Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 4.1e-254 880.9 452 100.0
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 1.4e-198 696.4 381 89.2
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 5.6e-187 657.9 381 85.3
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 2.3e-172 609.4 384 76.3
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 8.7e-172 607.4 384 76.0
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 7.6e-168 594.3 382 75.4
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 4.3e-163 578.6 382 72.8
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 3.6e-162 575.5 383 72.8
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 3.1e-161 572.4 385 74.0
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 1.4e-158 563.5 385 72.2
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 2.4e-158 562.8 384 72.1
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 2.4e-158 562.8 386 73.3
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 2.4e-158 562.8 381 72.2
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 4.2e-158 562.0 387 71.3
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 9.3e-158 560.8 380 73.2
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 9.3e-158 560.8 382 71.5
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 1.3e-156 557.0 380 72.9
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 8.7e-156 554.3 377 71.4
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 9.6e-155 550.8 381 71.1
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 3.7e-154 548.9 383 71.3
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 6.2e-154 548.1 379 71.5
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.8e-153 546.6 379 69.1
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 1.8e-153 546.6 378 70.9
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.8e-153 546.6 383 71.0
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 6.9e-153 544.7 381 69.6
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.4e-150 537.0 379 70.4
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 3.2e-150 535.8 381 69.0
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 4.2e-150 535.4 380 69.5
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 2.7e-149 532.7 381 68.5
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 4.6e-149 531.9 381 70.1
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 7.9e-149 531.2 385 68.8
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 1.0e-148 530.8 381 68.5
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 1.5e-147 526.9 384 68.0
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 2.5e-147 526.2 378 70.4
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 4.3e-147 525.4 376 69.4
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 2.1e-146 523.1 381 69.8
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 4.8e-146 521.9 380 68.4
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 4.8e-146 521.9 376 68.6
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 1.1e-145 520.8 382 67.3
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 1.4e-145 520.4 374 68.7
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 1.8e-145 520.0 384 67.4
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 5.3e-145 518.5 377 69.8
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 2.6e-144 516.2 374 70.3
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 2.6e-144 516.2 374 69.5
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 2.2e-143 513.1 374 66.8
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 2.2e-143 513.1 382 68.3
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 2.9e-143 512.7 389 66.1
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 2.9e-143 512.7 373 67.8
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 4.9e-143 511.9 384 67.4
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 1.4e-142 510.4 378 68.5
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 1.4e-142 510.4 382 67.5
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 3.2e-142 509.2 380 68.2
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 7.1e-142 508.1 384 66.4
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 1.2e-141 507.3 384 66.4
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 1.2e-141 507.3 387 66.1
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 1.2e-141 507.3 357 70.6
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 3.5e-141 505.8 381 65.6
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 1.8e-140 503.4 377 67.4
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 9.7e-139 497.7 415 62.4
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 1.6e-138 496.9 363 68.9
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 6.3e-138 495.0 381 65.9
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 1.8e-137 493.4 367 67.0
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 4.1e-137 492.3 390 65.1
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 9.0e-137 491.1 379 65.7
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 3.4e-136 489.2 377 65.3
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 5.0e-135 485.3 294 79.9
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 8.5e-135 484.6 384 64.8
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 1.4e-132 477.2 392 60.5
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.1e-129 467.6 374 62.0
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 1.8e-129 466.8 358 64.5
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 4.1e-129 465.7 379 62.5
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 5.3e-129 465.3 356 65.7
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 1.3e-127 460.7 326 72.7
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 5.0e-127 458.8 333 66.4
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 3.2e-126 456.1 343 67.1
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 3.9e-124 449.1 374 62.3
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 1.8e-121 440.3 358 63.1
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 1.7e-119 433.7 323 67.5
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 1.5e-110 404.1 306 64.7
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 3.3e-107 392.9 386 53.9
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 1.6e-104 384.0 292 65.1
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 4.5e-104 382.5 452 48.2
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 1.9e-102 377.1 464 45.5
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 1.4e-100 370.9 379 53.3
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 4.0e-100 369.4 283 66.1
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 3.4e-99 366.3 314 60.2
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 2.2e-98 363.6 341 55.4
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 5.4e-97 359.0 377 54.6
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 1.2e-83 314.7 538 38.3
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.2e-82 310.5 374 48.7
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 3.0e-79 300.1 283 58.7
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 5.0e-79 299.3 264 59.1
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 1.1e-78 298.1 280 56.4
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 1.9e-78 297.4 266 57.9
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 2.6e-75 287.0 242 59.9
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 7.0e-73 278.9 163 82.2
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 3.9e-71 273.1 217 63.1
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 6.6e-71 272.3 166 77.1
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 8.1e-69 265.4 423 39.5
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 4.0e-68 263.1 391 41.4
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 8.9e-68 261.9 292 50.7
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.4e-67 260.0 344 45.1
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 6.0e-64 249.2 257 54.9
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 2.5e-62 243.8 155 74.2
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 3.3e-54 216.9 406 39.4
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 2.1e-48 197.6 196 51.5
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 5.8e-43 179.5 124 72.6
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 4.9e-42 176.4 111 75.7
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 3.2e-41 173.7 401 31.4
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 2.0e-35 154.5 309 34.6
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 1.6e-32 144.8 82 78.0
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 6.7e-31 139.4 141 49.6
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 1.1e-30 138.7 174 41.4
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 2.8e-29 134.0 93 71.0
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.5e-27 128.3 80 77.5
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.5e-27 126.7 80 70.0
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.9e-25 121.3 80 73.8
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 6.7e-23 112.8 69 79.7
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 2.9e-18 97.4 52 80.8
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 5.5e-17 93.2 64 71.9
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.6e-16 91.7 54 70.4
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.6e-16 91.7 54 70.4
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 4.6e-16 90.1 49 79.6
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 3.3e-14 84.0 120 40.8
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.3e-13 82.0 50 68.0
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 6.5e-10 69.7 85 42.4
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 1.2e-08 65.5 73 50.7
MD08G1143600 Malus domestica HOM05D005914 ORTHO05D007361 1.2e-08 65.5 67 52.2
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.1e-08 64.7 43 74.4
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 1.8e-07 61.6 40 67.5
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 3.0e-07 60.8 28 92.9
MD08G1143500 Malus domestica HOM05D005914 ORTHO05D007361 1.1e-06 58.9 57 57.9


User provided reference genes

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