Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048234 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 4.6e-100 367.9 182 100.0
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 1.1e-80 303.5 180 82.2
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 2.2e-78 295.8 181 81.2
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 5.5e-77 291.2 180 78.9
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 5.5e-77 291.2 177 81.4
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 5.5e-77 291.2 177 81.4
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 7.2e-77 290.8 179 79.3
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 9.4e-77 290.4 177 81.4
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 9.4e-77 290.4 178 80.3
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 1.2e-76 290.0 178 80.3
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 1.6e-76 289.7 178 82.0
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 3.6e-76 288.5 178 79.8
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 3.6e-76 288.5 177 80.2
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.1e-76 287.7 174 81.6
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 1.0e-75 287.0 177 80.2
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 1.0e-75 287.0 178 79.2
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 1.0e-75 287.0 178 78.7
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 1.8e-75 286.2 178 78.1
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 1.8e-75 286.2 178 78.1
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 3.0e-75 285.4 180 78.9
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 4.0e-75 285.0 177 79.7
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 5.2e-75 284.6 177 80.2
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 8.8e-75 283.9 177 78.0
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 8.8e-75 283.9 177 80.2
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.2e-74 283.5 177 79.1
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 1.5e-74 283.1 178 79.2
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 1.5e-74 283.1 177 79.7
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 2.6e-74 282.3 177 79.1
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 3.4e-74 282.0 177 78.0
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 3.4e-74 282.0 177 78.0
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 3.4e-74 282.0 178 78.1
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 4.4e-74 281.6 178 75.3
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 7.5e-74 280.8 178 77.0
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 1.3e-73 280.0 174 79.9
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 1.7e-73 279.6 178 78.7
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 4.8e-73 278.1 178 78.7
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 6.3e-73 277.7 180 78.9
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.3e-73 277.7 171 80.7
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 8.3e-73 277.3 178 78.1
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 1.1e-72 276.9 178 75.8
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 1.1e-72 276.9 178 78.7
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 3.1e-72 275.4 178 78.1
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 3.1e-72 275.4 178 75.8
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 4.1e-72 275.0 178 76.4
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 7.0e-72 274.2 178 75.8
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 7.0e-72 274.2 172 79.7
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 9.1e-72 273.9 180 74.4
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.0e-71 272.7 178 77.0
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 2.9e-70 268.9 176 74.4
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 3.8e-70 268.5 194 70.1
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 5.0e-70 268.1 180 73.3
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 5.0e-70 268.1 179 72.6
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 6.5e-70 267.7 180 72.8
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 1.5e-69 266.5 179 74.3
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 1.9e-69 266.2 179 72.1
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.5e-69 265.8 175 73.1
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 1.2e-68 263.5 165 77.6
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 2.7e-68 262.3 176 72.7
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 4.7e-68 261.5 179 72.6
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 8.0e-68 260.8 173 72.8
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 1.0e-67 260.4 173 73.4
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 3.0e-67 258.8 179 72.6
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 5.2e-67 258.1 179 72.6
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 1.2e-66 256.9 176 72.2
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 4.4e-66 255.0 184 68.5
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 9.8e-66 253.8 178 70.8
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.3e-65 253.4 154 81.2
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 8.3e-65 250.8 175 70.9
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 1.8e-64 249.6 184 67.9
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 4.1e-64 248.4 177 71.8
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 2.0e-63 246.1 180 70.0
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 7.7e-63 244.2 183 66.1
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 1.0e-62 243.8 180 66.1
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 1.7e-62 243.0 182 66.5
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 1.7e-62 243.0 181 68.0
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 2.3e-62 242.7 176 67.0
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 2.9e-62 242.3 152 77.6
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 5.0e-62 241.5 180 63.9
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 8.6e-62 240.7 178 66.3
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.1e-61 240.4 177 63.8
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 1.1e-61 240.4 181 67.4
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 5.6e-61 238.0 196 64.3
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 6.1e-60 234.6 177 69.5
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 2.3e-59 232.6 180 66.1
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.0e-59 232.3 175 67.4
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 2.6e-58 229.2 180 66.1
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 3.4e-58 228.8 182 63.7
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 3.4e-58 228.8 178 64.6
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 1.7e-57 226.5 179 62.0
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 4.9e-57 224.9 179 62.0
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 1.1e-56 223.8 181 61.9
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 1.8e-56 223.0 176 61.9
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 9.2e-56 220.7 180 62.2
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 9.2e-56 220.7 176 61.9
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 1.2e-55 220.3 176 61.4
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 4.6e-55 218.4 178 60.7
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 5.9e-55 218.0 176 61.9
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 5.9e-55 218.0 176 61.9
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 5.9e-55 218.0 176 60.8
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 7.8e-55 217.6 179 60.9
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 7.8e-55 217.6 178 60.7
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 7.8e-55 217.6 179 60.9
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 7.8e-55 217.6 179 60.9
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.3e-54 216.9 176 60.8
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 1.3e-54 216.9 176 60.2
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 2.3e-54 216.1 176 61.9
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 5.0e-54 214.9 180 61.1
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 6.6e-54 214.5 173 60.7
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 2.5e-53 212.6 181 57.5
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 2.5e-53 212.6 180 60.0
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 4.3e-53 211.8 178 60.7
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 3.1e-51 205.7 176 54.0
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 2.4e-48 196.1 165 62.4
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 1.6e-47 193.4 177 54.2
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 2.8e-44 182.6 107 85.0
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 1.4e-40 170.2 132 62.1
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 4.7e-36 155.2 135 62.2
SEGI_21626 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 2.6e-34 149.4 107 67.3
Sabra16G0299500 Salix brachista HOM05D003481 ORTHO05D000002 1.3e-33 147.1 173 46.8
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 1.9e-32 143.3 180 46.1
CBR_g45268 Chara braunii HOM05D003481 ORTHO05D004001 1.0e-30 137.5 105 63.8
Actinidia29308 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.2e-28 130.6 75 84.0
Haze_05980 Corylus avellana HOM05D003481 ORTHO05D004001 9.9e-26 120.9 74 77.0
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 9.0e-19 97.8 123 43.1
SHI31587 Sapria himalayana HOM05D003481 ORTHO05D004001 3.4e-18 95.9 54 81.5
SEGI_05968 Sequoiadendron giganteum HOM05D003481 ORTHO05D011771 7.1e-16 88.2 64 65.6
arahy.Tifrunner.gnm1.ann1.16LSI5 Arachis hypogaea HOM05D003481 ORTHO05D004001 1.5e-13 80.5 49 75.5
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 2.1e-12 76.6 112 41.1
RcHm_v2.0_Chr7g0240301 Rosa chinensis HOM05D003481 ORTHO05D004001 5.8e-10 68.6 41 75.6
HanXRQChr17g0556701 Helianthus annuus HOM05D003481 ORTHO05D004001 7.1e-08 61.6 77 48.1
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 1.2e-07 60.8 115 33.9
Nitab4.5_0001298g0060 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.2e-07 60.8 108 38.9
Cfa023843 Carpinus fangiana HOM05D003481 ORTHO05D004001 3.5e-07 59.3 123 29.3
MCO09G025 Micromonas commoda HOM05D003481 ORTHO05D004001 7.9e-07 58.2 140 30.7
Lsat_1_v5_gn_2_79640 Lactuca sativa HOM05D003481 ORTHO05D004001 3.9e-06 55.8 80 42.5


User provided reference genes

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