Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 5.3e-77 291.2 175 100.0
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 1.8e-53 213.0 176 79.0
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 7.0e-53 211.1 127 80.3
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 5.9e-52 208.0 127 79.5
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 7.7e-52 207.6 127 80.3
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 1.3e-51 206.8 178 62.4
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 3.8e-51 205.3 175 62.9
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 6.5e-51 204.5 125 77.6
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 1.1e-50 203.8 175 72.0
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 1.5e-50 203.4 126 80.2
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 2.5e-50 202.6 128 74.2
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 4.2e-50 201.8 127 78.7
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 7.2e-50 201.1 128 74.2
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 3.6e-49 198.7 125 74.4
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 4.7e-49 198.4 129 76.0
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 8.0e-49 197.6 124 74.2
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 2.3e-48 196.1 178 56.2
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 3.0e-48 195.7 174 56.3
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 4.0e-48 195.3 121 76.9
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 6.8e-48 194.5 127 74.8
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 6.8e-48 194.5 127 74.8
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 8.8e-48 194.1 128 71.1
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 8.8e-48 194.1 128 71.1
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 8.8e-48 194.1 128 73.4
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.2e-47 193.7 128 71.1
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 2.6e-47 192.6 123 74.8
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 3.4e-47 192.2 170 57.6
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 5.7e-47 191.4 144 69.4
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 5.7e-47 191.4 165 62.4
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 1.3e-46 190.3 130 70.8
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 1.7e-46 189.9 177 55.4
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.7e-46 189.9 123 75.6
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 2.2e-46 189.5 184 63.6
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 2.2e-46 189.5 180 56.1
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 4.9e-46 188.3 201 53.2
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 4.9e-46 188.3 123 72.4
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 6.3e-46 188.0 126 70.6
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 8.3e-46 187.6 174 60.9
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 1.1e-45 187.2 128 69.5
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 4.1e-45 185.3 130 68.5
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 9.1e-45 184.1 127 67.7
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 1.6e-44 183.3 124 71.8
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 2.7e-44 182.6 167 57.5
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 3.5e-44 182.2 128 66.4
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 1.7e-43 179.9 129 66.7
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 1.7e-43 179.9 129 66.7
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 6.6e-43 177.9 127 69.3
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 1.1e-42 177.2 121 66.1
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 1.5e-42 176.8 128 64.1
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 1.5e-42 176.8 121 69.4
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 1.9e-42 176.4 175 54.9
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 1.9e-42 176.4 127 69.3
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 1.9e-42 176.4 127 67.7
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 3.3e-42 175.6 176 54.0
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 4.2e-42 175.3 121 66.1
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 4.2e-42 175.3 129 68.2
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 4.2e-42 175.3 127 67.7
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 4.2e-42 175.3 131 66.4
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 7.2e-42 174.5 120 70.8
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 9.5e-42 174.1 127 66.9
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 1.2e-41 173.7 118 65.3
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 1.6e-41 173.3 119 65.5
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 1.6e-41 173.3 119 65.5
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 1.6e-41 173.3 118 66.9
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 2.1e-41 172.9 122 67.2
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 3.6e-41 172.2 123 68.3
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 4.7e-41 171.8 129 66.7
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 1.0e-40 170.6 176 52.8
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 2.3e-40 169.5 128 61.7
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 3.0e-40 169.1 120 65.0
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 4.0e-40 168.7 124 66.1
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 5.2e-40 168.3 127 62.2
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 1.2e-39 167.2 124 63.7
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 1.7e-38 163.3 124 62.9
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 1.7e-38 163.3 90 83.3
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 8.3e-38 161.0 91 82.4
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 1.1e-37 160.6 150 58.7
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 2.7e-36 156.0 100 75.0
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 5.9e-36 154.8 118 64.4
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 1.0e-35 154.1 125 57.6
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 6.6e-35 151.4 110 68.2
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 6.6e-35 151.4 103 67.0
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 4.3e-34 148.7 124 59.7
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 5.6e-34 148.3 118 62.7
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 2.1e-33 146.4 98 69.4
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 3.6e-33 145.6 96 69.8
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 1.5e-31 140.2 97 70.1
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 6.4e-30 134.8 97 63.9
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 7.8e-28 127.9 100 62.0
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 5.0e-27 125.2 71 80.3
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 1.1e-26 124.0 88 68.2
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 5.6e-26 121.7 62 90.3
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.8e-24 116.7 65 80.0
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 1.4e-21 107.1 60 78.3
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 1.9e-18 96.7 116 42.2
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 2.1e-17 93.2 48 89.6
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 6.2e-17 91.7 61 72.1
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 6.8e-16 88.2 128 38.3
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 7.6e-15 84.7 50 76.0
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 2.2e-14 83.2 122 44.3
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 4.1e-13 79.0 62 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.3e-11 73.9 75 50.7
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 1.8e-08 63.5 56 50.0
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 4.0e-08 62.4 88 37.5
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 1.5e-07 60.5 72 43.1
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 3.4e-07 59.3 74 43.2
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 5.8e-07 58.5 72 40.3
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 7.6e-07 58.2 72 41.7
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 9.9e-07 57.8 72 41.7
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 9.9e-07 57.8 64 43.8
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 9.9e-07 57.8 57 45.6
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 1.3e-06 57.4 72 40.3
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 1.3e-06 57.4 75 41.3
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 1.3e-06 57.4 57 45.6
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 1.3e-06 57.4 75 41.3
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 1.3e-06 57.4 78 39.7
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 1.7e-06 57.0 62 41.9
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 1.7e-06 57.0 77 41.6
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 1.7e-06 57.0 78 39.7
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 1.7e-06 57.0 72 43.1
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 1.7e-06 57.0 76 40.8
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 1.7e-06 57.0 78 41.0
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 2.2e-06 56.6 75 40.0
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 2.2e-06 56.6 75 41.3
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 2.2e-06 56.6 56 46.4
PRCOL_00003986 Prasinoderma coloniale HOM05D000916 ORTHO05D009274 2.2e-06 56.6 105 38.1
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 2.2e-06 56.6 72 41.7
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 2.2e-06 56.6 72 41.7
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 2.9e-06 56.2 72 40.3
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 2.9e-06 56.2 57 45.6
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.9e-06 56.2 57 45.6
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.9e-06 56.2 57 45.6
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.9e-06 56.2 57 45.6
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.9e-06 56.2 57 45.6
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 2.9e-06 56.2 78 38.5
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 2.9e-06 56.2 56 46.4
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 2.9e-06 56.2 76 40.8
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 2.9e-06 56.2 76 39.5
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 2.9e-06 56.2 57 43.9
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 2.9e-06 56.2 57 45.6
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 2.9e-06 56.2 57 43.9
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 3.8e-06 55.8 72 40.3
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 3.8e-06 55.8 57 45.6
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 3.8e-06 55.8 56 44.6
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 3.8e-06 55.8 72 41.7
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 3.8e-06 55.8 72 41.7
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 3.8e-06 55.8 72 41.7
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 3.8e-06 55.8 72 40.3
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 3.8e-06 55.8 72 41.7
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 4.9e-06 55.5 56 44.6
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 4.9e-06 55.5 56 44.6
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 4.9e-06 55.5 72 41.7
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 4.9e-06 55.5 69 43.5
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 4.9e-06 55.5 72 40.3
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 4.9e-06 55.5 72 41.7
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 4.9e-06 55.5 75 40.0
MD02G1299100 Malus domestica HOM05D000916 ORTHO05D009274 4.9e-06 55.5 28 92.9
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 4.9e-06 55.5 72 41.7
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 6.4e-06 55.1 72 40.3
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 6.4e-06 55.1 56 44.6
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 6.4e-06 55.1 72 38.9
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 6.4e-06 55.1 56 44.6
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 6.4e-06 55.1 56 44.6
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 6.4e-06 55.1 56 44.6
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 6.4e-06 55.1 56 44.6
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 6.4e-06 55.1 56 44.6
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 8.4e-06 54.7 57 43.9
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 8.4e-06 54.7 57 43.9
arahy.Tifrunner.gnm1.ann1.D8LDTS Arachis hypogaea HOM05D002376 ORTHO05D004654 8.4e-06 54.7 130 31.5
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 8.4e-06 54.7 56 44.6
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 8.4e-06 54.7 56 44.6
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 8.4e-06 54.7 56 44.6
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 8.4e-06 54.7 72 40.3
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 8.4e-06 54.7 57 43.9
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 8.4e-06 54.7 72 40.3
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 8.4e-06 54.7 72 40.3
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 8.4e-06 54.7 72 41.7
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 8.4e-06 54.7 73 39.7
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 8.4e-06 54.7 72 41.7
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 8.4e-06 54.7 72 40.3


User provided reference genes

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