Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.0e-52 209.9 114 100.0
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.0e-52 209.9 114 100.0
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.9e-38 162.5 112 81.2
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 7.8e-37 157.1 99 82.8
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.0e-36 156.8 112 80.4
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 1.2e-32 143.3 110 69.1
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 2.2e-31 139.0 109 68.8
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 4.1e-30 134.8 112 69.6
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 1.6e-29 132.9 101 73.3
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.1e-29 132.5 108 69.4
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.1e-29 132.5 103 70.9
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 2.7e-29 132.1 110 66.4
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 3.5e-29 131.7 110 64.5
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 1.0e-28 130.2 110 66.4
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 1.0e-28 130.2 110 65.5
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.0e-28 130.2 110 65.5
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.3e-28 129.8 108 68.5
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 2.3e-28 129.0 107 69.2
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 3.0e-28 128.6 110 67.3
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 6.6e-28 127.5 111 64.9
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.6e-28 127.5 111 64.9
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 6.6e-28 127.5 110 68.2
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 6.6e-28 127.5 110 63.6
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 2.5e-27 125.6 110 65.5
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 2.5e-27 125.6 113 69.9
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 4.3e-27 124.8 110 63.6
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 5.6e-27 124.4 110 67.3
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 7.3e-27 124.0 107 61.7
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.6e-26 122.9 111 64.0
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 2.1e-26 122.5 111 64.9
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 2.1e-26 122.5 110 65.5
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 2.1e-26 122.5 110 65.5
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.8e-26 122.1 111 63.1
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 2.8e-26 122.1 111 63.1
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.8e-26 122.1 108 68.5
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 4.7e-26 121.3 110 60.9
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 8.1e-26 120.6 112 64.3
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.1e-25 120.2 110 63.6
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 1.8e-25 119.4 110 63.6
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.8e-25 119.4 110 61.8
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 4.0e-25 118.2 112 66.1
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 4.0e-25 118.2 107 65.4
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 4.0e-25 118.2 109 62.4
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 6.9e-25 117.5 107 61.7
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 2.0e-24 115.9 110 61.8
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 5.8e-24 114.4 113 59.3
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 7.6e-24 114.0 110 62.7
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 7.6e-24 114.0 101 66.3
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 7.6e-24 114.0 111 61.3
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 7.6e-24 114.0 107 65.4
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 9.9e-24 113.6 107 59.8
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 9.9e-24 113.6 111 63.1
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 1.7e-23 112.8 108 63.0
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 2.2e-23 112.5 101 64.4
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 2.2e-23 112.5 95 67.4
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 2.9e-23 112.1 107 64.5
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 8.4e-23 110.5 111 60.4
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 1.1e-22 110.2 101 64.4
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 1.1e-22 110.2 107 64.5
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.4e-22 109.8 114 64.9
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.4e-22 109.8 114 64.9
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 1.4e-22 109.8 114 64.9
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 1.9e-22 109.4 112 62.5
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 4.2e-22 108.2 112 60.7
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 1.2e-21 106.7 114 59.6
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 1.6e-21 106.3 108 59.3
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 4.6e-21 104.8 111 59.5
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 6.0e-21 104.4 107 62.6
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 6.0e-21 104.4 107 55.1
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 7.8e-21 104.0 108 58.3
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 1.7e-20 102.8 112 61.6
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 1.7e-20 102.8 110 55.5
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.9e-20 101.7 111 55.9
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 8.7e-20 100.5 111 61.3
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 8.7e-20 100.5 109 55.0
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 4.3e-19 98.2 101 59.4
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.3e-19 98.2 111 53.2
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 2.1e-18 95.9 108 55.6
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 4.8e-18 94.7 109 56.9
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 1.1e-17 93.6 118 52.5
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.4e-17 93.2 109 57.8
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 2.4e-17 92.4 112 58.9
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 7.6e-16 87.4 111 55.0
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.3e-15 86.7 113 54.0
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.7e-15 86.3 111 48.6
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 1.4e-14 83.2 107 49.5
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 3.2e-14 82.0 103 54.4
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 5.4e-14 81.3 109 52.3
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 5.4e-14 81.3 100 53.0
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 9.3e-14 80.5 100 53.0
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.2e-13 80.1 69 69.6
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 3.5e-13 78.6 110 43.6
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 7.9e-13 77.4 95 53.7
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 1.3e-12 76.6 69 63.8
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 8.7e-12 73.9 112 44.6
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 1.5e-11 73.2 110 44.5
SEGI_38635 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 1.9e-11 72.8 77 49.4
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 1.8e-09 66.2 103 46.6
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 2.6e-08 62.4 47 76.6
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 5.8e-08 61.2 62 53.2
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 9.9e-08 60.5 41 78.0
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 1.3e-07 60.1 42 76.2
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 1.3e-07 60.1 42 76.2
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 2.2e-07 59.3 100 45.0
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 3.8e-07 58.5 42 73.8
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 3.8e-07 58.5 42 71.4
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 6.4e-07 57.8 41 73.2
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 6.4e-07 57.8 41 73.2
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 6.4e-07 57.8 41 73.2
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 1.1e-06 57.0 41 73.2
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 1.1e-06 57.0 102 40.2


User provided reference genes

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