Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046398 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D030951 8.0e-61 236.9 117 100.0
CSS0005977 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 1.1e-46 189.9 128 75.0
CSS0020466 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 1.1e-46 189.9 128 75.0
Dinv11203 Davidia involucrata HOM05D004105 ORTHO05D005649 1.4e-44 183.0 128 71.9
Actinidia36827 Actinidia chinensis HOM05D004105 ORTHO05D030951 4.0e-44 181.4 128 70.3
Rhsim12G0177900 Rhododendron simsii HOM05D004105 ORTHO05D005649 4.0e-44 181.4 128 71.9
FvH4_5g08950 Fragaria vesca HOM05D004105 ORTHO05D005649 5.2e-44 181.0 128 70.3
FAN04G0399 Fragaria x ananassa HOM05D004105 ORTHO05D005649 5.2e-44 181.0 128 70.3
FAN08G1339 Fragaria x ananassa HOM05D004105 ORTHO05D005649 5.2e-44 181.0 128 70.3
FAN18G1589 Fragaria x ananassa HOM05D004105 ORTHO05D005649 5.2e-44 181.0 128 70.3
MD06G1136900 Malus domestica HOM05D004105 ORTHO05D005649 5.2e-44 181.0 128 70.3
Nn4g22230 Nelumbo nucifera HOM05D004105 ORTHO05D005649 5.2e-44 181.0 128 70.3
FAN13G0496 Fragaria x ananassa HOM05D004105 ORTHO05D005649 6.8e-44 180.6 128 69.5
RcHm_v2.0_Chr7g0189421 Rosa chinensis HOM05D004105 ORTHO05D005649 6.8e-44 180.6 128 70.3
Actinidia08890 Actinidia chinensis HOM05D004105 ORTHO05D005649 8.8e-44 180.3 128 69.5
Lj9C482T3 Lonicera japonica HOM05D004105 ORTHO05D005649 8.8e-44 180.3 128 68.8
Cc10_g12640 Coffea canephora HOM05D004105 ORTHO05D005649 1.2e-43 179.9 128 69.5
Prupe.5G146800 Prunus persica HOM05D004105 ORTHO05D005649 1.2e-43 179.9 128 71.1
Rhsim08G0193500 Rhododendron simsii HOM05D004105 ORTHO05D005649 1.2e-43 179.9 128 69.5
TWI39G0681 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 1.2e-43 179.9 128 70.3
Oeu036699.1 Olea europaea HOM05D004105 ORTHO05D005649 1.5e-43 179.5 128 68.0
Actinidia18331 Actinidia chinensis HOM05D004105 ORTHO05D005649 2.6e-43 178.7 128 69.5
Manes.06G122800 Manihot esculenta HOM05D004105 ORTHO05D005649 3.4e-43 178.3 128 69.5
DCAR_021646 Daucus carota HOM05D004105 ORTHO05D005649 4.4e-43 177.9 128 69.5
MD14G1151700 Malus domestica HOM05D004105 ORTHO05D005649 4.4e-43 177.9 128 68.8
Ciclev10031414m.g Citrus clementina HOM05D004105 ORTHO05D005649 5.7e-43 177.6 128 68.0
Hma1.2p1_0572F.1_g181070 Hydrangea macrophylla HOM05D004105 ORTHO05D005649 5.7e-43 177.6 128 70.3
QL11p026924 Quercus lobata HOM05D004105 ORTHO05D005649 5.7e-43 177.6 128 69.5
Potri.015G101100 Populus trichocarpa HOM05D004105 ORTHO05D005649 7.5e-43 177.2 128 68.0
EL10Ac5g11355 Beta vulgaris HOM05D004105 ORTHO05D005649 9.8e-43 176.8 128 68.8
CsaV3_7G007260 Cucumis sativus L. HOM05D004105 ORTHO05D005649 9.8e-43 176.8 128 68.0
Eucgr.K00727 Eucalyptus grandis HOM05D004105 ORTHO05D005649 9.8e-43 176.8 128 68.0
CiPaw.11G003700 Carya illinoinensis HOM05D004105 ORTHO05D005649 1.3e-42 176.4 128 67.2
ECA247G3132 Erigeron canadensis HOM05D004105 ORTHO05D005649 1.3e-42 176.4 128 68.0
ClCG09G016340 Citrullus lanatus HOM05D004105 ORTHO05D005649 1.7e-42 176.0 128 68.0
Thecc.03G135100 Theobroma cacao HOM05D004105 ORTHO05D005649 1.7e-42 176.0 128 68.0
TWI23G0168 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 1.7e-42 176.0 128 68.8
CDE05G1664 Ceratophyllum demersum HOM05D004105 ORTHO05D005649 2.8e-42 175.3 128 67.2
Sabra15G0121600 Salix brachista HOM05D004105 ORTHO05D005649 2.8e-42 175.3 128 67.2
Sed0023678 Sechium edule HOM05D004105 ORTHO05D005649 3.7e-42 174.9 128 67.2
unitig_32.g11186 Utricularia gibba HOM05D004105 ORTHO05D005649 3.7e-42 174.9 128 66.4
vmacro16732 Vaccinium macrocarpon HOM05D004105 ORTHO05D005649 3.7e-42 174.9 128 68.0
Dinv23185 Davidia involucrata HOM05D005705 ORTHO05D007152 4.8e-42 174.5 128 68.8
TAR371G1205 Trochodendron aralioides HOM05D004105 ORTHO05D005649 4.8e-42 174.5 128 68.8
AUR62034822 Chenopodium quinoa HOM05D004105 ORTHO05D005649 6.3e-42 174.1 128 67.2
HanXRQChr09g0273511 Helianthus annuus HOM05D004105 ORTHO05D005649 6.3e-42 174.1 128 67.2
Manes.14G048100 Manihot esculenta HOM05D004105 ORTHO05D005649 6.3e-42 174.1 128 67.2
Migut.E00706 Erythranthe guttata HOM05D004105 ORTHO05D005649 8.3e-42 173.7 128 67.2
Cfa018749 Carpinus fangiana HOM05D004105 ORTHO05D005649 1.1e-41 173.3 128 67.2
Gohir.A07G048500 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.1e-41 173.3 128 67.2
Gohir.D07G052800 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.1e-41 173.3 128 67.2
Gorai.001G055800 Gossypium raimondii HOM05D004105 ORTHO05D005649 1.1e-41 173.3 128 67.2
Peaxi162Scf00334g00121 Petunia axillaris HOM05D004105 ORTHO05D005649 1.1e-41 173.3 128 67.2
TPR.G38501 Trifolium pratense HOM05D004105 ORTHO05D005649 1.1e-41 173.3 127 68.5
AUR62029560 Chenopodium quinoa HOM05D004105 ORTHO05D005649 1.4e-41 172.9 128 66.4
Haze_07185 Corylus avellana HOM05D004105 ORTHO05D005649 1.8e-41 172.6 128 67.2
MELO3C018572.2 Cucumis melo HOM05D004105 ORTHO05D005649 1.8e-41 172.6 128 66.4
Phvul.009G118500 Phaseolus vulgaris HOM05D004105 ORTHO05D005649 1.8e-41 172.6 128 65.6
Atru.chr6.1872 Acer truncatum HOM05D004105 ORTHO05D005649 2.4e-41 172.2 128 68.0
VMungo1309G1206 Vigna mungo HOM05D004105 ORTHO05D005649 2.4e-41 172.2 128 66.4
PSO017G4116 Papaver somniferum HOM05D004105 ORTHO05D005649 3.1e-41 171.8 128 67.2
PSO478G2355 Papaver somniferum HOM05D004105 ORTHO05D005649 3.1e-41 171.8 128 67.2
MSTRG.13687 Avicennia marina HOM05D004105 ORTHO05D005649 4.1e-41 171.4 127 66.1
ATR0582G244 Amborella trichopoda HOM05D004105 ORTHO05D005649 5.4e-41 171.0 128 64.8
HanXRQChr02g0034141 Helianthus annuus HOM05D004105 ORTHO05D005649 5.4e-41 171.0 128 67.2
MBI04_g30438_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 5.4e-41 171.0 128 65.6
A09p08350 Brassica napus HOM05D004105 ORTHO05D005649 7.0e-41 170.6 128 66.4
BraA09t36484Z Brassica rapa HOM05D004105 ORTHO05D005649 7.0e-41 170.6 128 66.4
Duzib205G0778 Durio zibethinus HOM05D004105 ORTHO05D005649 9.1e-41 170.2 128 66.4
MBI11_g13058_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 1.2e-40 169.9 128 66.4
Duzib068G0759 Durio zibethinus HOM05D004105 ORTHO05D005649 1.6e-40 169.5 128 65.6
Thhalv10010337m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 1.6e-40 169.5 128 64.8
PGR083G1562 Punica granatum HOM05D004105 ORTHO05D005649 1.6e-40 169.5 128 66.4
Sp5g13290 Schrenkiella parvula HOM05D004105 ORTHO05D005649 1.6e-40 169.5 128 64.8
BcaC04g23339 Brassica carinata HOM05D004105 ORTHO05D005649 2.0e-40 169.1 128 64.8
A06p30190 Brassica napus HOM05D004105 ORTHO05D005649 2.0e-40 169.1 128 65.6
C09p09420 Brassica napus HOM05D004105 ORTHO05D005649 2.0e-40 169.1 128 64.8
BolC9t53854H Brassica oleracea HOM05D004105 ORTHO05D005649 2.0e-40 169.1 128 64.8
BraA06t25970Z Brassica rapa HOM05D004105 ORTHO05D005649 2.0e-40 169.1 128 65.6
AL8G40650 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 2.7e-40 168.7 128 65.6
Cpa.g.sc4.152 Carica papaya HOM05D004105 ORTHO05D005649 2.7e-40 168.7 128 65.6
Medtr3g118070 Medicago truncatula HOM05D004105 ORTHO05D005649 2.7e-40 168.7 127 66.9
Peaxi162Scf00681g00117 Petunia axillaris HOM05D004105 ORTHO05D005649 2.7e-40 168.7 128 65.6
Psat5g001920 Pisum sativum HOM05D004105 ORTHO05D005649 2.7e-40 168.7 127 66.1
Sc04g0000430 Simmondsia chinensis HOM05D004105 ORTHO05D005649 2.7e-40 168.7 128 65.6
Thhalv10004138m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 3.5e-40 168.3 128 64.8
AL5G28210 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 4.5e-40 167.9 128 64.8
AT3G48730 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 4.5e-40 167.9 128 64.8
BcaB04g19926 Brassica carinata HOM05D004105 ORTHO05D005649 4.5e-40 167.9 128 64.8
Carub.0005s1489 Capsella rubella HOM05D004105 ORTHO05D005649 4.5e-40 167.9 128 64.8
CARHR277440 Cardamine hirsuta HOM05D004105 ORTHO05D005649 4.5e-40 167.9 128 64.8
Duzib084G0440 Durio zibethinus HOM05D004105 ORTHO05D005649 4.5e-40 167.9 128 64.8
BcaB02g09750 Brassica carinata HOM05D004105 ORTHO05D005649 5.9e-40 167.5 128 64.8
BcaC01g02611 Brassica carinata HOM05D004105 ORTHO05D005649 5.9e-40 167.5 128 64.8
C03p62870 Brassica napus HOM05D004105 ORTHO05D005649 5.9e-40 167.5 128 64.8
BolC3t18541H Brassica oleracea HOM05D004105 ORTHO05D005649 5.9e-40 167.5 128 64.8
Ca_15293_v3 Cicer arietinum L. HOM05D004105 ORTHO05D005649 5.9e-40 167.5 127 66.1
Lsat_1_v5_gn_1_32701 Lactuca sativa HOM05D004105 ORTHO05D005649 5.9e-40 167.5 128 65.6
Sp2g26660 Schrenkiella parvula HOM05D004105 ORTHO05D005649 5.9e-40 167.5 128 64.8
Aqoxy3G01668 Aquilegia oxysepala HOM05D004105 ORTHO05D005649 7.7e-40 167.2 128 66.4
AT5G63570 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 7.7e-40 167.2 128 64.1
Hund02468 Selenicereus undatus HOM05D004105 ORTHO05D005649 7.7e-40 167.2 128 64.8
Zm00001eb291360 Zea mays HOM05D004105 ORTHO05D005649 7.7e-40 167.2 128 64.8
Glyma.06G002900 Glycine max HOM05D004105 ORTHO05D005649 1.3e-39 166.4 127 64.6
Solyc04g009200.3 Solanum lycopersicum HOM05D004105 ORTHO05D005649 1.3e-39 166.4 128 64.1
Sopen04g004330 Solanum pennellii HOM05D004105 ORTHO05D005649 1.3e-39 166.4 128 64.1
PGSC0003DMG400032546 Solanum tuberosum HOM05D004105 ORTHO05D005649 1.3e-39 166.4 128 64.8
Lalb_Chr08g0246741 Lupinus albus HOM05D004105 ORTHO05D005649 2.3e-39 165.6 128 64.8
arahy.Tifrunner.gnm1.ann1.26LP8U Arachis hypogaea HOM05D004105 ORTHO05D005649 2.9e-39 165.2 128 64.1
arahy.Tifrunner.gnm1.ann1.NV4Y6S Arachis hypogaea HOM05D004105 ORTHO05D005649 2.9e-39 165.2 128 64.1
Glyma.04G002900 Glycine max HOM05D004105 ORTHO05D005649 2.9e-39 165.2 127 64.6
Gohir.A03G053920 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.9e-39 165.2 128 64.1
Gohir.D03G112900 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.9e-39 165.2 128 64.1
Gohir.D03G112950 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.9e-39 165.2 128 64.1
SGA_v2.0_scaffold99G29471 Striga asiatica HOM05D004105 ORTHO05D005649 2.9e-39 165.2 128 62.5
Aa31LG1G18370 Aethionema arabicum HOM05D004105 ORTHO05D005649 3.8e-39 164.9 127 64.6
SMO337G0012 Selaginella moellendorffii HOM05D004105 ORTHO05D005649 3.8e-39 164.9 127 63.0
TAR622G0102 Trochodendron aralioides HOM05D004105 ORTHO05D005649 3.8e-39 164.9 128 65.6
Gohir.A03G054100 Gossypium hirsutum HOM05D004105 ORTHO05D005649 5.0e-39 164.5 128 64.1
ECA232G0449 Erigeron canadensis HOM05D004105 ORTHO05D005649 6.6e-39 164.1 128 61.7
THA.LOC104818177 Tarenaya hassleriana HOM05D004105 ORTHO05D005649 6.6e-39 164.1 128 63.3
Carub.0008s2430 Capsella rubella HOM05D004105 ORTHO05D005649 8.6e-39 163.7 128 63.3
Gorai.003G119100 Gossypium raimondii HOM05D004105 ORTHO05D005649 8.6e-39 163.7 128 63.3
CAN.G619.6 Capsicum annuum HOM05D004105 ORTHO05D005649 1.1e-38 163.3 128 64.1
Os08g0532200 Oryza sativa ssp. japonica HOM05D004105 ORTHO05D005649 1.5e-38 162.9 128 61.7
Haze_07186 Corylus avellana HOM05D004105 ORTHO05D005649 1.9e-38 162.5 128 63.3
Lj1g0022155 Lotus japonicus HOM05D004105 ORTHO05D005649 4.2e-38 161.4 128 62.5
Pp3c16_12390 Physcomitrium patens HOM05D004105 ORTHO05D005649 6.1e-37 157.5 127 63.0
HPP92_000338 Vanilla planifolia HOM05D004105 ORTHO05D005649 6.1e-37 157.5 128 60.9
AagrBONN_evm.TU.Sc2ySwM_368.3191 Anthoceros agrestis HOM05D004105 ORTHO05D005649 1.0e-36 156.8 128 61.7
Pp3c27_4150 Physcomitrium patens HOM05D004105 ORTHO05D005649 1.4e-36 156.4 128 60.2
arahy.Tifrunner.gnm1.ann1.M8Q52W Arachis hypogaea HOM05D004105 ORTHO05D005649 4.0e-36 154.8 128 60.2
SEGI_17449 Sequoiadendron giganteum HOM05D004105 ORTHO05D005649 8.9e-36 153.7 127 59.1
SHI10683 Sapria himalayana HOM05D004105 ORTHO05D005649 3.4e-35 151.8 127 60.6
AUR62005532 Chenopodium quinoa HOM05D004105 ORTHO05D005649 5.7e-35 151.0 116 64.7
CBR_g49915 Chara braunii HOM05D004105 ORTHO05D005649 2.2e-34 149.1 127 56.7
Mapoly0094s0038 Marchantia polymorpha HOM05D004105 ORTHO05D005649 3.7e-34 148.3 127 59.8
MCO04G178 Micromonas commoda HOM05D004105 ORTHO05D005649 3.5e-32 141.7 127 57.5
Cre03.g158000 Chlamydomonas reinhardtii HOM05D004105 ORTHO05D005649 1.7e-31 139.4 127 58.3
Nitab4.5_0011777g0030 Nicotiana tabacum HOM05D004105 ORTHO05D005649 5.6e-30 134.4 111 61.3
PRCOL_00001317 Prasinoderma coloniale HOM05D004105 ORTHO05D005649 1.5e-27 126.3 126 53.2
CDE02G1094 Ceratophyllum demersum HOM05D004105 ORTHO05D030951 2.6e-27 125.6 130 53.8
Nitab4.5_0001089g0010 Nicotiana tabacum HOM05D004105 ORTHO05D005649 3.4e-27 125.2 104 61.5
RcHm_v2.0_Chr7g0199591 Rosa chinensis HOM05D004105 ORTHO05D005649 1.7e-26 122.9 116 56.0
Nitab4.5_0002672g0010 Nicotiana tabacum HOM05D004105 ORTHO05D029789 4.9e-26 121.3 99 61.6
Potri.012G103000 Populus trichocarpa HOM05D004105 ORTHO05D005649 7.0e-25 117.5 128 50.8
GSVIVG01008589001 Vitis vinifera HOM05D004105 ORTHO05D005649 6.2e-21 104.4 89 60.7
QL11p026963 Quercus lobata HOM05D004105 ORTHO05D005649 8.0e-21 104.0 116 49.1
MBI04_g30114_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 4.9e-18 94.7 80 60.0
TAR629G2294 Trochodendron aralioides HOM05D004105 ORTHO05D005649 6.0e-16 87.8 91 53.8
CSS0032985 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D112895 7.3e-14 80.9 75 65.3


User provided reference genes

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