Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1442.2 704 100.0
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1410.2 707 97.7
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1245.7 712 85.3
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1202.6 712 82.6
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1171.4 711 81.0
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1161.7 713 79.8
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 0.0e+00 1155.6 728 80.1
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1152.9 712 79.8
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1147.5 712 77.7
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1146.7 711 78.6
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1144.0 707 79.5
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 0.0e+00 1141.7 708 78.8
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1140.6 711 77.9
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1139.0 712 77.1
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1136.7 710 78.6
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1136.3 714 78.2
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1135.9 712 77.4
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1130.5 712 77.2
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1130.5 714 78.2
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1129.4 712 76.8
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1128.6 710 77.7
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1127.5 714 77.5
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 0.0e+00 1122.1 709 78.0
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 0.0e+00 1120.1 711 77.4
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 0.0e+00 1120.1 715 76.1
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1119.8 711 77.1
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1119.0 697 78.2
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 0.0e+00 1116.3 713 75.9
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 0.0e+00 1114.0 716 75.6
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1110.9 707 76.2
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 0.0e+00 1109.4 707 76.1
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 0.0e+00 1108.6 716 75.4
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 0.0e+00 1108.2 709 76.9
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1107.0 707 76.7
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1107.0 711 76.2
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 0.0e+00 1102.8 698 78.5
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 0.0e+00 1102.4 710 76.2
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 0.0e+00 1101.7 712 75.1
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 0.0e+00 1098.2 704 75.7
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 0.0e+00 1098.2 718 76.3
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1097.4 713 76.2
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 0.0e+00 1097.0 710 75.5
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1095.9 713 76.3
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 0.0e+00 1094.7 705 76.0
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 0.0e+00 1094.0 704 76.0
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 0.0e+00 1094.0 709 75.3
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1094.0 713 76.0
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 0.0e+00 1093.2 705 76.9
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 0.0e+00 1087.0 698 75.9
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 0.0e+00 1086.6 744 73.1
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1083.6 715 75.2
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 0.0e+00 1083.6 705 75.2
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 0.0e+00 1083.2 709 75.9
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 0.0e+00 1082.0 702 75.4
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 0.0e+00 1080.9 709 75.2
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 0.0e+00 1075.8 700 75.7
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 0.0e+00 1075.1 700 75.1
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 4.8e-312 1074.7 704 75.1
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 9.6e-312 1073.2 792 68.8
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 5.8e-311 1070.5 707 74.5
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 1.3e-310 1069.3 706 74.2
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 1.1e-309 1066.2 706 75.9
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.4e-309 1065.8 736 72.1
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 1.7e-307 1058.9 706 75.2
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.5e-303 1045.0 669 76.7
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 7.1e-298 1026.9 698 72.3
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 9.3e-298 1026.5 712 71.8
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 9.3e-298 1026.5 711 71.4
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 1.2e-297 1026.2 698 72.2
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.2e-297 1026.2 732 71.0
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 3.5e-297 1024.6 688 72.4
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 7.9e-297 1023.5 705 69.9
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 1.8e-296 1022.3 693 71.9
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 2.3e-296 1021.9 698 71.9
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 1.5e-295 1019.2 695 71.4
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 2.8e-294 1015.0 694 71.0
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 2.8e-294 1015.0 699 71.8
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 3.7e-294 1014.6 697 71.2
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 6.9e-293 1010.4 694 70.9
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 5.8e-292 1007.3 684 71.5
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 7.6e-292 1006.9 775 64.9
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 8.4e-291 1003.4 699 71.5
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 1.3e-288 996.1 704 70.6
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 8.2e-286 986.9 756 65.9
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 5.9e-284 980.7 706 68.1
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 1.1e-282 976.5 560 84.5
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 2.5e-282 975.3 712 70.9
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 9.3e-282 973.4 710 69.0
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 2.7e-281 971.8 697 68.7
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 9.7e-279 963.4 702 69.7
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 1.3e-275 953.0 596 77.2
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 2.2e-270 935.6 585 78.1
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.8e-270 935.3 708 66.2
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 3.1e-261 905.2 704 66.8
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 4.5e-260 901.4 670 66.0
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 8.8e-256 887.1 715 62.7
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 2.4e-245 852.4 549 76.9
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 3.5e-236 822.0 742 61.5
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 1.1e-224 783.9 523 74.4
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 2.2e-214 749.6 688 54.8
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 5.2e-208 728.4 687 53.7
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 4.6e-188 662.1 692 49.4
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 3.3e-186 656.0 441 72.6
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 6.9e-184 648.3 880 43.0
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 2.1e-172 610.1 843 42.5
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 1.5e-170 604.0 681 48.5
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 3.7e-169 599.4 386 75.1
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 9.4e-165 584.7 490 59.8
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 4.4e-154 549.3 749 43.1
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 4.5e-143 512.7 729 41.7
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 7.0e-136 488.8 333 76.9
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 1.3e-129 468.0 812 37.6
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 1.3e-129 468.0 722 39.1
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 7.7e-127 458.8 748 38.5
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.7e-118 431.0 303 71.0
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 2.1e-108 397.5 351 59.3
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 3.2e-80 303.9 201 73.6
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 2.8e-76 290.8 270 54.8
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 3.7e-68 263.8 193 69.4
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.3e-62 245.4 164 71.3
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 2.1e-55 221.5 137 77.4
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 1.1e-40 172.6 112 74.1
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 7.9e-39 166.4 102 79.4
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 5.1e-38 163.7 176 54.5
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 8.5e-33 146.4 112 60.7
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 8.0e-31 139.8 122 57.4
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 6.3e-28 130.2 100 69.0
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 6.1e-23 113.6 61 83.6
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.6e-18 99.0 149 44.3
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 7.2e-16 90.1 62 66.1
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 1.6e-15 89.0 59 69.5
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 3.6e-15 87.8 63 66.7
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 2.0e-13 82.0 45 82.2
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 1.7e-09 68.9 46 65.2
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 8.6e-09 66.6 40 75.0


User provided reference genes

Program Settings