Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046008 Camellia sinensis var. sinensis HOM05D003188 ORTHO05D003602 9.2e-87 323.6 167 100.0
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 1.2e-65 253.4 146 88.4
Rhsim09G0110400 Rhododendron simsii HOM05D003188 ORTHO05D003602 4.2e-55 218.4 151 78.1
QL10p022977 Quercus lobata HOM05D003188 ORTHO05D003602 2.1e-54 216.1 145 75.9
Lj5A144T29 Lonicera japonica HOM05D003188 ORTHO05D003602 4.6e-54 214.9 140 80.0
Sc02g0004270 Simmondsia chinensis HOM05D003188 ORTHO05D003602 1.3e-53 213.4 145 77.2
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 6.7e-53 211.1 145 75.9
Peaxi162Scf00015g00637 Petunia axillaris HOM05D003188 ORTHO05D003602 8.7e-53 210.7 145 79.3
PGSC0003DMG400005704 Solanum tuberosum HOM05D003188 ORTHO05D003602 8.7e-53 210.7 145 78.6
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 1.5e-52 209.9 145 75.2
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 1.9e-52 209.5 158 69.6
Thecc.01G174500 Theobroma cacao HOM05D003188 ORTHO05D003602 1.9e-52 209.5 145 75.2
Solyc03g119790.3 Solanum lycopersicum HOM05D003188 ORTHO05D003602 2.5e-52 209.1 145 77.2
Sopen03g038640 Solanum pennellii HOM05D003188 ORTHO05D003602 3.3e-52 208.8 145 78.6
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 4.3e-52 208.4 145 73.1
MSTRG.14163 Avicennia marina HOM05D003188 ORTHO05D003602 7.4e-52 207.6 146 72.6
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 2.8e-51 205.7 138 76.8
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 4.8e-51 204.9 145 74.5
TAR371G0535 Trochodendron aralioides HOM05D003188 ORTHO05D003602 8.2e-51 204.1 145 73.8
CAN.G438.112 Capsicum annuum HOM05D003188 ORTHO05D003602 1.4e-50 203.4 145 76.6
SalBow7G4400 Salvia bowleyana HOM05D003188 ORTHO05D003602 1.4e-50 203.4 145 72.4
Nitab4.5_0003716g0120 Nicotiana tabacum HOM05D003188 ORTHO05D003602 1.8e-50 203.0 145 76.6
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 1.8e-50 203.0 124 83.9
Lj9C432G3 Lonicera japonica HOM05D003188 ORTHO05D003602 3.1e-50 202.2 134 82.1
Nn3g17701 Nelumbo nucifera HOM05D003188 ORTHO05D003602 5.3e-50 201.4 146 72.6
Nitab4.5_0000410g0090 Nicotiana tabacum HOM05D003188 ORTHO05D003602 5.3e-50 201.4 145 75.9
Oeu050638.1 Olea europaea HOM05D003188 ORTHO05D003602 6.9e-50 201.1 146 72.6
Duzib133G0881 Durio zibethinus HOM05D003188 ORTHO05D003602 3.4e-49 198.7 145 70.3
CiPaw.09G173500 Carya illinoinensis HOM05D003188 ORTHO05D003602 5.8e-49 198.0 145 71.7
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 1.0e-48 197.2 145 73.1
Ciclev10019993m.g Citrus clementina HOM05D003188 ORTHO05D003602 1.7e-48 196.4 145 72.4
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 2.2e-48 196.1 145 69.7
TAR629G2124 Trochodendron aralioides HOM05D003188 ORTHO05D003602 2.9e-48 195.7 146 71.9
Duzib138G0729 Durio zibethinus HOM05D003188 ORTHO05D003602 3.8e-48 195.3 146 71.2
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 3.8e-48 195.3 147 70.1
MELO3C017285.2 Cucumis melo HOM05D003188 ORTHO05D003602 4.9e-48 194.9 145 69.7
Prupe.5G216800 Prunus persica HOM05D003188 ORTHO05D003602 6.5e-48 194.5 147 70.1
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 1.1e-47 193.7 131 74.0
MD14G1221400 Malus domestica HOM05D003188 ORTHO05D003602 1.4e-47 193.4 147 69.4
Gohir.A11G155400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.9e-47 193.0 135 74.1
Gohir.D11G162400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.9e-47 193.0 135 74.1
Gorai.007G172700 Gossypium raimondii HOM05D003188 ORTHO05D003602 1.9e-47 193.0 135 74.1
PGR083G2637 Punica granatum HOM05D003188 ORTHO05D003602 1.9e-47 193.0 135 71.9
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 3.2e-47 192.2 136 74.3
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 4.2e-47 191.8 162 66.7
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 9.3e-47 190.7 145 69.0
MSTRG.6539 Avicennia marina HOM05D003188 ORTHO05D003602 3.5e-46 188.7 146 65.8
CANSAT64G2546 Cannabis sativa HOM05D003188 ORTHO05D003602 3.5e-46 188.7 146 72.6
Potri.010G102000 Populus trichocarpa HOM05D003188 ORTHO05D003602 3.5e-46 188.7 141 70.2
HanXRQChr02g0055261 Helianthus annuus HOM05D003188 ORTHO05D003602 7.9e-46 187.6 145 68.3
Manes.12G158000 Manihot esculenta HOM05D003188 ORTHO05D003602 1.3e-45 186.8 146 70.5
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 1.3e-45 186.8 140 70.0
ATR0787G140 Amborella trichopoda HOM05D003188 ORTHO05D003602 6.7e-45 184.5 146 67.1
CDE05G2945 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 8.7e-45 184.1 146 65.8
Oeu058326.2 Olea europaea HOM05D003188 ORTHO05D003602 4.3e-44 181.8 190 56.3
Sabra10G0074600 Salix brachista HOM05D003188 ORTHO05D003602 5.7e-44 181.4 129 72.9
Atru.chr12.1495 Acer truncatum HOM05D003188 ORTHO05D003602 9.7e-44 180.6 145 68.3
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 1.6e-43 179.9 147 67.3
SGA_v2.0_scaffold159G37605 Striga asiatica HOM05D003188 ORTHO05D003602 1.6e-43 179.9 146 67.8
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 2.2e-43 179.5 130 70.8
Atru.chr3.1254 Acer truncatum HOM05D003188 ORTHO05D003602 8.2e-43 177.6 145 67.6
Cpa.g.sc13.60 Carica papaya HOM05D003188 ORTHO05D003602 1.8e-42 176.4 214 50.5
CiPaw.12G051000 Carya illinoinensis HOM05D003188 ORTHO05D003602 3.1e-42 175.6 145 64.1
Potri.015G051000 Populus trichocarpa HOM05D003188 ORTHO05D003602 9.0e-42 174.1 120 75.8
Aqoxy5G00582 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 2.6e-41 172.6 146 63.0
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 2.6e-41 172.6 156 62.2
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.6e-41 172.6 145 66.2
Gohir.D07G087600 Gossypium hirsutum HOM05D003188 ORTHO05D003602 2.6e-41 172.6 137 66.4
Migut.H01201 Erythranthe guttata HOM05D003188 ORTHO05D003602 3.4e-41 172.2 147 64.6
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 3.4e-41 172.2 145 66.2
Aqoxy3G00385 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 5.9e-41 171.4 145 61.4
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 5.9e-41 171.4 148 62.8
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 5.9e-41 171.4 137 65.7
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 5.9e-41 171.4 147 62.6
Lj9A216T28 Lonicera japonica HOM05D003188 ORTHO05D003602 7.6e-41 171.0 111 82.0
Hund13349 Selenicereus undatus HOM05D003188 ORTHO05D003602 1.3e-40 170.2 141 66.7
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 1.7e-40 169.9 147 64.6
Atru.chr2.2945 Acer truncatum HOM05D003188 ORTHO05D003602 2.9e-40 169.1 135 71.1
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 2.9e-40 169.1 147 60.5
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 2.9e-40 169.1 147 63.9
THA.LOC104811602 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 3.8e-40 168.7 146 63.0
VMungo1215G2257 Vigna mungo HOM05D003188 ORTHO05D003602 3.8e-40 168.7 147 61.9
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 5.0e-40 168.3 147 61.9
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.9e-39 166.4 145 64.8
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 2.5e-39 166.0 147 63.3
THA.LOC104803141 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 2.5e-39 166.0 146 61.0
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 7.2e-39 164.5 147 63.3
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 9.3e-39 164.1 147 61.2
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 1.2e-38 163.7 147 64.6
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 2.1e-38 162.9 147 62.6
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 2.1e-38 162.9 147 59.9
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 2.7e-38 162.5 147 61.2
HPP92_009419 Vanilla planifolia HOM05D003188 ORTHO05D003602 2.7e-38 162.5 148 58.8
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 4.6e-38 161.8 141 62.4
Lsat_1_v5_gn_8_11621 Lactuca sativa HOM05D003188 ORTHO05D003602 7.9e-38 161.0 122 71.3
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 1.0e-37 160.6 147 61.9
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 1.4e-37 160.2 146 61.6
Actinidia37847 Actinidia chinensis HOM05D003188 ORTHO05D003602 1.8e-37 159.8 145 62.1
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 2.3e-37 159.5 158 57.0
Gohir.A07G084627 Gossypium hirsutum HOM05D003188 ORTHO05D003602 2.3e-37 159.5 130 64.6
AL1G12780 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 5.1e-37 158.3 146 59.6
ECA234G2517 Erigeron canadensis HOM05D003188 ORTHO05D003602 8.8e-37 157.5 146 58.9
SEGI_20097 Sequoiadendron giganteum HOM05D003188 ORTHO05D003602 1.1e-36 157.1 134 61.9
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 1.5e-36 156.8 147 62.6
CARHR002580 Cardamine hirsuta HOM05D003188 ORTHO05D003602 2.5e-36 156.0 146 61.0
AT1G03280 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 4.3e-36 155.2 146 59.6
PSO478G1890 Papaver somniferum HOM05D003188 ORTHO05D003602 5.7e-36 154.8 144 60.4
Carub.0001s0239 Capsella rubella HOM05D003188 ORTHO05D003602 7.4e-36 154.5 146 60.3
PSO017G4721 Papaver somniferum HOM05D003188 ORTHO05D003602 7.4e-36 154.5 144 60.4
RcHm_v2.0_Chr7g0184551 Rosa chinensis HOM05D003188 ORTHO05D003602 9.7e-36 154.1 115 67.0
arahy.Tifrunner.gnm1.ann1.8N8EX2 Arachis hypogaea HOM05D003188 ORTHO05D003602 4.8e-35 151.8 148 60.1
arahy.Tifrunner.gnm1.ann1.73QXIF Arachis hypogaea HOM05D003188 ORTHO05D003602 6.3e-35 151.4 148 59.5
Sp1g02280 Schrenkiella parvula HOM05D003188 ORTHO05D003602 6.3e-35 151.4 146 58.9
Thhalv10023437m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 2.4e-34 149.4 147 57.8
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 1.2e-33 147.1 132 61.4
Ah.16g101610 Amaranthus hybridus HOM05D003188 ORTHO05D003602 1.5e-33 146.7 132 60.6
FAN18G3545 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.0e-33 146.4 116 67.2
Aa31LG1G9260 Aethionema arabicum HOM05D003188 ORTHO05D003602 4.5e-33 145.2 135 61.5
BcaC05g24548 Brassica carinata HOM05D003188 ORTHO05D003602 5.9e-33 144.8 144 56.9
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 2.9e-32 142.5 144 57.6
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.9e-32 142.5 144 57.6
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 2.9e-32 142.5 144 57.6
BraA10t42457Z Brassica rapa HOM05D003188 ORTHO05D000504 2.9e-32 142.5 144 57.6
Migut.M00376 Erythranthe guttata HOM05D003188 ORTHO05D003602 3.8e-32 142.1 135 57.8
Dinv36901 Davidia involucrata HOM05D003188 ORTHO05D003602 6.5e-32 141.4 86 88.4
Aqoxy3G03899 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 1.1e-31 140.6 146 54.1
Hund05006 Selenicereus undatus HOM05D003188 ORTHO05D003602 1.4e-31 140.2 141 56.7
Dinv38591 Davidia involucrata HOM05D003188 ORTHO05D003602 5.5e-31 138.3 83 85.5
Lsat_1_v5_gn_6_3380 Lactuca sativa HOM05D003188 ORTHO05D003602 5.5e-31 138.3 122 62.3
AL7G33550 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 3.0e-29 132.5 146 54.1
Carub.0007s2083 Capsella rubella HOM05D003188 ORTHO05D003602 3.0e-29 132.5 145 57.2
Mapoly0046s0071 Marchantia polymorpha HOM05D003188 ORTHO05D003602 6.7e-29 131.3 148 54.1
CARHR227350 Cardamine hirsuta HOM05D003188 ORTHO05D003602 8.8e-29 131.0 148 52.7
FAN13G2738 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.1e-28 130.6 116 62.9
AT4G20340 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 3.3e-28 129.0 146 52.7
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 1.3e-27 127.1 124 58.9
vmacro10787 Vaccinium macrocarpon HOM05D003188 ORTHO05D003602 4.1e-26 122.1 86 74.4
Zm00001eb028110 Zea mays HOM05D003188 ORTHO05D003602 5.3e-26 121.7 136 54.4
Carub.0007s2063 Capsella rubella HOM05D003188 ORTHO05D003602 3.4e-25 119.0 143 51.7
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 3.4e-25 119.0 147 49.7
Zm00001eb223630 Zea mays HOM05D003188 ORTHO05D003602 2.2e-24 116.3 124 55.6
AT4G20810 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 2.7e-22 109.4 136 44.9
CDE05G0460 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 8.0e-22 107.8 73 71.2
Pp3c27_3010 Physcomitrium patens HOM05D003188 ORTHO05D003602 6.7e-21 104.8 140 46.4
Thhalv10025149m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 1.1e-20 104.0 147 44.2
SHI18941 Sapria himalayana HOM05D003188 ORTHO05D003602 2.6e-20 102.8 68 67.6
BcaC09g51427 Brassica carinata HOM05D003188 ORTHO05D003602 3.3e-20 102.4 138 50.0
C01p13220 Brassica napus HOM05D003188 ORTHO05D003602 3.3e-20 102.4 138 50.0
BolC1t01296H Brassica oleracea HOM05D003188 ORTHO05D003602 2.2e-19 99.8 138 49.3
A01p11180 Brassica napus HOM05D003188 ORTHO05D003602 2.8e-19 99.4 138 49.3
BraA01t01064Z Brassica rapa HOM05D003188 ORTHO05D003602 3.7e-19 99.0 138 48.6
PSO170G0558 Papaver somniferum HOM05D003188 ORTHO05D003602 4.8e-19 98.6 139 48.9
SMO196G0219 Selaginella moellendorffii HOM05D003188 ORTHO05D003602 1.1e-18 97.4 137 46.0
Cpa.g.sc79.52 Carica papaya HOM05D003188 ORTHO05D003602 7.0e-18 94.7 72 72.2
AagrBONN_evm.TU.Sc2ySwM_228.1658 Anthoceros agrestis HOM05D003188 ORTHO05D003602 5.0e-16 88.6 164 41.5
CDE05G1652 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 1.5e-15 87.0 79 60.8
FAN08G3676 Fragaria x ananassa HOM05D003188 ORTHO05D003602 7.2e-15 84.7 68 64.7
FAN03G2249 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.2e-14 84.0 155 40.0
FAN06G4431 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.2e-14 84.0 154 40.9
FAN06G5104 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.2e-14 84.0 154 40.9
FAN17G1577 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.2e-14 84.0 155 40.0
CBR_g46212 Chara braunii HOM05D003188 ORTHO05D003602 3.6e-14 82.4 132 42.4
RcHm_v2.0_Chr1g0365801 Rosa chinensis HOM05D003188 ORTHO05D003602 2.3e-13 79.7 139 41.7
CDE05G0152 Ceratophyllum demersum HOM05D002339 ORTHO05D002545 4.0e-13 79.0 74 58.1
Os12g0134300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 5.7e-12 75.1 129 40.3
FAN18G2667 Fragaria x ananassa HOM05D003188 ORTHO05D003602 6.3e-11 71.6 75 53.3
Sp7g18890 Schrenkiella parvula HOM05D003188 ORTHO05D003602 1.1e-10 70.9 84 51.2
AL7G33340 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 4.2e-07 58.9 148 32.4


User provided reference genes

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