Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 0.0e+00 1825.8 902 100.0
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 0.0e+00 1287.3 1050 63.7
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1224.9 963 66.1
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1209.5 971 64.1
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1199.1 971 65.1
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1170.2 962 62.5
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 0.0e+00 1167.1 1006 60.3
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 0.0e+00 1160.2 897 65.4
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 0.0e+00 1154.0 962 61.9
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1137.9 990 60.4
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 0.0e+00 1132.9 1004 60.6
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 0.0e+00 1122.1 924 61.8
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 0.0e+00 1120.1 949 61.3
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 0.0e+00 1111.7 962 60.1
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 0.0e+00 1107.8 1001 58.7
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1099.7 950 61.1
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 0.0e+00 1097.8 956 62.1
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 0.0e+00 1096.3 987 59.1
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 0.0e+00 1096.3 962 60.0
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 0.0e+00 1095.1 969 59.4
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1089.7 953 60.5
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 0.0e+00 1089.3 966 59.7
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 0.0e+00 1088.2 959 59.9
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 0.0e+00 1085.5 745 71.7
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 0.0e+00 1081.2 973 58.7
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1078.5 987 58.6
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1077.8 963 59.3
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 0.0e+00 1075.8 930 60.3
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1075.5 955 59.9
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 2.5e-311 1072.0 1041 56.3
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 5.6e-311 1070.8 960 58.5
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 8.8e-309 1063.5 956 57.9
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 1.1e-308 1063.1 956 58.2
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.8e-306 1055.8 951 58.6
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 5.3e-306 1054.3 995 56.4
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 2.1e-302 1042.3 974 56.3
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 8.8e-301 1036.9 987 55.4
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.7e-299 1032.7 965 57.1
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 2.2e-299 1032.3 988 55.8
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 4.1e-298 1028.1 976 56.1
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 5.4e-298 1027.7 991 56.8
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 5.4e-298 1027.7 1011 55.0
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.6e-297 1026.2 1011 55.2
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.6e-294 1016.1 973 55.5
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 3.6e-294 1015.0 962 56.1
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.5e-292 1009.6 965 55.3
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.6e-292 1008.8 998 55.0
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 7.0e-290 1000.7 970 55.8
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 5.9e-289 997.7 945 57.8
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 3.8e-288 995.0 953 55.8
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 2.5e-287 992.3 894 58.7
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 1.8e-285 986.1 953 55.3
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 2.4e-282 975.7 919 56.4
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.6e-281 973.0 752 64.4
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 4.6e-281 971.5 886 57.3
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.7e-280 969.5 984 53.7
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 6.6e-280 967.6 962 55.2
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.0e-277 960.3 971 54.9
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 2.6e-276 955.7 866 57.9
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 4.4e-276 954.9 951 54.9
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 7.5e-276 954.1 916 56.6
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 1.7e-275 953.0 979 51.7
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.1e-274 950.3 959 54.8
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 4.0e-269 931.8 961 54.1
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 9.8e-268 927.2 941 55.0
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.3e-264 916.8 995 51.9
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 5.6e-263 911.4 815 60.2
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 7.3e-263 911.0 988 52.7
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 2.3e-261 906.0 947 52.6
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 5.8e-260 901.4 954 52.6
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 9.2e-258 894.0 951 52.5
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 8.6e-256 887.5 957 51.6
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 4.3e-255 885.2 896 53.7
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 7.3e-255 884.4 681 64.5
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 7.3e-255 884.4 981 50.6
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 6.2e-254 881.3 985 48.2
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.3e-251 873.6 962 49.3
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.9e-251 872.5 924 50.5
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 4.2e-250 868.6 962 51.0
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 7.1e-250 867.8 978 50.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 2.1e-249 866.3 962 50.9
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 3.5e-249 865.5 962 51.2
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.8e-245 853.2 1003 48.9
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 2.0e-244 849.7 966 47.9
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.4e-234 816.2 529 75.8
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.0e-219 767.7 566 65.9
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 5.5e-218 761.9 664 59.6
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 7.2e-218 761.5 553 66.9
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 9.7e-215 751.1 737 55.9
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 1.9e-210 736.9 728 54.0
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 1.9e-210 736.9 739 56.6
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 3.0e-208 729.6 461 76.1
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.2e-203 713.4 943 44.6
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 8.8e-192 674.9 806 49.3
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 5.3e-189 665.6 479 71.2
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.7e-185 652.5 926 42.8
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 2.3e-184 650.2 1147 35.8
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 5.0e-179 632.5 1030 38.6
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 5.5e-178 629.0 969 41.1
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 1.0e-171 608.2 800 41.5
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.5e-162 577.0 601 51.1
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-161 574.3 683 46.7
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-158 564.7 703 45.1
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 2.2e-158 563.9 479 62.6
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-151 541.2 703 44.2
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.2e-143 515.0 448 60.7
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.2e-143 515.0 448 60.7
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.6e-143 512.3 924 36.9
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 7.3e-138 495.7 278 84.2
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 1.1e-136 491.9 313 74.1
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.2e-133 480.3 475 51.2
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.4e-125 453.0 725 40.1
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.1e-117 428.7 442 54.1
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.1e-117 426.0 620 42.3
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.5e-116 423.7 297 75.4
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 7.6e-111 406.0 363 57.3
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 6.7e-107 392.9 582 43.6
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.3e-98 363.6 726 33.6
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.1e-96 355.9 716 35.1
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 2.3e-91 341.3 387 51.2
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.6e-90 337.8 573 38.7
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.4e-85 322.0 169 94.7
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 5.5e-85 320.1 479 41.5
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 3.7e-81 307.4 400 42.5
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 4.2e-77 293.9 164 79.9
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 4.1e-72 277.3 408 43.6
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 1.2e-66 259.2 270 49.3
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 2.0e-66 258.5 343 41.7
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 4.4e-66 257.3 141 82.3
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.9e-63 246.9 474 36.3
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.5e-58 232.3 377 39.0
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-53 215.3 191 52.4
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.2e-49 201.8 164 64.0
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.4e-48 198.4 126 84.1
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 9.2e-48 196.4 109 83.5
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-45 188.7 159 53.5
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.8e-44 184.9 542 29.0
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 9.8e-42 176.4 106 76.4
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 2.7e-39 168.3 258 43.4
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.8e-39 166.8 636 26.4
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.0e-38 166.4 327 32.1
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 4.3e-37 161.0 379 30.9
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 4.7e-36 157.5 170 52.4
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 2.7e-31 141.7 120 62.5
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.3e-30 139.4 83 86.7
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.6e-28 132.5 250 32.4
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 6.2e-28 130.6 89 67.4
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 2.0e-26 125.6 86 67.4
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 4.4e-26 124.4 84 70.2
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 1.6e-23 115.9 109 55.0
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 2.1e-23 115.5 84 66.7
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 2.5e-13 82.0 100 47.0
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 3.3e-13 81.6 58 65.5
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 4.8e-12 77.8 77 48.1
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.3e-08 63.5 71 45.1
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 3.5e-07 61.6 96 39.6
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 3.5e-07 61.6 125 35.2


User provided reference genes

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