Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 0.0e+00 2067.0 1036 100.0
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 0.0e+00 2025.8 1038 98.0
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 2.6e-304 1048.9 1068 57.5
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 6.7e-244 848.2 1052 50.8
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 4.8e-242 842.0 1153 45.3
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 3.4e-240 835.9 1107 45.3
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 4.5e-240 835.5 1160 44.6
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.1e-238 830.9 1085 46.7
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 4.1e-233 812.4 1105 45.6
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 2.0e-232 810.1 1118 44.4
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 6.3e-226 788.5 1052 47.7
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 6.9e-225 785.0 1113 44.7
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 9.4e-222 774.6 1076 44.1
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.4e-217 760.8 1113 43.9
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 3.1e-217 759.6 1090 43.9
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 3.2e-214 749.6 1069 43.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.5e-211 740.7 1039 46.5
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.1e-209 734.6 1096 43.1
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.1e-209 734.6 1091 42.9
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.0e-207 728.0 1105 42.4
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 4.2e-206 722.6 1089 41.1
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 4.1e-201 706.1 1091 41.8
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 4.1e-201 706.1 1111 41.5
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 5.4e-201 705.7 1091 42.6
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.9e-198 697.2 1096 41.0
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 6.8e-196 688.7 1082 41.3
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 3.8e-191 672.9 1130 39.8
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.1e-185 654.8 1106 39.8
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 1.3e-178 631.3 582 58.6
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 6.4e-178 629.0 1123 38.1
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 3.9e-175 619.8 1057 40.2
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 4.3e-174 616.3 1079 39.0
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 2.8e-173 613.6 1091 39.8
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.3e-172 610.5 1054 39.6
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.5e-171 607.8 1109 38.5
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 6.4e-170 602.4 1182 37.1
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 8.3e-170 602.1 1111 38.3
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 7.1e-169 599.0 1118 38.0
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.8e-168 595.5 1089 38.2
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 6.6e-167 592.4 1085 38.3
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.5e-166 590.5 1105 37.7
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.6e-165 587.8 1095 37.1
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 8.9e-164 582.0 1089 38.4
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 1.3e-162 578.2 1086 38.6
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 8.4e-162 575.5 1168 37.0
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.3e-159 568.2 683 52.0
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.3e-159 568.2 1115 37.0
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 3.9e-159 566.6 1036 38.2
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.1e-156 558.5 1108 36.1
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 8.9e-156 555.4 1197 34.8
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 2.2e-154 550.8 1106 35.6
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 6.0e-152 542.7 1075 36.3
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 3.1e-148 530.4 1116 33.7
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.6e-147 527.3 881 39.0
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 3.8e-146 523.5 1096 34.8
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 4.9e-146 523.1 1088 35.1
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.4e-146 522.3 1081 36.4
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 1.1e-145 521.9 1088 35.1
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.9e-145 521.2 1049 36.8
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 2.7e-144 517.3 1054 37.1
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.1e-143 513.1 1053 36.8
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 1.9e-142 511.1 1089 34.6
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.3e-141 508.4 1112 34.5
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.6e-141 508.1 1081 36.7
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 1.2e-139 501.9 1121 33.9
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 4.5e-139 500.0 1064 34.3
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 4.9e-138 496.5 1117 34.3
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 1.9e-137 494.6 1094 36.2
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 2.4e-137 494.2 888 38.6
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 4.2e-137 493.4 1068 34.5
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 6.2e-133 479.6 1167 32.6
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 8.4e-130 469.2 932 36.7
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 3.5e-128 463.8 1047 33.6
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 6.0e-128 463.0 1063 32.8
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 7.9e-128 462.6 994 35.7
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 7.9e-128 462.6 1066 32.1
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 8.2e-117 426.0 1077 32.1
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 3.9e-111 407.1 1087 30.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.3e-106 392.1 1072 31.3
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 1.7e-101 375.2 525 47.0
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.2e-101 372.9 879 33.9
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 3.1e-100 370.9 1061 32.0
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.0e-99 368.2 578 43.4
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 7.5e-94 349.7 547 40.8
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 7.5e-94 349.7 1042 31.3
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 5.9e-91 340.1 1062 30.9
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 3.8e-90 337.4 1040 30.2
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.1e-88 331.6 805 33.2
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 4.8e-85 320.5 755 34.2
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 6.3e-85 320.1 1013 30.0
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 8.3e-85 319.7 1013 30.0
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 4.1e-84 317.4 750 32.9
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 4.1e-84 317.4 750 32.9
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 4.1e-84 317.4 750 32.9
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 8.5e-82 309.7 736 32.3
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.2e-81 307.8 314 53.2
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.4e-76 292.4 1100 27.8
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 4.5e-75 287.3 248 60.1
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 2.8e-72 278.1 702 32.5
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 1.0e-71 276.2 662 35.2
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 1.4e-71 275.8 784 31.8
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.8e-71 275.4 523 36.3
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 9.2e-68 263.1 949 27.8
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 3.3e-65 254.6 1050 29.3
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 1.2e-64 252.7 774 31.4
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.1e-64 251.9 1010 30.0
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.9e-60 238.8 500 35.0
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 4.7e-56 224.2 389 37.0
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 3.4e-54 218.0 778 28.5
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 5.8e-54 217.2 788 29.7
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.7e-53 215.7 764 29.2
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 2.9e-53 214.9 771 28.1
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 5.6e-49 200.7 288 38.9
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.1e-48 198.7 1047 25.4
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 2.8e-48 198.4 855 27.0
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.5e-43 181.4 741 26.9
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.0e-42 179.9 309 35.9
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 3.9e-42 177.9 214 47.7
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 3.9e-42 177.9 727 26.0
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.3e-41 174.5 170 53.5
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 3.4e-38 164.9 169 50.3
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.9e-37 161.8 151 55.0
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 4.9e-37 161.0 178 50.6
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 5.4e-36 157.5 556 28.8
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 5.1e-34 151.0 150 50.0
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 5.3e-31 141.0 157 50.3
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 9.0e-31 140.2 344 27.9
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 4.5e-30 137.9 113 58.4
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.1e-27 129.0 428 28.3
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 8.7e-26 123.6 129 50.4
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.6e-24 119.4 167 40.1
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 2.4e-20 105.5 764 23.6
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 2.4e-20 105.5 418 30.1
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 3.2e-20 105.1 178 44.4
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 5.5e-20 104.4 1011 23.8
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 7.1e-20 104.0 308 31.8
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.6e-19 102.8 287 29.3
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.6e-19 101.3 754 23.2
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.1e-17 96.7 480 27.5
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.3e-16 93.2 109 41.3
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.3e-16 93.2 84 50.0
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 9.0e-15 87.0 97 43.3
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.0e-14 85.9 80 51.2
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 1.9e-09 69.3 227 30.0
Glyma.20G205250 Glycine max HOM05D005259 ORTHO05D006402 9.6e-09 67.0 136 30.9


User provided reference genes

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