Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.0e-46 188.7 96 100.0
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.3e-45 185.3 96 97.9
CSS0041671 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.0e-33 145.6 96 84.4
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 2.4e-23 112.1 70 78.6
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 1.6e-22 109.4 70 77.1
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 4.6e-22 107.8 70 75.7
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 1.0e-21 106.7 70 72.9
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 1.0e-21 106.7 72 72.2
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 2.3e-21 105.5 70 74.3
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 3.0e-21 105.1 70 72.9
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 3.9e-21 104.8 70 72.9
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 5.1e-21 104.4 71 71.8
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 8.6e-21 103.6 70 71.4
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 1.1e-20 103.2 70 71.4
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.1e-20 103.2 70 71.4
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 1.5e-20 102.8 67 74.6
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 1.9e-20 102.4 70 70.0
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 1.9e-20 102.4 70 70.0
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 2.5e-20 102.1 70 71.4
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 2.5e-20 102.1 70 70.0
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 3.3e-20 101.7 70 72.9
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 4.3e-20 101.3 70 70.0
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 5.6e-20 100.9 70 70.0
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 5.6e-20 100.9 70 68.6
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 5.6e-20 100.9 70 68.6
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 1.2e-19 99.8 68 73.5
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 1.6e-19 99.4 67 73.1
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 4.7e-19 97.8 68 72.1
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 8.1e-19 97.1 60 80.0
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 5.2e-18 94.4 60 76.7
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 6.8e-18 94.0 67 65.7
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 6.8e-18 94.0 70 62.9
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 8.9e-18 93.6 67 64.2
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 8.9e-18 93.6 74 66.2
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 1.2e-17 93.2 71 69.0
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 1.5e-17 92.8 67 64.2
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 1.5e-17 92.8 69 69.6
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 2.6e-17 92.0 60 70.0
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 4.4e-17 91.3 68 69.1
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 4.4e-17 91.3 71 67.6
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 7.6e-17 90.5 67 65.7
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 9.9e-17 90.1 71 66.2
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 1.7e-16 89.4 68 64.7
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 1.7e-16 89.4 68 69.1
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 1.7e-16 89.4 68 64.7
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.2e-16 89.0 67 65.7
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 2.2e-16 89.0 71 64.8
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 2.9e-16 88.6 67 64.2
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 2.9e-16 88.6 67 64.2
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 2.9e-16 88.6 67 65.7
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 3.7e-16 88.2 67 65.7
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 3.7e-16 88.2 68 66.2
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 3.7e-16 88.2 67 62.7
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 4.9e-16 87.8 72 62.5
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 6.4e-16 87.4 69 62.3
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 6.4e-16 87.4 69 60.9
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 8.3e-16 87.0 68 63.2
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 1.1e-15 86.7 68 63.2
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 1.1e-15 86.7 68 63.2
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 1.4e-15 86.3 69 59.4
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.4e-15 86.3 68 61.8
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 1.9e-15 85.9 68 63.2
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 3.2e-15 85.1 68 66.2
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 4.1e-15 84.7 68 60.3
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 4.1e-15 84.7 72 59.7
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 5.4e-15 84.3 68 63.2
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 5.4e-15 84.3 71 63.4
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.6e-14 82.8 67 62.7
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 1.6e-14 82.8 72 54.2
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 1.6e-14 82.8 69 63.8
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 2.1e-14 82.4 69 63.8
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 4.6e-14 81.3 69 63.8
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 1.3e-13 79.7 71 54.9
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 2.3e-13 79.0 69 60.9
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 2.3e-13 79.0 71 53.5
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 3.9e-13 78.2 69 59.4
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 6.6e-13 77.4 69 59.4
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 1.5e-12 76.3 69 59.4
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 1.5e-12 76.3 69 59.4
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 1.5e-12 76.3 69 59.4
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 1.5e-12 76.3 69 59.4
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 1.9e-12 75.9 69 59.4
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 3.3e-12 75.1 61 62.3
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 4.3e-12 74.7 62 64.5
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 5.6e-12 74.3 69 58.0
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 9.6e-12 73.6 69 58.0
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 2.4e-10 68.9 71 53.5
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 2.0e-09 65.9 54 53.7
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 1.3e-08 63.2 61 52.5
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 4.9e-08 61.2 67 56.7
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 3.2e-07 58.5 68 51.5
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 1.2e-06 56.6 69 46.4
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 3.5e-06 55.1 32 65.6


User provided reference genes

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