Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.1e-57 223.4 104 100.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.3e-54 216.1 104 95.2
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.2e-54 215.3 104 95.2
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.9e-54 214.2 104 94.2
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.5e-52 208.0 104 92.3
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 4.0e-48 194.5 104 84.6
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 5.4e-45 184.1 104 79.8
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 9.3e-45 183.3 104 80.8
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.5e-44 181.4 104 78.8
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 2.1e-41 172.2 106 75.5
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.9e-39 163.3 104 76.0
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 6.4e-38 160.6 99 72.7
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 4.2e-37 157.9 103 70.9
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.3e-37 156.8 104 74.0
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.1e-36 155.6 104 71.2
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 4.6e-36 154.5 105 72.4
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 6.0e-36 154.1 104 70.2
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 7.9e-36 153.7 104 66.3
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.0e-35 153.3 105 70.5
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.0e-35 151.8 104 69.2
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 3.0e-35 151.8 105 71.4
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 3.9e-35 151.4 106 71.7
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 3.9e-35 151.4 104 69.2
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 5.1e-35 151.0 104 67.3
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 8.7e-35 150.2 104 69.2
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 2.5e-34 148.7 104 63.5
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 3.3e-34 148.3 104 65.4
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 7.4e-34 147.1 104 68.3
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 9.6e-34 146.7 104 68.3
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.6e-33 146.0 104 68.3
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 3.7e-33 144.8 103 62.1
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 3.7e-33 144.8 103 62.1
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.8e-32 142.5 104 62.5
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 4.0e-32 141.4 104 64.4
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 5.3e-32 141.0 104 61.5
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 6.9e-32 140.6 104 67.3
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 2.6e-31 138.7 105 61.9
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 3.4e-31 138.3 104 63.5
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 5.8e-31 137.5 104 63.5
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 5.8e-31 137.5 104 64.4
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 1.3e-30 136.3 105 64.8
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 1.3e-30 136.3 104 63.5
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 1.7e-30 136.0 104 60.6
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 6.5e-30 134.0 104 62.5
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 8.4e-30 133.7 104 59.6
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 8.4e-30 133.7 104 56.7
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.5e-29 132.1 104 65.4
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 4.2e-29 131.3 105 60.0
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 9.3e-29 130.2 104 54.8
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 3.5e-28 128.3 104 54.8
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 4.6e-28 127.9 104 59.6
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.0e-27 126.7 104 57.7
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 1.0e-27 126.7 104 56.7
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 1.3e-27 126.3 104 61.5
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.3e-27 125.6 109 56.9
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 3.0e-27 125.2 105 55.2
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 3.0e-27 125.2 104 59.6
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 8.7e-27 123.6 106 59.4
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 1.9e-26 122.5 105 58.1
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 2.5e-26 122.1 104 57.7
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.5e-26 122.1 104 57.7
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.5e-26 122.1 104 57.7
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.5e-26 122.1 104 58.7
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 4.3e-26 121.3 109 55.0
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.3e-26 121.3 104 57.7
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 4.3e-26 121.3 105 51.4
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 5.7e-26 120.9 104 52.9
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 5.7e-26 120.9 107 55.1
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.7e-26 120.9 104 56.7
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 7.4e-26 120.6 105 56.2
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 9.6e-26 120.2 104 55.8
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 4.8e-25 117.9 104 60.6
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 8.2e-25 117.1 105 56.2
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.4e-24 116.3 106 57.5
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.4e-24 116.3 106 57.5
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.4e-24 116.3 106 57.5
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 4.1e-24 114.8 110 52.7
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 2.6e-23 112.1 104 52.9
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 2.6e-23 112.1 75 72.0
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 5.8e-23 110.9 105 53.3
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 5.8e-23 110.9 104 54.8
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.2e-22 109.0 104 51.9
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.2e-22 109.0 104 51.9
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 6.5e-22 107.5 104 54.8
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 6.5e-22 107.5 105 47.6
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 1.9e-21 105.9 103 50.5
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 4.2e-21 104.8 112 50.9
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 9.3e-21 103.6 111 46.8
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 1.6e-20 102.8 106 47.2
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 2.1e-20 102.4 111 46.8
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 2.1e-20 102.4 111 46.8
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.1e-20 102.4 104 50.0
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 2.7e-20 102.1 111 46.8
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 3.5e-20 101.7 111 45.9
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 4.6e-20 101.3 111 46.8
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 7.9e-20 100.5 111 45.9
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.0e-19 100.1 112 50.0
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.0e-19 100.1 109 45.9
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.3e-19 99.8 111 45.9
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 1.3e-19 99.8 104 48.1
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 2.3e-19 99.0 106 50.0
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 3.0e-19 98.6 104 46.2
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 3.9e-19 98.2 111 45.0
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 5.7e-18 94.4 104 49.0
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 1.3e-17 93.2 104 43.3
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.3e-17 93.2 104 45.2
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.6e-17 92.8 107 41.1
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 1.6e-17 92.8 88 50.0
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 1.6e-17 92.8 104 46.2
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 2.2e-17 92.4 104 51.0
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.7e-17 91.7 111 44.1
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 8.2e-17 90.5 88 48.9
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 1.1e-16 90.1 105 43.8
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.4e-16 89.7 107 41.1
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.4e-16 89.7 111 40.5
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.4e-16 89.0 110 38.2
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 4.1e-16 88.2 107 40.2
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 5.3e-16 87.8 109 40.4
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 6.9e-16 87.4 104 43.3
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 4.5e-15 84.7 104 38.5
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 5.9e-15 84.3 105 42.9
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.0e-14 83.6 106 41.5
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 5.0e-14 81.3 104 37.5
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 5.0e-14 81.3 104 42.3
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 5.0e-14 81.3 104 43.3
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 6.5e-14 80.9 104 37.5
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 6.5e-14 80.9 104 37.5
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 6.5e-14 80.9 104 37.5
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.1e-13 80.1 108 39.8
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 1.4e-13 79.7 98 39.8
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.4e-13 79.7 104 38.5
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 9.4e-13 77.0 117 42.7
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.2e-12 76.6 110 37.3
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 2.1e-12 75.9 103 41.7
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 2.7e-12 75.5 114 39.5
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 2.7e-12 75.5 108 45.4
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 2.7e-12 75.5 104 44.2
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 1.8e-11 72.8 105 34.3
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 3.9e-11 71.6 106 39.6
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 3.9e-11 71.6 104 37.5
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 2.5e-10 68.9 83 41.0
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 4.8e-09 64.7 50 58.0
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 4.1e-08 61.6 94 37.2
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 5.3e-08 61.2 113 32.7
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 6.9e-08 60.8 87 39.1
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.5e-07 59.7 94 37.2
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.6e-07 58.9 42 59.5
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 7.7e-07 57.4 107 32.7
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.0e-06 57.0 88 37.5
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 3.8e-06 55.1 88 37.5
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 3.8e-06 55.1 104 30.8


User provided reference genes

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