Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 0.0e+00 1156.0 641 100.0
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.4e-230 802.0 645 69.3
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 2.3e-226 789.3 564 73.8
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 2.8e-224 782.3 580 74.3
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 2.2e-213 746.1 598 66.4
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.8e-186 656.8 550 61.8
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 9.7e-185 651.0 567 63.8
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 2.7e-179 632.9 560 62.5
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 2.6e-174 616.3 535 58.9
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 9.7e-169 597.8 561 58.3
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 2.2e-168 596.7 567 56.3
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 3.1e-167 592.8 531 57.3
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 4.1e-167 592.4 521 57.4
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 7.0e-167 591.7 555 58.6
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 7.0e-167 591.7 549 56.5
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.2e-166 590.9 568 58.1
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 2.9e-165 586.3 547 59.6
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 5.0e-165 585.5 547 59.8
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 5.7e-161 572.0 554 57.2
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.8e-160 569.7 575 55.7
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.8e-160 568.9 554 56.9
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.8e-159 567.0 551 53.9
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 9.1e-159 564.7 517 54.4
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 1.6e-158 563.9 537 56.2
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.5e-158 562.4 547 53.6
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.7e-157 560.5 553 56.1
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 9.4e-156 554.7 551 54.1
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 4.7e-155 552.4 553 54.6
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.8e-154 550.4 556 50.9
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 9.1e-151 538.1 554 54.5
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 5.0e-149 532.3 541 56.7
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 7.2e-148 528.5 523 51.1
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 8.9e-146 521.5 530 54.7
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 1.2e-145 521.2 639 46.0
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.5e-145 520.8 546 53.3
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 7.5e-145 518.5 542 50.0
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 9.8e-145 518.1 516 51.4
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.2e-144 516.9 556 50.0
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.1e-143 514.6 556 49.8
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.4e-143 513.5 556 50.0
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.4e-143 513.5 553 49.9
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 2.4e-143 513.5 555 52.8
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.7e-141 507.3 539 51.2
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 5.6e-140 502.3 528 52.8
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 7.3e-140 501.9 591 49.4
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 4.0e-138 496.1 467 57.2
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 3.4e-137 493.0 533 52.0
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.4e-137 492.7 553 51.2
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 9.8e-137 491.5 554 51.8
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.7e-136 490.7 558 51.8
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 1.1e-135 488.0 573 50.8
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.7e-134 483.4 558 52.3
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 3.0e-133 479.9 524 53.1
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 3.0e-133 479.9 553 47.6
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.1e-132 478.0 544 49.6
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.1e-132 478.0 548 50.4
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 7.3e-132 475.3 548 49.8
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.4e-130 471.1 562 50.4
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 6.8e-130 468.8 557 47.2
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.4e-129 466.5 559 50.3
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.4e-129 466.5 555 47.6
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 3.4e-129 466.5 565 48.8
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 2.1e-126 457.2 543 46.4
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.7e-125 454.1 531 48.6
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 2.3e-125 453.8 583 44.8
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.3e-124 449.9 550 48.2
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 3.3e-124 449.9 555 48.1
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.6e-123 447.6 568 48.9
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 2.1e-123 447.2 397 65.0
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 4.7e-123 446.0 397 58.4
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.1e-122 444.9 562 48.0
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 1.2e-121 441.4 520 49.0
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 4.4e-121 439.5 522 48.1
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 8.3e-120 435.3 520 48.7
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 5.4e-119 432.6 567 41.4
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.5e-116 424.5 561 47.8
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 7.3e-116 422.2 503 46.7
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 2.1e-115 420.6 564 46.8
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 8.1e-115 418.7 489 46.8
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 4.4e-113 412.9 410 54.4
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 7.8e-110 402.1 496 46.0
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.7e-109 401.0 350 57.7
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 3.0e-109 400.2 562 45.4
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 7.3e-108 395.6 573 45.9
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 1.5e-105 387.9 394 57.1
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 9.9e-105 385.2 358 64.0
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 6.4e-104 382.5 532 41.5
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 1.6e-102 377.9 469 51.2
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.9e-100 370.9 339 54.6
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 3.6e-99 366.7 537 38.5
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 6.9e-98 362.5 467 46.9
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.2e-96 357.5 238 72.7
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.5e-89 333.2 531 38.4
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.4e-87 328.2 248 66.5
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 2.5e-87 327.4 511 38.6
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 3.1e-82 310.5 536 34.5
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 5.8e-81 306.2 510 37.5
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.4e-79 301.6 360 46.1
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 7.4e-76 289.3 314 50.3
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 5.5e-71 273.1 601 31.6
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 7.2e-71 272.7 260 53.8
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 7.9e-70 269.2 312 46.8
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 5.9e-65 253.1 355 42.0
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 4.7e-62 243.4 668 29.9
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 3.2e-47 194.1 155 61.9
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 2.8e-43 181.0 312 43.9
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 2.5e-39 167.9 274 39.1
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 2.6e-36 157.9 179 46.9
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.7e-35 155.2 179 52.0
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 1.7e-35 155.2 116 61.2
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 8.3e-35 152.9 124 56.5
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.4e-34 152.1 117 59.8
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 5.4e-34 150.2 89 69.7
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 9.1e-34 149.4 122 56.6
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 7.7e-33 146.4 123 55.3
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.2e-30 139.0 108 57.4
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 1.6e-30 138.7 86 65.1
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.8e-29 135.2 107 56.1
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.5e-28 132.1 94 60.6
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 4.4e-28 130.6 148 48.0
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 4.9e-27 127.1 100 58.0
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.6e-25 122.1 82 62.2
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 5.9e-25 120.2 100 51.0
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 2.5e-23 114.8 84 59.5
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 8.0e-22 109.8 79 67.1
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.4e-21 109.0 80 53.8
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.8e-21 108.6 412 28.4
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 4.0e-21 107.5 88 58.0
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 8.9e-21 106.3 79 65.8
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 1.9e-18 98.6 138 40.6
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.2e-17 95.9 116 40.5
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.5e-17 94.4 125 36.0
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 5.0e-16 90.5 54 64.8
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 5.0e-16 90.5 87 48.3
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 1.1e-13 82.8 65 55.4
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 8.9e-13 79.7 82 43.9
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-12 79.3 69 49.3
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.6e-12 78.2 77 46.8
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.4e-12 77.8 70 48.6
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 7.5e-12 76.6 80 46.2
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.8e-12 76.3 76 46.1
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.8e-12 76.3 76 46.1
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.4e-10 72.4 61 49.2
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.5e-09 67.8 106 33.0
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 7.8e-09 66.6 47 61.7
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.3e-08 65.9 46 54.3
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.7e-08 65.5 205 26.8
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 1.5e-07 62.4 38 73.7
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.9e-07 62.0 61 47.5
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 7.3e-07 60.1 63 55.6
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 2.1e-06 58.5 35 62.9
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 2.1e-06 58.5 53 56.6
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 2.8e-06 58.2 50 54.0


User provided reference genes

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