Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.1e-56 223.0 104 100.0
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.6e-55 216.9 104 97.1
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.1e-53 213.0 104 95.2
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.2e-53 211.1 104 94.2
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.6e-52 207.6 104 92.3
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 1.1e-48 196.4 104 86.5
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 2.4e-45 185.3 104 82.7
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.6e-44 181.0 104 79.8
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.0e-43 178.3 104 78.8
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.9e-42 175.6 104 82.7
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 9.6e-42 173.3 106 75.5
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 4.5e-39 164.5 99 75.8
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 9.9e-39 163.3 103 73.8
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.9e-38 161.0 104 74.0
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.4e-37 158.7 105 74.3
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 7.1e-37 157.1 104 72.1
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.2e-36 156.4 104 75.0
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.6e-36 156.0 104 67.3
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 1.6e-36 156.0 105 73.3
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.6e-36 156.0 104 70.2
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 2.1e-36 155.6 106 73.6
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 2.7e-36 155.2 105 72.4
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 6.0e-36 154.1 104 67.3
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 7.9e-36 153.7 104 70.2
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 2.3e-35 152.1 104 69.2
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 5.1e-35 151.0 104 69.2
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.3e-34 148.3 104 69.2
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 3.3e-34 148.3 104 69.2
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 4.3e-34 147.9 103 64.1
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 4.3e-34 147.9 103 64.1
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 5.6e-34 147.5 104 68.3
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.1e-33 145.6 104 64.4
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.8e-33 145.2 104 65.4
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 6.2e-33 144.1 104 63.5
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 8.1e-33 143.7 105 65.7
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.8e-32 142.5 104 65.4
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 4.0e-32 141.4 105 67.6
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.0e-32 141.4 104 68.3
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 4.0e-32 141.4 104 66.3
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 5.3e-32 141.0 104 65.4
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 9.0e-32 140.2 104 62.5
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.5e-31 139.4 104 64.4
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 2.6e-31 138.7 104 65.4
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.0e-30 136.7 104 61.5
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.0e-30 136.7 104 64.4
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.9e-30 135.2 104 67.3
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 4.9e-30 134.4 105 61.9
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 4.9e-30 134.4 104 58.7
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.4e-29 132.9 109 59.6
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 3.2e-29 131.7 104 60.6
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 5.5e-29 131.0 104 56.7
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 7.1e-29 130.6 104 60.6
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 7.1e-29 130.6 104 61.5
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 1.6e-28 129.4 109 58.7
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 2.1e-28 129.0 104 56.7
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 4.6e-28 127.9 107 57.9
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 1.3e-27 126.3 104 61.5
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 3.0e-27 125.2 104 60.6
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 3.9e-27 124.8 104 56.7
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 5.1e-27 124.4 105 59.0
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 5.1e-27 124.4 105 56.2
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 6.7e-27 124.0 105 54.3
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 1.1e-26 123.2 104 56.7
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 1.5e-26 122.9 104 63.5
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 1.5e-26 122.9 106 59.4
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.9e-26 122.5 104 53.8
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 4.3e-26 121.3 110 54.5
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 4.3e-26 121.3 105 58.1
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 7.4e-26 120.6 104 57.7
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 7.4e-26 120.6 104 57.7
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 7.4e-26 120.6 104 57.7
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.6e-25 119.4 104 56.7
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.1e-25 119.0 104 56.7
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 3.7e-25 118.2 75 77.3
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 1.8e-24 115.9 105 56.2
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 3.1e-24 115.2 104 53.8
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 5.3e-24 114.4 103 55.3
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 1.5e-23 112.8 104 55.8
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.6e-23 112.1 106 56.6
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.6e-23 112.1 106 56.6
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.6e-23 112.1 106 56.6
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 2.2e-22 109.0 105 53.3
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 2.9e-22 108.6 105 49.5
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 3.8e-22 108.2 111 51.4
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 5.0e-22 107.8 111 49.5
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.0e-22 107.8 104 51.9
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 5.0e-22 107.8 104 51.9
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 8.4e-22 107.1 104 54.8
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.1e-21 106.7 111 49.5
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.1e-21 106.7 111 49.5
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 1.4e-21 106.3 111 49.5
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.9e-21 105.9 111 48.6
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 2.5e-21 105.5 111 49.5
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 4.2e-21 104.8 111 48.6
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 4.2e-21 104.8 104 48.1
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 5.5e-21 104.4 109 48.6
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 7.2e-21 104.0 111 48.6
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 7.2e-21 104.0 106 49.1
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 9.3e-21 103.6 111 50.5
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 2.7e-20 102.1 111 47.7
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 4.6e-20 101.3 104 50.0
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 2.3e-19 99.0 106 50.9
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 6.7e-19 97.4 104 45.2
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 6.7e-19 97.4 104 45.2
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 8.7e-19 97.1 107 43.0
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 1.5e-18 96.3 110 45.5
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.5e-18 96.3 104 45.2
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.5e-18 96.3 111 45.9
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.9e-18 95.9 104 51.0
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 3.3e-18 95.1 104 51.9
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 4.3e-18 94.7 107 43.9
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 7.4e-18 94.0 110 44.5
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 7.4e-18 94.0 111 42.3
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 2.2e-17 92.4 107 42.1
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 2.2e-17 92.4 109 42.2
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 2.8e-17 92.0 104 48.1
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 8.2e-17 90.5 105 44.8
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 1.1e-16 90.1 104 41.3
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 2.4e-16 89.0 104 44.2
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 3.1e-16 88.6 110 40.0
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.1e-16 88.6 108 44.4
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 6.9e-16 87.4 104 45.2
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 9.0e-16 87.0 105 43.8
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 1.5e-15 86.3 104 40.4
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 2.0e-15 85.9 104 44.2
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 2.6e-15 85.5 104 39.4
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 2.6e-15 85.5 104 39.4
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 2.6e-15 85.5 104 39.4
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 1.0e-14 83.6 98 41.8
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 3.8e-14 81.6 110 39.1
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 5.0e-14 81.3 106 42.5
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 8.5e-14 80.5 111 41.4
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 8.5e-14 80.5 110 42.7
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 1.1e-13 80.1 104 43.3
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 5.5e-13 77.8 112 45.5
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 7.2e-13 77.4 105 36.2
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.2e-12 76.6 104 45.2
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.6e-12 76.3 104 37.5
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 2.1e-12 75.9 106 42.5
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.8e-11 72.8 104 36.5
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 7.4e-10 67.4 113 34.5
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.2e-09 65.9 95 37.9
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 3.7e-09 65.1 104 38.5
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 6.3e-09 64.3 95 38.9
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.1e-08 63.5 49 53.1
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 3.1e-08 62.0 110 33.6
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 5.3e-08 61.2 89 38.2
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.2e-07 60.1 103 30.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.5e-07 59.7 89 39.3
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 1.0e-06 57.0 104 31.7
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.0e-06 57.0 42 57.1


User provided reference genes

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