1.0e-20 102.8 67 74.6
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 1.0e-20 102.8 67 74.6
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 1.0e-20 102.8 67 74.6
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 1.0e-20 102.8 67 77.6
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 1.0e-20 102.8 67 77.6
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 1.4e-20 102.4 67 74.6
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 1.8e-20 102.1 67 74.6
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 1.8e-20 102.1 67 76.1
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 2.3e-20 101.7 67 73.1
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 2.3e-20 101.7 67 73.1
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 2.3e-20 101.7 67 73.1
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 2.3e-20 101.7 67 73.1
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 2.3e-20 101.7 67 73.1
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 2.3e-20 101.7 67 74.6
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 3.0e-20 101.3 67 76.1
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 3.0e-20 101.3 67 76.1
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 3.0e-20 101.3 67 71.6
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 3.0e-20 101.3 67 76.1
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 3.0e-20 101.3 67 71.6
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 3.0e-20 101.3 67 76.1
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.0e-20 101.3 67 76.1
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 3.0e-20 101.3 66 78.8
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 4.0e-20 100.9 67 74.6
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 6.8e-20 100.1 67 74.6
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 8.8e-20 99.8 67 73.1
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 8.8e-20 99.8 67 74.6
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 8.8e-20 99.8 67 74.6
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 8.8e-20 99.8 67 74.6
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 1.2e-19 99.4 67 76.1
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 1.2e-19 99.4 67 76.1
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 1.2e-19 99.4 67 74.6
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 1.5e-19 99.0 94 55.3
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 1.5e-19 99.0 67 74.6
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 2.0e-19 98.6 67 71.6
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 4.4e-19 97.4 67 73.1
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 7.5e-19 96.7 67 68.7
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 7.5e-19 96.7 67 70.1
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 4.1e-17 90.9 69 66.7
Lsat_1_v5_gn_9_36141 Lactuca sativa HOM05D001534 ORTHO05D004495 7.0e-17 90.1 53 83.0
Psat5g174000 Pisum sativum HOM05D001534 ORTHO05D004495 2.7e-16 88.2 49 85.7
Oeu007990.1 Olea europaea HOM05D001534 ORTHO05D004495 1.9e-14 82.0 49 81.6
Oeu019637.1 Olea europaea HOM05D001534 ORTHO05D004495 1.9e-14 82.0 49 83.7
arahy.Tifrunner.gnm1.ann1.UV2YJP Arachis hypogaea HOM05D001534 ORTHO05D004495 8.0e-13 76.6 67 62.7
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 1.4e-12 75.9 67 52.2
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 6.8e-12 73.6 66 57.6
Actinidia35374 Actinidia chinensis HOM05D001534 ORTHO05D004495 8.8e-12 73.2 49 77.6
CsaV3_1G040420 Cucumis sativus L. HOM05D001534 ORTHO05D004495 1.2e-11 72.8 35 94.3
A03p56890 Brassica napus HOM05D001534 ORTHO05D004495 3.4e-11 71.2 49 69.4
Nn5g26968 Nelumbo nucifera HOM05D001534 ORTHO05D004495 3.4e-11 71.2 67 61.2
FAN25G3175 Fragaria x ananassa HOM05D001534 ORTHO05D004495 5.7e-11 70.5 58 63.8
Hma1.2p1_3177F.1_g333625 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 9.8e-11 69.7 49 73.5
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 9.8e-11 69.7 66 48.5
CBR_g41757 Chara braunii HOM05D001534 ORTHO05D004495 2.8e-10 68.2 65 49.2
Rhsim06G0224400 Rhododendron simsii HOM05D002795 ORTHO05D003219 3.7e-10 67.8 35 88.6
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 6.3e-10 67.0 34 94.1
A01p17980 Brassica napus HOM05D001534 ORTHO05D004495 1.1e-09 66.2 36 83.3
BraA01t01753Z Brassica rapa HOM05D001534 ORTHO05D004495 1.1e-09 66.2 36 83.3
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 1.8e-09 65.5 66 47.0
AagrBONN_evm.TU.Sc2ySwM_368.1120 Anthoceros agrestis HOM05D001534 ORTHO05D004495 2.4e-09 65.1 65 49.2
Lalb_Chr20g0115821 Lupinus albus HOM05D001534 ORTHO05D004495 6.6e-07 57.0 34 79.4
Mapoly0058s0087 Marchantia polymorpha HOM05D001534 ORTHO05D004495 1.1e-06 56.2 65 41.5
SGA_v2.0_scaffold478G52224 Striga asiatica HOM05D001534 ORTHO05D004495 1.1e-06 56.2 34 85.3


User provided reference genes

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