Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 0.0e+00 1356.7 709 100.0
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 0.0e+00 1344.7 709 99.6
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 0.0e+00 1087.8 710 79.0
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.5e-299 1030.4 698 79.4
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 2.2e-286 988.8 709 74.3
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 7.5e-279 963.8 711 71.0
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.2e-278 962.2 709 70.9
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 1.1e-277 959.9 695 74.1
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.5e-274 949.5 717 71.8
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 4.4e-271 937.9 712 72.6
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.6e-265 919.5 711 69.6
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 6.3e-262 907.5 712 68.3
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 7.0e-261 904.0 712 67.4
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 2.7e-260 902.1 711 67.2
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 6.6e-259 897.5 719 67.5
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 6.1e-257 891.0 729 66.5
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 6.8e-256 887.5 709 66.6
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 4.1e-253 878.2 711 65.1
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 5.4e-253 877.9 712 67.1
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.0e-251 873.6 713 65.8
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 8.6e-251 870.5 728 65.1
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 9.8e-247 857.1 713 65.4
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 2.9e-246 855.5 710 64.6
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.1e-244 849.4 712 64.3
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 4.6e-244 848.2 713 64.5
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.0e-243 847.0 713 65.5
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.0e-243 847.0 713 64.4
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.1e-243 844.7 713 64.8
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 6.6e-243 844.3 708 64.8
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 1.5e-242 843.2 710 64.1
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.3e-242 840.9 713 64.8
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 2.1e-241 839.3 713 64.1
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 4.0e-240 835.1 709 63.9
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 2.6e-239 832.4 715 63.9
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 4.4e-239 831.6 711 64.0
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 6.4e-238 827.8 720 63.5
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 8.3e-238 827.4 698 64.5
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.1e-237 827.0 706 63.5
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.4e-237 824.7 708 62.9
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.4e-237 824.7 706 63.5
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 2.7e-236 822.4 715 63.4
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 3.5e-236 822.0 711 63.4
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.6e-236 821.6 705 64.1
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 6.6e-235 817.8 729 62.4
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 1.5e-234 816.6 697 63.0
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 2.6e-231 805.8 736 60.9
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 4.4e-231 805.1 702 61.7
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 9.9e-231 803.9 710 61.4
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.3e-230 803.5 713 62.3
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 1.1e-229 800.4 712 61.1
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 7.1e-229 797.7 711 60.5
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 1.2e-228 797.0 709 61.6
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.2e-228 797.0 714 61.2
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 2.7e-228 795.8 712 60.8
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 5.1e-227 791.6 717 60.7
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 1.5e-226 790.0 715 60.6
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 4.3e-226 788.5 714 61.2
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 7.3e-226 787.7 713 61.2
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 2.8e-225 785.8 709 60.5
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 4.7e-225 785.0 714 62.7
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.7e-225 785.0 712 61.5
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 8.1e-225 784.3 724 61.0
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 1.4e-224 783.5 726 60.7
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 2.4e-224 782.7 709 59.7
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 9.0e-224 780.8 712 60.4
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 5.8e-223 778.1 710 61.7
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 9.9e-223 777.3 710 60.3
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.9e-221 773.1 712 60.8
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.7e-220 769.2 711 60.2
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 2.3e-219 766.1 717 59.8
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 6.6e-219 764.6 715 59.3
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.3e-218 761.9 711 60.1
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 4.3e-218 761.9 723 59.5
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 7.3e-218 761.1 866 51.6
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 2.8e-217 759.2 712 59.1
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 1.2e-215 753.8 723 58.9
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 1.5e-215 753.4 725 58.3
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 2.6e-215 752.7 710 59.4
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 4.5e-215 751.9 710 59.6
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 2.9e-214 749.2 723 58.8
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 3.8e-214 748.8 715 59.9
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 9.3e-213 744.2 711 58.5
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 1.6e-209 733.4 726 60.6
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 2.8e-209 732.6 710 57.6
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 8.1e-209 731.1 716 59.8
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 9.9e-207 724.2 717 57.5
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 2.5e-205 719.5 718 59.5
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 3.0e-203 712.6 719 58.7
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 5.1e-203 711.8 712 57.4
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 1.9e-202 709.9 717 57.5
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 2.5e-202 709.5 720 57.4
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 3.3e-202 709.1 717 57.6
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 9.6e-202 707.6 719 57.7
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 9.6e-202 707.6 714 56.7
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.1e-201 706.4 745 54.5
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.4e-200 703.7 714 55.3
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 6.9e-200 701.4 722 56.1
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 2.6e-199 699.5 717 56.8
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 4.5e-199 698.7 702 57.8
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 4.5e-199 698.7 710 56.6
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 1.9e-197 693.3 716 57.3
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 4.2e-197 692.2 717 57.6
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 4.2e-197 692.2 717 56.9
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 9.3e-197 691.0 715 56.9
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 9.3e-197 691.0 715 56.9
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 1.2e-196 690.6 715 56.8
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 6.0e-196 688.3 714 57.0
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 7.9e-196 688.0 717 56.8
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 3.9e-195 685.6 714 56.3
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 6.7e-195 684.9 713 56.5
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 5.5e-189 665.2 721 55.9
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 2.3e-187 659.8 730 54.2
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 6.7e-187 658.3 707 54.6
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 5.9e-183 645.2 701 55.6
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.7e-182 643.7 722 55.0
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 6.1e-180 635.2 647 57.0
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 7.2e-173 611.7 716 50.3
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.0e-171 607.8 717 50.1
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 1.5e-170 604.0 697 52.1
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 4.8e-169 599.0 715 50.8
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 4.7e-164 582.4 713 50.8
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 2.2e-161 573.5 715 50.2
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.2e-154 551.2 384 75.0
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 9.8e-154 548.1 739 48.3
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.5e-149 534.3 697 49.2
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 3.3e-149 533.1 552 55.1
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 7.2e-149 531.9 321 86.6
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 8.3e-145 518.5 375 71.5
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 8.3e-145 518.5 375 71.5
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 3.3e-141 506.5 608 49.7
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.1e-140 503.8 373 72.9
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 2.9e-137 493.4 738 43.6
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 1.0e-126 458.4 319 76.2
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 3.8e-113 413.3 393 57.5
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.9e-112 411.0 496 49.8
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 2.7e-111 407.1 339 67.0
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 4.2e-104 383.3 394 54.6
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.1e-103 380.9 348 60.9
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 4.2e-96 356.7 746 37.5
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 3.0e-94 350.5 747 37.6
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 1.5e-93 348.2 539 40.8
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.7e-92 343.6 634 38.8
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 7.6e-90 335.9 776 34.7
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 9.3e-88 328.9 392 48.7
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.2e-76 291.2 412 49.3
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 1.9e-64 251.5 339 47.8
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 2.2e-57 228.0 492 35.6
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.2e-56 223.8 431 39.2
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.0e-54 217.6 151 77.5
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 3.7e-52 210.7 444 35.6
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 2.3e-46 191.4 263 45.6
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 7.0e-43 179.9 164 62.8
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.2e-39 169.1 152 54.6
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 1.8e-38 165.2 235 42.6
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.5e-34 151.0 160 55.0
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 9.2e-27 126.3 69 89.9
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 7.8e-26 123.2 69 85.5
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.3e-25 122.5 389 28.0
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 6.8e-22 110.2 362 28.7
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.6e-21 108.2 74 73.0
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 9.8e-21 106.3 57 93.0
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 3.7e-20 104.4 493 25.6
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.2e-18 99.4 81 55.6
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 5.0e-17 94.0 59 78.0
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 4.3e-16 90.9 59 76.3
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 1.1e-14 86.3 56 78.6
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.6e-13 81.6 87 48.3
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 3.4e-13 81.3 101 51.5
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 7.5e-13 80.1 87 48.3
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 3.7e-12 77.8 424 27.6
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 6.6e-09 67.0 51 62.7
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 1.1e-06 59.7 382 21.5


User provided reference genes

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