Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1765.0 918 100.0
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1288.1 932 76.0
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1276.5 932 75.4
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 0.0e+00 1223.8 939 72.3
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 0.0e+00 1206.0 938 71.4
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 0.0e+00 1140.6 909 69.6
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 0.0e+00 1138.3 924 70.6
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.6e-305 1051.2 946 63.7
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 9.0e-293 1010.4 1012 58.4
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.7e-291 1006.1 949 61.5
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.6e-289 999.6 950 59.8
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.4e-287 990.7 785 71.2
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 9.6e-287 990.3 956 60.1
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.8e-286 988.8 948 60.2
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 2.8e-286 988.8 954 61.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 3.7e-286 988.4 956 60.5
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.8e-285 986.1 952 60.7
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 6.9e-285 984.2 952 59.8
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 7.6e-284 980.7 949 58.7
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.1e-282 976.9 1002 57.2
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.0e-280 968.8 933 62.3
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 6.3e-278 961.1 953 58.1
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 5.9e-276 954.5 955 59.5
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 3.2e-274 948.7 953 57.6
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-273 945.7 948 59.2
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.4e-272 943.3 948 59.1
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.2e-270 934.1 941 59.1
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.1e-269 931.8 954 57.5
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 4.5e-268 928.3 944 57.5
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.5e-268 928.3 954 57.3
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.7e-268 927.5 954 57.2
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-266 923.3 947 58.2
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.4e-266 923.3 957 55.7
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.1e-265 919.5 954 57.2
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.0e-264 917.1 944 58.1
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.0e-263 912.9 940 58.0
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 4.4e-263 911.8 680 75.1
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 4.1e-261 905.2 967 58.0
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.4e-256 890.2 955 56.0
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 5.3e-253 878.2 885 57.3
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.2e-252 877.1 953 55.0
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.5e-252 875.2 952 54.1
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 5.0e-251 871.7 938 54.4
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.5e-251 871.3 954 53.7
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.6e-249 866.7 952 54.6
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 8.0e-249 864.4 952 55.0
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-248 863.6 950 53.8
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 8.8e-248 860.9 940 57.1
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 8.8e-248 860.9 984 55.7
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 9.7e-247 857.4 922 55.4
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 9.7e-247 857.4 952 54.4
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 1.8e-245 853.2 949 54.8
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.8e-243 845.5 895 54.1
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-242 844.0 953 52.6
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.9e-242 843.2 895 53.6
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.5e-242 842.8 895 53.6
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 4.2e-242 842.0 921 55.2
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.0e-240 837.4 949 52.5
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.8e-238 829.3 981 53.2
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 3.7e-238 828.9 954 51.7
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.1e-237 825.9 905 55.1
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 3.8e-235 818.9 883 54.9
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 6.6e-235 818.1 893 54.1
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 4.2e-234 815.5 911 55.3
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 9.5e-234 814.3 881 55.2
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 4.7e-233 812.0 945 54.2
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 4.0e-232 808.9 881 54.6
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.6e-231 806.2 918 52.9
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.2e-228 797.3 917 53.9
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 1.0e-227 794.3 948 51.1
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.0e-227 794.3 843 55.0
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.3e-227 793.9 916 53.2
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 2.5e-226 789.6 953 52.4
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 7.3e-226 788.1 937 52.1
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.4e-224 783.9 834 55.2
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.6e-223 779.6 907 52.7
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.6e-223 779.6 923 52.0
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 4.4e-223 778.9 951 51.3
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.3e-222 777.3 923 51.8
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-221 773.9 942 51.4
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 3.6e-217 759.2 1022 47.9
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.7e-217 758.8 696 64.2
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.4e-216 757.3 950 50.2
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 2.3e-216 756.5 923 50.8
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.0e-215 753.4 928 50.5
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 8.3e-214 748.0 944 50.3
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.3e-211 740.7 932 49.9
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.7e-211 740.3 936 50.5
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 3.3e-210 736.1 932 50.2
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.1e-208 731.1 982 48.7
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.5e-207 727.2 905 51.2
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 4.9e-206 722.2 961 48.0
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.9e-205 720.3 898 49.6
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 7.1e-205 718.4 920 48.7
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 4.6e-204 715.7 889 50.7
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 6.0e-204 715.3 925 49.7
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.0e-204 715.3 877 51.0
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 3.1e-200 703.0 923 49.3
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 7.1e-197 691.8 615 64.6
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 7.1e-197 691.8 903 50.5
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.8e-192 677.2 875 49.8
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 6.9e-192 675.2 927 49.8
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.9e-189 667.2 678 56.9
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.9e-189 667.2 896 47.0
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 4.0e-184 649.4 913 47.0
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.0e-184 649.4 954 45.2
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 3.2e-181 639.8 931 45.8
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.8e-177 626.7 915 48.1
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.4e-176 624.4 872 46.1
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 9.0e-176 621.7 920 44.5
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.9e-174 616.7 867 45.9
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.5e-173 613.6 863 43.3
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 1.2e-172 611.3 948 43.4
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 2.1e-172 610.5 870 45.6
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.5e-170 603.6 917 43.2
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.0e-167 594.0 927 44.2
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.3e-166 591.3 920 44.7
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.9e-166 590.1 701 50.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 2.9e-166 590.1 856 46.8
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.2e-164 584.7 689 54.3
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.4e-160 571.2 872 43.9
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.4e-159 566.6 875 44.8
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 4.5e-159 566.2 873 43.6
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 4.5e-159 566.2 873 43.6
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 7.7e-159 565.5 933 42.9
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.7e-158 564.3 931 43.3
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 7.2e-157 558.9 936 42.3
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.8e-155 554.3 505 61.4
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 7.4e-154 548.9 787 44.3
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 8.2e-153 545.4 875 42.7
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-151 541.6 925 41.3
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 2.0e-151 540.8 925 41.3
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.8e-147 527.7 925 40.2
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.5e-146 524.6 953 40.2
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.6e-146 523.9 925 40.6
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 5.5e-141 506.1 819 42.1
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 8.0e-140 502.3 635 49.8
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 4.0e-139 500.0 464 62.7
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.8e-137 493.8 1007 38.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 2.4e-136 490.7 871 39.7
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 4.4e-130 469.9 866 42.3
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 6.5e-126 456.1 876 41.6
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.5e-125 454.1 895 37.7
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.0e-124 449.1 334 73.4
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.2e-119 435.3 435 57.5
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 4.1e-112 410.2 537 47.9
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 2.8e-108 397.5 611 45.0
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.7e-97 361.7 936 34.3
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.1e-93 349.0 1024 34.5
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 6.6e-86 323.2 454 48.0
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 3.1e-83 314.3 289 60.2
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.9e-81 307.0 840 32.6
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.4e-80 304.7 797 32.7
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 5.3e-75 287.0 971 30.0
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.6e-74 284.6 385 46.8
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.9e-72 278.5 819 31.9
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.0e-62 246.1 356 44.4
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.8e-62 245.4 419 43.2
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 7.6e-58 229.9 288 49.3
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.0e-54 219.5 226 56.6
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.3e-54 219.2 762 30.1
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 9.0e-51 206.5 282 48.6
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.3e-49 202.6 499 32.5
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.7e-44 184.5 243 45.3
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.2e-42 179.5 111 73.0
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.9e-42 177.2 565 31.2
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 7.2e-40 170.2 187 51.3
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 5.0e-33 147.5 98 67.3
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.3e-29 134.8 265 39.6
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 5.3e-27 127.5 150 50.0
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.7e-26 123.6 110 59.1
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 5.0e-25 120.9 222 39.2
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 8.0e-23 113.6 90 74.4
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-20 106.3 118 52.5
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 5.9e-18 97.4 153 40.5
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 9.4e-16 90.1 94 50.0
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.2e-13 83.2 125 38.4
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.2e-13 83.2 112 42.0
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.8e-12 78.6 47 72.3
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 4.1e-11 74.7 122 37.7
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 8.6e-09 67.0 121 32.2
Medtr2g449940 Medicago truncatula HOM05D003655 ORTHO05D004065 2.1e-07 62.4 89 46.1
Hund13661 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.4e-06 59.7 71 59.2
AUR62012685 Chenopodium quinoa HOM05D000561 ORTHO05D000514 8.8e-06 57.0 126 33.3
AUR62021972 Chenopodium quinoa HOM05D000561 ORTHO05D000514 8.8e-06 57.0 126 33.3


User provided reference genes

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