Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045195 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.2e-47 190.7 93 100.0
CSS0041994 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.0e-39 166.4 93 84.9
CSS0032088 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.0e-38 162.2 92 83.7
CSS0046575 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.4e-31 139.4 92 71.7
CSS0013630 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.5e-30 133.7 84 76.2
CSS0028214 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.5e-30 133.7 92 66.3
CSS0023133 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.7e-29 132.5 93 67.7
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.9e-29 131.0 92 67.4
CSS0009370 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.4e-29 130.6 92 67.4
CSS0044722 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 8.3e-29 130.2 93 66.7
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.1e-28 129.8 85 74.1
CSS0026614 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.4e-28 129.4 93 64.5
CSS0010523 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.9e-28 129.0 93 65.6
CSS0033039 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.4e-28 127.5 91 61.5
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.4e-28 127.5 92 66.3
CSS0049818 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.2e-28 126.7 93 65.6
CSS0035385 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.2e-27 126.3 92 66.3
CSS0020468 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.7e-27 125.2 92 64.1
CSS0043443 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.5e-27 124.8 92 64.1
CSS0032809 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.0e-27 124.0 92 64.1
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.8e-27 123.6 92 66.3
CSS0027105 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-26 122.9 92 63.0
CSS0007439 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.6e-26 120.6 86 64.0
CSS0016748 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 2.5e-25 118.6 92 63.0
CSS0048939 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.5e-25 116.7 80 67.5
CSS0016336 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.5e-22 109.4 86 58.1
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.9e-21 105.1 71 73.2
CSS0006955 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-20 102.4 92 53.3
CSS0001115 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.2e-20 100.1 92 50.0
CSS0006381 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.2e-20 100.1 72 65.3
CSS0004389 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.6e-19 97.8 92 52.2
CSS0002074 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.0e-19 97.4 88 51.1
CSS0032111 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.0e-18 96.7 92 52.2
CSS0045787 Camellia sinensis var. sinensis HOM05D014591 ORTHO05D000022 1.0e-18 96.7 84 53.6
CSS0028114 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-18 96.3 92 56.5
CSS0045587 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.3e-18 95.5 84 53.6
CSS0034075 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.6e-18 94.0 84 56.0
CSS0014386 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.3e-17 91.3 91 44.0
CSS0010509 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.6e-16 89.4 85 42.4
CSS0037140 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.6e-16 88.2 91 45.1
CSS0007605 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.7e-16 87.8 87 44.8
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-14 82.8 85 45.9
CSS0017504 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.6e-14 82.0 72 51.4
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.8e-13 78.2 85 42.4
CSS0041944 Camellia sinensis var. sinensis HOM05D014591 ORTHO05D000022 1.4e-12 76.3 85 40.0
CSS0028054 Camellia sinensis var. sinensis HOM05D014591 ORTHO05D000022 2.4e-12 75.5 85 40.0
CSS0037375 Camellia sinensis var. sinensis HOM05D014591 ORTHO05D000022 3.2e-12 75.1 85 40.0
Actinidia35690 Actinidia chinensis HOM05D000003 ORTHO05D000022 5.4e-12 74.3 87 42.5
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.1e-12 73.9 92 40.2
CSS0027359 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.1e-12 73.9 86 39.5
vmacro19136 Vaccinium macrocarpon HOM05D001065 ORTHO05D003103 2.7e-11 72.0 92 40.2
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.0e-11 70.9 86 39.5
vmacro08191 Vaccinium macrocarpon HOM05D000548 ORTHO05D000987 6.0e-11 70.9 86 43.0
Hma1.2p1_0333F.1_g128210 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 7.8e-11 70.5 86 46.5
Hma1.2p1_3263F.1_g334663 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 7.8e-11 70.5 86 46.5
Hma1.2p1_3263F.1_g334666 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 7.8e-11 70.5 86 46.5
vmacro01816 Vaccinium macrocarpon HOM05D000489 ORTHO05D000372 7.8e-11 70.5 92 34.8
CSS0015976 Camellia sinensis var. sinensis HOM05D014591 ORTHO05D000022 1.0e-10 70.1 85 37.6
CSS0038564 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.0e-10 70.1 64 50.0
CSS0036470 Camellia sinensis var. sinensis HOM05D014591 ORTHO05D000022 1.3e-10 69.7 79 39.2
Lj1P685T53 Lonicera japonica HOM05D000155 ORTHO05D000022 1.7e-10 69.3 88 39.8
Lj1P687T17 Lonicera japonica HOM05D000155 ORTHO05D000022 1.7e-10 69.3 88 39.8
Lj1P688T36 Lonicera japonica HOM05D000155 ORTHO05D000022 1.7e-10 69.3 88 39.8
Atru.chr3.867 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-10 68.9 93 38.7
CSS0049549 Camellia sinensis var. sinensis HOM05D014591 ORTHO05D000022 3.0e-10 68.6 85 38.8
vmacro08980 Vaccinium macrocarpon HOM05D000055 ORTHO05D002202 6.6e-10 67.4 92 37.0
CSS0001881 Camellia sinensis var. sinensis HOM05D014591 ORTHO05D000022 1.5e-09 66.2 85 36.5
vmacro09610 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.5e-09 66.2 93 35.5
CSS0049107 Camellia sinensis var. sinensis HOM05D006120 ORTHO05D007913 1.9e-09 65.9 79 38.0
Solyc07g056380.1 Solanum lycopersicum HOM05D000003 ORTHO05D000022 1.9e-09 65.9 86 41.9
vmacro20205 Vaccinium macrocarpon HOM05D002235 ORTHO05D006252 3.3e-09 65.1 80 37.5
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-09 64.3 88 37.5
Nitab4.5_0007519g0010 Nicotiana tabacum HOM05D000003 ORTHO05D000022 5.6e-09 64.3 89 38.2
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 7.3e-09 63.9 88 37.5
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.3e-09 63.9 87 39.1
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 9.6e-09 63.5 91 35.2
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-08 63.2 92 32.6
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-08 63.2 92 34.8
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 63.2 88 33.0
Nitab4.5_0007388g0060 Nicotiana tabacum HOM05D000003 ORTHO05D000022 1.3e-08 63.2 89 37.1
vmacro18663 Vaccinium macrocarpon HOM05D000010 ORTHO05D000022 1.3e-08 63.2 70 41.4
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-08 62.8 88 36.4
CSS0011514 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.6e-08 62.8 45 66.7
CSS0020344 Camellia sinensis var. sinensis HOM05D014591 ORTHO05D000022 1.6e-08 62.8 81 34.6
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 1.6e-08 62.8 92 30.4
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 2.1e-08 62.4 88 34.1
RcHm_v2.0_Chr2g0152401 Rosa chinensis HOM05D000003 ORTHO05D000022 2.8e-08 62.0 92 30.4
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 3.6e-08 61.6 84 36.9
Atru.chr2.1762 Acer truncatum HOM05D000003 ORTHO05D000022 6.2e-08 60.8 86 38.4
Lj9P217T13 Lonicera japonica HOM05D000003 ORTHO05D000022 6.2e-08 60.8 87 33.3
Sopen10g008360 Solanum pennellii HOM05D000003 ORTHO05D000022 6.2e-08 60.8 89 39.3
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 6.2e-08 60.8 71 42.3
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-08 60.5 92 31.5
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-08 60.5 92 33.7
Atru.chr2.971 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-08 60.5 92 33.7
Atru.chr1.3262 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-07 60.1 88 36.4
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-07 60.1 88 35.2
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-07 60.1 88 31.8
Atru.chr4.458 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-07 60.1 88 38.6
CSS0031232 Camellia sinensis var. sinensis HOM05D014591 ORTHO05D000022 1.1e-07 60.1 62 41.9
Hma1.2p1_0931F.1_g238170 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 1.1e-07 60.1 86 38.4
Sopen10g006600 Solanum pennellii HOM05D000003 ORTHO05D001349 1.1e-07 60.1 87 40.2
vmacro01820 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 1.1e-07 60.1 86 38.4
Atru.chr2.2857 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-07 59.7 87 35.6
Atru.chr3.2099 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-07 59.3 88 34.1
Atru.chr4.172 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-07 59.3 88 35.2
Atru.chr5.2238 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-07 59.3 88 35.2
vmacro16872 Vaccinium macrocarpon HOM05D000003 ORTHO05D000022 2.4e-07 58.9 86 32.6
vmacro00861 Vaccinium macrocarpon HOM05D000042 ORTHO05D000980 3.1e-07 58.5 86 39.5
vmacro11435 Vaccinium macrocarpon HOM05D000455 ORTHO05D426981 3.1e-07 58.5 73 41.1
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-07 58.2 87 33.3
Atru.chr3.1879 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-07 58.2 83 36.1
Atru.chr9.518 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-07 58.2 85 35.3
Atru.chr3.2200 Acer truncatum HOM05D000003 ORTHO05D000022 5.3e-07 57.8 93 31.2
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 5.3e-07 57.8 74 37.8
Nitab4.5_0000593g0300 Nicotiana tabacum HOM05D000003 ORTHO05D000022 5.3e-07 57.8 70 40.0
QL01p016530 Quercus lobata HOM05D000003 ORTHO05D000022 5.3e-07 57.8 89 31.5
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 5.3e-07 57.8 92 29.3
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 6.9e-07 57.4 88 33.0
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 6.9e-07 57.4 92 31.5
Atru.chr3.2744 Acer truncatum HOM05D000003 ORTHO05D000022 6.9e-07 57.4 78 35.9
Atru.chr4.899 Acer truncatum HOM05D000003 ORTHO05D000022 6.9e-07 57.4 88 33.0
vmacro11643 Vaccinium macrocarpon HOM05D000490 ORTHO05D000785 6.9e-07 57.4 94 30.9
Actinidia03487 Actinidia chinensis HOM05D000003 ORTHO05D000022 9.0e-07 57.0 74 35.1
VMungo1383G2358 Vigna mungo HOM05D000005 ORTHO05D000012 9.0e-07 57.0 88 36.4
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-06 56.6 87 35.6
Glyma.13G224100 Glycine max HOM05D000062 ORTHO05D000043 1.2e-06 56.6 89 34.8
Solyc10g018550.1 Solanum lycopersicum HOM05D000003 ORTHO05D000022 1.2e-06 56.6 89 38.2
Atru.chr1.1701 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-06 56.2 87 35.6
CSS0039165 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-06 56.2 59 44.1
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 1.5e-06 56.2 89 33.7
RcHm_v2.0_Chr3g0484381 Rosa chinensis HOM05D000003 ORTHO05D000022 1.5e-06 56.2 92 29.3
RcHm_v2.0_Chr3g0484471 Rosa chinensis HOM05D000003 ORTHO05D000022 1.5e-06 56.2 92 29.3
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-06 55.8 88 30.7
Atru.chr10.1106 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-06 55.8 92 31.5
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-06 55.8 87 35.6
Atru.chr9.658 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-06 55.8 87 34.5
Psat1g119200 Pisum sativum HOM05D000003 ORTHO05D000022 2.0e-06 55.8 88 34.1
RcHm_v2.0_Chr4g0426191 Rosa chinensis HOM05D000003 ORTHO05D000022 2.0e-06 55.8 91 30.8
Atru.chr8.699 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-06 55.5 86 31.4
Phvul.001G128200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 2.6e-06 55.5 88 35.2
RcHm_v2.0_Chr5g0016411 Rosa chinensis HOM05D000003 ORTHO05D000022 2.6e-06 55.5 92 28.3
Atru.chr12.1173 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-06 55.1 87 34.5
Atru.chr13.1498 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-06 55.1 88 30.7
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-06 55.1 74 37.8
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 4.4e-06 54.7 75 33.3
Atru.chr4.1024 Acer truncatum HOM05D000003 ORTHO05D000022 5.8e-06 54.3 88 33.0
Atru.chr7.259 Acer truncatum HOM05D000003 ORTHO05D000022 5.8e-06 54.3 87 32.2
Atru.chr8.2517 Acer truncatum HOM05D000003 ORTHO05D000022 5.8e-06 54.3 73 35.6
CSS0000227 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.8e-06 54.3 84 35.7
RcHm_v2.0_Chr7g0181271 Rosa chinensis HOM05D000003 ORTHO05D000022 5.8e-06 54.3 87 36.8
RcHm_v2.0_Chr7g0224511 Rosa chinensis HOM05D000003 ORTHO05D000022 7.6e-06 53.9 92 29.3
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 9.9e-06 53.5 92 31.5
Atru.chr2.1642 Acer truncatum HOM05D000003 ORTHO05D000022 9.9e-06 53.5 87 32.2
Atru.chr2.3435 Acer truncatum HOM05D000003 ORTHO05D000022 9.9e-06 53.5 87 34.5
Atru.chr7.890 Acer truncatum HOM05D005989 ORTHO05D000022 9.9e-06 53.5 88 37.5
RcHm_v2.0_Chr2g0128961 Rosa chinensis HOM05D000003 ORTHO05D000022 9.9e-06 53.5 87 32.2


User provided reference genes

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