Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 4.3e-71 271.2 133 100.0
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 7.6e-68 260.4 136 94.9
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 1.0e-67 260.0 136 94.9
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.7e-67 259.2 136 94.9
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 1.1e-66 256.5 136 93.4
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 1.4e-66 256.1 136 95.6
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.9e-66 255.8 136 95.6
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 2.5e-66 255.4 128 98.4
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 3.2e-66 255.0 136 94.1
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 4.2e-66 254.6 128 97.7
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 4.2e-66 254.6 136 94.9
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 5.5e-66 254.2 130 94.6
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.5e-66 254.2 130 94.6
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.5e-66 254.2 130 94.6
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 5.5e-66 254.2 133 94.0
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 5.5e-66 254.2 130 94.6
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 7.1e-66 253.8 133 93.2
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 7.1e-66 253.8 130 94.6
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 9.3e-66 253.4 128 96.9
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 9.3e-66 253.4 133 93.2
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 1.2e-65 253.1 128 96.9
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.6e-65 252.7 131 94.7
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.1e-65 252.3 128 94.5
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 2.7e-65 251.9 128 95.3
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 3.5e-65 251.5 128 94.5
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.0e-65 250.8 130 93.8
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.0e-64 250.0 133 91.7
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.0e-64 250.0 133 91.7
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 1.0e-64 250.0 133 91.0
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 1.3e-64 249.6 136 91.9
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 1.8e-64 249.2 131 93.9
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.0e-64 248.4 128 94.5
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.0e-64 248.4 128 94.5
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 5.1e-64 247.7 133 91.0
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 6.7e-64 247.3 131 93.9
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 6.7e-64 247.3 130 93.8
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 1.1e-63 246.5 137 91.2
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.1e-63 246.5 133 89.5
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.1e-63 246.5 131 92.4
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 1.5e-63 246.1 136 91.2
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.9e-63 245.7 136 92.6
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.9e-63 245.7 136 92.6
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 2.5e-63 245.4 130 91.5
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 2.5e-63 245.4 133 90.2
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 3.3e-63 245.0 128 92.2
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.3e-63 245.0 133 89.5
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.3e-63 244.6 128 92.2
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 5.7e-63 244.2 131 93.1
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.3e-62 243.0 133 88.7
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 1.6e-62 242.7 133 88.7
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 2.2e-62 242.3 128 91.4
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 2.2e-62 242.3 129 90.7
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.8e-62 241.9 128 93.8
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.8e-62 241.9 128 92.2
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.7e-62 241.5 128 92.2
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 6.3e-62 240.7 132 87.9
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 8.2e-62 240.4 138 88.4
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 1.4e-61 239.6 133 88.7
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 1.4e-61 239.6 136 89.0
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.8e-61 239.2 133 88.7
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.8e-61 239.2 131 88.5
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.4e-61 238.8 133 88.0
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.1e-61 238.4 153 79.1
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 4.1e-61 238.0 133 88.0
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 4.1e-61 238.0 133 89.5
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 5.3e-61 237.7 136 86.8
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 5.3e-61 237.7 131 90.1
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 9.0e-61 236.9 128 90.6
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 86.0
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 88.2
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 1.5e-60 236.1 128 89.8
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 2.0e-60 235.7 136 87.5
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.0e-60 235.7 136 86.0
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 2.6e-60 235.3 136 86.0
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 2.6e-60 235.3 131 87.8
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 2.6e-60 235.3 131 87.8
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 2.6e-60 235.3 131 87.8
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 3.4e-60 235.0 136 85.3
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 4.5e-60 234.6 128 89.1
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 5.9e-60 234.2 131 87.0
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 7.7e-60 233.8 133 87.2
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 1.3e-59 233.0 128 89.1
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 86.0
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 86.0
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 86.0
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 2.2e-59 232.3 136 86.0
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 3.8e-59 231.5 136 86.0
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 5.0e-59 231.1 131 87.0
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.4e-58 229.6 128 86.7
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.4e-58 229.6 128 86.7
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.4e-58 229.6 136 86.0
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.9e-58 229.2 133 82.7
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 1.2e-57 226.5 131 85.5
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 2.1e-57 225.7 125 86.4
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.9e-56 221.5 128 83.6
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 2.0e-55 219.2 186 64.0
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 3.3e-55 218.4 132 81.1
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 5.7e-55 217.6 160 71.9
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.7e-54 216.1 160 71.2
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.1e-53 213.4 128 80.5
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.1e-53 211.8 128 80.5
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.3e-51 206.5 128 77.3
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 6.5e-51 204.1 132 81.8
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 8.5e-51 203.8 127 76.4
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 5.5e-50 201.1 200 57.0
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 9.4e-50 200.3 123 79.7
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 2.7e-49 198.7 136 78.7
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.1e-49 197.6 130 79.2
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 4.4e-47 191.4 102 88.2
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 3.7e-46 188.3 128 66.4
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 3.7e-46 188.3 123 70.7
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.4e-45 186.4 128 65.6
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 4.1e-45 184.9 129 74.4
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 3.5e-44 181.8 127 69.3
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.6e-41 172.9 136 71.3
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 1.6e-41 172.9 123 69.1
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 4.7e-41 171.4 128 63.3
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 2.6e-39 165.6 93 90.3
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.8e-38 162.2 79 94.9
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.8e-37 159.5 88 89.8
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.1e-37 158.3 87 89.7
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 2.6e-36 155.6 133 66.9
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.5e-36 155.2 89 84.3
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 5.9e-36 154.5 88 86.4
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.7e-36 154.1 80 87.5
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.9e-34 149.4 80 86.2
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.9e-34 149.4 88 83.0
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 8.0e-33 144.1 83 85.5
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 1.8e-32 142.9 83 84.3
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 1.8e-32 142.9 83 84.3
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 5.2e-32 141.4 71 91.5
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-31 139.4 75 85.3
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.6e-31 139.0 84 81.0
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.4e-31 138.3 82 82.9
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.8e-30 135.6 85 82.4
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.8e-30 134.8 89 78.7
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 8.3e-30 134.0 105 71.4
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-29 133.7 68 89.7
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.5e-26 122.5 65 86.2
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 7.0e-21 104.4 83 63.9
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.6e-20 103.2 88 61.4
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 6.1e-17 91.3 46 87.0
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.0e-16 90.5 73 60.3
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 2.3e-16 89.4 45 86.7
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 3.2e-13 79.0 56 73.2
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 1.9e-10 69.7 41 75.6
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.7e-09 65.1 47 70.2
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 8.0e-09 64.3 42 76.2


User provided reference genes

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