Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.6e-135 486.1 241 100.0
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 9.0e-51 204.5 152 71.7
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.8e-49 199.1 126 84.1
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.2e-47 194.1 187 59.4
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.2e-47 194.1 187 59.4
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 2.7e-47 193.0 154 65.6
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 1.3e-46 190.7 154 64.9
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 6.7e-46 188.3 197 54.8
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 3.3e-45 186.0 152 63.2
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.3e-45 186.0 140 70.0
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 9.6e-45 184.5 152 64.5
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.6e-44 183.7 152 61.8
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 2.8e-44 183.0 182 53.8
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 4.8e-44 182.2 162 60.5
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 6.3e-44 181.8 150 62.7
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 8.2e-44 181.4 141 65.2
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.1e-43 181.0 152 65.1
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.1e-43 181.0 152 63.2
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.4e-43 180.6 151 61.6
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 1.4e-43 180.6 151 61.6
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.4e-43 179.9 164 59.1
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 3.1e-43 179.5 143 63.6
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 3.1e-43 179.5 148 62.2
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 6.9e-43 178.3 151 63.6
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.2e-42 177.6 150 60.7
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 1.5e-42 177.2 154 60.4
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 2.0e-42 176.8 147 63.9
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.0e-42 176.8 166 57.8
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 3.4e-42 176.0 151 60.3
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 3.4e-42 176.0 142 63.4
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 3.4e-42 176.0 196 52.0
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.4e-42 176.0 153 62.1
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 3.4e-42 176.0 145 62.8
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 5.9e-42 175.3 204 50.5
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.0e-41 174.5 152 60.5
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 1.0e-41 174.5 152 60.5
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.3e-41 174.1 189 50.3
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 2.2e-41 173.3 163 58.9
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 2.2e-41 173.3 180 53.3
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.2e-41 173.3 164 57.3
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 2.2e-41 173.3 214 49.1
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 3.8e-41 172.6 148 59.5
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.4e-40 170.6 150 59.3
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 4.2e-40 169.1 142 60.6
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 5.5e-40 168.7 148 59.5
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 9.3e-40 167.9 149 58.4
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.2e-39 167.5 209 45.5
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.2e-39 167.5 209 45.5
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.2e-39 167.5 149 59.1
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.2e-39 167.5 152 58.6
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 1.2e-39 167.5 149 59.1
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 1.6e-39 167.2 146 56.8
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.1e-39 166.8 198 49.0
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.7e-39 166.4 213 44.1
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 2.7e-39 166.4 192 52.1
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 3.6e-39 166.0 149 59.7
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 6.1e-39 165.2 154 53.9
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.0e-38 164.5 185 48.1
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.0e-38 164.5 184 48.4
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.0e-38 164.5 198 48.5
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 1.3e-38 164.1 146 55.5
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.3e-38 164.1 150 55.3
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.8e-38 163.7 150 57.3
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 3.9e-38 162.5 154 54.5
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 3.9e-38 162.5 156 57.1
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 8.7e-38 161.4 158 54.4
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 8.7e-38 161.4 158 53.8
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 1.1e-37 161.0 154 55.8
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.1e-37 161.0 152 54.6
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.5e-37 160.6 184 47.8
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 1.5e-37 160.6 184 47.8
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.9e-37 160.2 159 54.1
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 1.9e-37 160.2 211 44.5
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 3.3e-37 159.5 143 58.0
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 5.7e-37 158.7 209 44.0
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 7.4e-37 158.3 138 58.0
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 7.4e-37 158.3 148 56.1
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 9.7e-37 157.9 143 58.0
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 9.7e-37 157.9 141 58.2
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 9.7e-37 157.9 158 53.8
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 1.3e-36 157.5 223 40.8
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.6e-36 157.1 182 48.4
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 2.2e-36 156.8 148 54.1
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 4.8e-36 155.6 130 63.1
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 4.8e-36 155.6 130 63.1
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 6.3e-36 155.2 143 54.5
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.8e-35 153.7 185 48.1
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 3.1e-35 152.9 184 48.9
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 1.2e-34 151.0 143 53.1
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 5.0e-33 145.6 151 49.7
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 8.5e-33 144.8 208 42.8
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 4.6e-31 139.0 130 53.8
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 7.9e-31 138.3 159 46.5
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 1.0e-30 137.9 150 48.7
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.3e-30 136.7 215 37.7
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.7e-30 135.2 135 57.8
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 6.9e-27 125.2 124 54.0
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 7.7e-26 121.7 157 41.4
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 2.2e-25 120.2 132 46.2
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.9e-24 117.1 103 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 4.2e-24 115.9 145 40.7
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-23 114.0 151 40.4
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-22 111.3 143 39.9
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 1.4e-22 110.9 143 41.3
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.4e-22 110.9 149 42.3
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-22 110.9 151 39.1
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.1e-19 101.3 184 37.5
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-18 97.4 131 41.2
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.7e-18 95.1 131 39.7
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.7e-18 95.1 131 39.7
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.9e-17 93.2 131 38.9
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.9e-17 93.2 131 38.9
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-16 90.9 131 40.5
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.2e-16 89.7 130 36.9
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.4e-16 88.2 74 51.4
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-15 87.4 85 43.5
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.4e-14 84.3 93 39.8
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 1.2e-13 81.3 151 35.1
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 2.8e-12 76.6 144 34.0
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 1.6e-10 70.9 151 32.5
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 6.1e-07 58.9 162 27.8
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 2.3e-06 57.0 77 39.0


User provided reference genes

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