Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1436.8 716 100.0
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1424.1 716 99.0
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1207.2 720 82.6
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 0.0e+00 1177.2 722 80.3
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 0.0e+00 1164.8 723 79.5
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 0.0e+00 1161.4 718 78.8
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 0.0e+00 1136.7 725 75.7
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 0.0e+00 1134.8 713 77.3
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 0.0e+00 1132.1 717 77.4
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 0.0e+00 1130.2 706 80.9
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 0.0e+00 1129.4 723 77.0
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 0.0e+00 1125.2 722 76.5
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 0.0e+00 1123.2 710 76.8
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 0.0e+00 1123.2 717 77.8
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 0.0e+00 1120.9 725 75.3
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1115.9 716 76.4
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 0.0e+00 1114.4 716 76.3
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1112.1 717 77.0
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 0.0e+00 1109.7 716 76.4
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 0.0e+00 1107.4 717 76.7
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 0.0e+00 1100.1 725 75.9
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 0.0e+00 1098.6 727 74.4
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 0.0e+00 1097.8 717 75.3
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 0.0e+00 1094.3 717 74.3
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1090.1 724 74.2
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1089.7 727 74.0
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 0.0e+00 1087.8 719 73.9
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1087.0 717 75.7
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 0.0e+00 1085.9 720 73.6
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1085.1 724 73.5
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 0.0e+00 1085.1 721 73.8
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 0.0e+00 1083.9 721 73.9
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 0.0e+00 1083.9 714 73.5
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 0.0e+00 1080.9 715 73.6
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 0.0e+00 1079.3 720 73.8
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 0.0e+00 1078.5 984 61.2
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 0.0e+00 1077.4 716 77.8
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 0.0e+00 1077.4 723 73.2
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 0.0e+00 1077.0 720 74.0
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 0.0e+00 1075.1 659 79.7
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 4.9e-312 1073.9 720 74.0
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 9.8e-312 1073.2 716 72.8
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 9.8e-312 1072.8 716 72.8
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 5.9e-311 1070.5 722 73.3
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 9.8e-311 1069.7 717 72.7
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.7e-310 1068.9 713 74.2
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 8.2e-310 1066.6 707 73.4
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.2e-308 1062.8 716 73.2
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.7e-307 1058.9 711 73.4
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 9.4e-306 1053.1 719 70.1
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 4.0e-304 1047.7 716 70.3
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 7.5e-303 1043.5 723 71.6
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 9.8e-303 1043.1 717 71.4
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.7e-302 1042.3 720 72.2
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.1e-301 1039.6 716 69.7
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 9.1e-301 1036.6 715 69.7
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.2e-300 1036.2 719 69.1
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.7e-299 1032.3 724 72.1
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 3.8e-299 1031.2 736 69.8
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 3.8e-299 1031.2 722 69.5
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 4.2e-298 1027.7 716 69.4
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 3.6e-297 1024.6 732 67.6
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 6.1e-297 1023.8 720 70.6
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.8e-296 1022.3 721 68.1
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 1.8e-296 1022.3 652 75.9
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 4.0e-296 1021.1 721 68.1
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 4.0e-296 1021.1 717 68.3
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 5.2e-296 1020.8 721 68.2
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 3.4e-295 1018.1 723 70.4
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 4.4e-295 1017.7 730 71.0
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 7.5e-295 1016.9 721 67.5
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 8.3e-294 1013.4 723 68.6
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 1.1e-293 1013.1 728 69.5
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.8e-293 1012.3 634 77.9
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 5.4e-293 1010.7 719 69.0
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 2.6e-287 991.9 719 68.4
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 9.2e-285 983.4 728 66.5
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 2.1e-281 972.2 584 81.3
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 4.7e-281 971.1 542 87.3
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 3.1e-280 968.4 724 65.9
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 2.2e-278 962.2 709 68.3
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 2.9e-278 961.8 647 72.3
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 8.6e-275 950.3 653 70.8
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 1.1e-274 949.9 720 66.5
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 1.9e-274 949.1 726 65.6
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.4e-272 943.0 978 57.0
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 6.0e-268 927.5 724 63.0
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 1.2e-265 919.8 629 72.2
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 4.7e-265 917.9 589 74.5
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 4.7e-265 917.9 625 72.3
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 4.2e-261 904.8 730 61.4
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 9.3e-261 903.7 734 61.3
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 2.8e-257 892.1 871 55.1
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 4.9e-254 881.3 568 74.6
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 7.1e-253 877.5 724 62.4
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 3.4e-223 778.9 721 58.4
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.7e-201 706.8 453 76.2
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 8.3e-193 677.9 483 69.4
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 1.6e-183 647.1 730 47.1
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.4e-170 602.4 447 69.1
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 3.9e-166 589.3 701 44.5
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 1.6e-164 583.9 363 76.9
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 9.9e-154 548.1 639 44.9
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 1.2e-138 498.0 380 62.1
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 6.3e-108 396.0 275 67.3
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 2.7e-103 380.6 226 83.6
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 7.9e-103 379.0 254 74.4
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 2.9e-89 334.0 266 62.0
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 1.7e-84 318.2 291 58.1
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.7e-76 290.4 167 89.2
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 1.1e-72 278.9 292 52.1
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 1.0e-62 245.7 149 73.2
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 7.5e-45 186.4 154 64.3
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.7e-44 185.3 280 39.6
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.4e-38 165.6 280 36.8
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.5e-37 162.2 209 42.1
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 3.0e-33 147.9 130 62.3
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.9e-32 145.2 103 72.8
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 3.6e-31 141.0 107 70.1
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 4.0e-30 137.5 112 57.1
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 6.9e-30 136.7 98 69.4
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 9.9e-29 132.9 169 41.4
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-28 132.5 82 76.8
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 6.4e-28 130.2 155 42.6
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.9e-27 128.6 82 75.6
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.7e-26 124.8 98 60.2
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 2.8e-23 114.8 83 62.7
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 6.2e-23 113.6 72 79.2
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 1.5e-21 109.0 109 53.2
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 7.6e-21 106.7 75 76.0
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 6.4e-20 103.6 61 77.0
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.4e-19 102.4 66 72.7
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 3.2e-19 101.3 69 66.7
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 1.6e-18 99.0 109 50.5
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 4.6e-18 97.4 109 49.5
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 6.0e-18 97.1 79 64.6
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 1.1e-16 92.8 129 42.6
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 2.5e-16 91.7 55 83.6
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.1e-15 88.6 65 69.2
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 2.1e-15 88.6 77 54.5
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-15 88.2 254 29.5
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 8.1e-15 86.7 618 21.5
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 6.9e-14 83.6 57 70.2
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 4.5e-13 80.9 57 68.4
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 4.5e-13 80.9 57 68.4
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 4.5e-13 80.9 171 29.2
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 7.6e-13 80.1 55 63.6
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.7e-12 79.0 70 57.1
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 8.4e-12 76.6 57 64.9
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 9.3e-11 73.2 48 75.0
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 1.6e-10 72.4 53 67.9
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 2.3e-09 68.6 335 20.0
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 3.9e-09 67.8 72 55.6
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 6.7e-09 67.0 56 60.7
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 1.4e-06 59.3 51 60.8
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 9.0e-06 56.6 33 69.7


User provided reference genes

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