Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 2.0e-300 1035.0 529 100.0
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.2e-196 690.3 531 71.6
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 5.2e-192 674.9 546 68.1
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 7.2e-178 627.9 565 63.2
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.1e-173 614.0 512 67.2
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 4.3e-170 602.1 533 63.6
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 6.4e-166 588.2 532 62.6
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 8.0e-161 571.2 531 60.5
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 9.8e-159 564.3 521 61.8
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 4.9e-158 562.0 523 60.6
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 2.4e-157 559.7 528 58.9
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 3.2e-157 559.3 482 64.3
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 6.0e-156 555.1 500 63.4
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 3.0e-155 552.7 536 60.4
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.1e-152 544.3 517 59.8
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 5.2e-152 542.0 530 59.2
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 5.2e-152 542.0 538 58.6
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.1e-149 534.3 531 58.0
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 2.4e-149 533.1 536 57.5
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 5.4e-149 531.9 532 57.5
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 1.2e-148 530.8 539 58.3
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 2.1e-148 530.0 528 56.8
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 4.6e-148 528.9 530 57.9
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.7e-147 526.9 531 57.6
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 2.3e-147 526.6 531 58.4
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 3.3e-146 522.7 527 58.6
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 2.8e-145 519.6 474 61.8
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.8e-145 519.6 533 57.4
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 4.7e-145 518.8 537 57.4
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 1.4e-144 517.3 535 57.2
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 4.4e-143 512.3 531 57.3
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 4.4e-143 512.3 534 57.9
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.4e-141 507.3 546 53.7
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 2.4e-141 506.5 545 54.9
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 4.1e-141 505.8 526 56.5
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 9.2e-141 504.6 535 53.6
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 9.2e-141 504.6 519 53.6
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 9.2e-141 504.6 530 56.6
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.2e-140 504.2 528 56.8
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 2.3e-139 500.0 525 56.0
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.6e-139 498.4 544 55.7
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 6.6e-139 498.4 535 56.3
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 8.7e-139 498.0 477 59.7
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.1e-138 497.7 492 59.1
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 1.1e-138 497.7 520 53.1
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 1.2e-137 494.2 519 52.8
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 4.0e-136 489.2 569 53.3
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 9.0e-136 488.0 570 52.8
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 1.4e-133 480.7 476 59.7
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 4.6e-132 475.7 374 67.4
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 4.6e-132 475.7 528 55.3
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 6.0e-132 475.3 482 57.7
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 7.8e-132 474.9 537 53.3
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 4.3e-130 469.2 529 53.9
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 2.1e-129 466.8 465 59.1
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.2e-127 461.1 339 73.2
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 2.0e-127 460.3 531 51.0
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 5.8e-127 458.8 526 52.1
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.3e-126 457.6 525 51.2
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.2e-126 456.8 394 62.4
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 6.4e-126 455.3 551 50.3
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.1e-125 454.5 535 51.6
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.9e-125 453.8 486 53.9
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 7.1e-125 451.8 526 53.4
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.2e-124 451.1 544 49.3
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.6e-124 450.7 524 51.9
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 4.6e-124 449.1 532 51.5
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 6.0e-124 448.7 524 53.4
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 5.1e-123 445.7 563 48.5
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 9.6e-122 441.4 488 54.5
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 4.8e-121 439.1 523 50.5
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 6.9e-120 435.3 372 60.2
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.6e-119 433.3 503 52.9
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.3e-118 431.0 361 64.3
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.4e-117 427.6 322 70.5
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 3.5e-116 422.9 570 47.4
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.3e-115 420.2 503 53.5
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 9.0e-112 408.3 466 52.6
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.5e-111 407.5 345 63.8
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 2.6e-111 406.8 521 48.4
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 4.9e-110 402.5 428 54.4
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 8.4e-110 401.7 527 48.0
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.4e-109 401.0 381 60.4
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 4.2e-109 399.4 474 48.5
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 2.1e-108 397.1 524 45.4
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.8e-107 394.0 346 67.9
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 8.7e-107 391.7 339 63.4
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 2.2e-105 387.1 423 53.9
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.6e-100 370.9 440 53.0
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 1.8e-96 357.5 506 46.8
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 7.4e-90 335.5 403 53.1
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.4e-88 330.5 401 52.4
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 2.7e-84 317.0 327 58.1
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.0e-82 310.8 299 59.2
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 2.6e-82 310.5 428 46.7
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 7.4e-82 308.9 449 44.8
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.0e-79 300.8 187 80.2
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.5e-79 299.7 218 72.5
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 2.9e-78 297.0 396 42.9
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 6.5e-78 295.8 437 41.0
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.1e-72 278.5 316 51.6
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.4e-72 278.1 298 52.3
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 1.6e-71 274.6 323 52.6
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.0e-70 271.9 296 55.7
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 3.4e-66 256.9 500 36.2
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 1.0e-62 245.4 195 64.6
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.5e-61 238.8 278 54.0
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 3.6e-60 236.9 184 66.8
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.4e-59 235.0 287 47.4
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 2.6e-58 230.7 328 43.6
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.7e-57 228.0 290 46.6
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 4.9e-57 226.5 286 45.5
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 8.3e-57 225.7 151 77.5
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 3.1e-56 223.8 307 46.6
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 7.0e-56 222.6 287 45.3
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.6e-55 221.5 167 67.7
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 2.5e-53 214.2 144 72.2
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.5e-53 214.2 289 45.7
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.3e-51 207.6 167 65.3
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 3.1e-51 207.2 167 65.3
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 2.6e-50 204.1 324 40.4
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 4.4e-50 203.4 298 41.9
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 7.5e-50 202.6 324 40.4
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 9.2e-48 195.7 203 59.6
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 6.6e-46 189.5 166 61.4
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 8.6e-46 189.1 291 39.9
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 1.6e-44 184.9 121 74.4
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 4.7e-44 183.3 306 39.5
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.7e-41 174.9 180 52.8
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.9e-40 171.4 170 52.9
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.3e-38 165.2 208 47.6
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.7e-33 148.3 277 36.1
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.6e-31 140.2 115 67.8
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.7e-30 138.3 262 34.0
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 3.9e-30 137.1 146 54.8
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.2e-28 132.1 107 67.3
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 8.9e-27 125.9 375 27.5
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.7e-25 121.7 174 43.7
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 5.4e-24 116.7 200 38.5
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 3.0e-22 110.9 295 33.6
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 2.4e-19 101.3 88 55.7
CSS0036509 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D013495 4.0e-19 100.5 47 97.9
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.7e-17 95.1 63 69.8
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 3.8e-17 94.0 182 32.4
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 1.4e-16 92.0 51 74.5
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 4.2e-16 90.5 67 61.2
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 5.4e-16 90.1 160 36.9
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 7.1e-16 89.7 175 36.0
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 1.2e-15 89.0 213 33.3
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 1.6e-15 88.6 96 54.2
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 1.0e-14 85.9 143 39.9
CSS0013657 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D013495 2.3e-14 84.7 41 87.8
CSS0041920 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D013495 2.3e-14 84.7 41 87.8
CSS0045237 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D013495 2.3e-14 84.7 41 87.8
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.1e-14 83.6 142 39.4
QL05p021244 Quercus lobata HOM05D001353 ORTHO05D029171 5.6e-13 80.1 140 40.0
CSS0015522 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D013495 1.3e-12 79.0 37 89.2
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 7.6e-10 69.7 41 78.0
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 7.1e-08 63.2 41 78.0
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 1.6e-07 62.0 41 68.3
CSS0034571 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D013495 3.9e-06 57.4 34 79.4
SHI11060 Sapria himalayana HOM05D001353 ORTHO05D005187 3.9e-06 57.4 48 64.6


User provided reference genes

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