Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043109 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 1.4e-87 326.2 166 100.0
CSS0017980 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 8.6e-85 317.0 166 97.6
CSS0030096 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 6.4e-72 274.2 155 91.0
CSS0001527 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 1.1e-71 273.5 152 92.1
Actinidia08978 Actinidia chinensis HOM05D001537 ORTHO05D002595 4.3e-44 181.8 160 62.5
Rhsim08G0221300 Rhododendron simsii HOM05D001537 ORTHO05D002595 2.2e-40 169.5 158 61.4
vmacro18913 Vaccinium macrocarpon HOM05D001537 ORTHO05D002595 3.2e-39 165.6 158 59.5
Dinv30509 Davidia involucrata HOM05D001537 ORTHO05D002595 8.4e-32 141.0 164 53.7
Hma1.2p1_0092F.1_g046630 Hydrangea macrophylla HOM05D001537 ORTHO05D013980 5.0e-24 115.2 162 48.1
Lj5A60G62 Lonicera japonica HOM05D001537 ORTHO05D013980 1.1e-23 114.0 159 40.3
Atru.chr1.3271 Acer truncatum HOM05D001537 ORTHO05D002595 3.3e-20 102.4 165 42.4
TWI12G1035 Tripterygium wilfordii HOM05D001537 ORTHO05D002595 4.3e-20 102.1 166 43.4
GSVIVG01017107001 Vitis vinifera HOM05D001537 ORTHO05D013980 5.7e-20 101.7 165 40.6
Potri.001G180200 Populus trichocarpa HOM05D001537 ORTHO05D002595 9.7e-20 100.9 163 40.5
Ciclev10024801m.g Citrus clementina HOM05D001537 ORTHO05D002595 1.1e-18 97.4 159 46.5
TAR636G3516 Trochodendron aralioides HOM05D001537 ORTHO05D002595 1.8e-18 96.7 177 41.2
Cfa002066 Carpinus fangiana HOM05D001537 ORTHO05D002595 5.3e-18 95.1 166 44.0
QL05p024197 Quercus lobata HOM05D001537 ORTHO05D002595 6.9e-18 94.7 167 41.3
Haze_16429 Corylus avellana HOM05D001537 ORTHO05D002595 1.5e-17 93.6 166 43.4
MD17G1195000 Malus domestica HOM05D001537 ORTHO05D002595 1.5e-17 93.6 161 39.1
CiPaw.01G239300 Carya illinoinensis HOM05D001537 ORTHO05D002595 4.2e-15 85.5 165 40.0
Manes.11G047500 Manihot esculenta HOM05D001537 ORTHO05D002595 1.6e-14 83.6 165 38.8
Prupe.3G071000 Prunus persica HOM05D001537 ORTHO05D002595 4.6e-14 82.0 166 36.7
CAN.G438.67 Capsicum annuum HOM05D001537 ORTHO05D002595 6.1e-14 81.6 157 36.9
RcHm_v2.0_Chr2g0137871 Rosa chinensis HOM05D001537 ORTHO05D002595 1.5e-12 77.0 166 35.5
Nitab4.5_0000671g0080 Nicotiana tabacum HOM05D001537 ORTHO05D002595 2.8e-11 72.8 164 32.9
Eucgr.F03013 Eucalyptus grandis HOM05D001537 ORTHO05D002595 6.3e-11 71.6 160 35.6
Solyc03g120200.2 Solanum lycopersicum HOM05D001537 ORTHO05D002595 1.1e-10 70.9 157 32.5
Duzib235G1517 Durio zibethinus HOM05D001537 ORTHO05D002595 1.4e-10 70.5 165 35.8
Thecc.06G087400 Theobroma cacao HOM05D001537 ORTHO05D002595 3.1e-10 69.3 162 36.4
Sopen03g039070 Solanum pennellii HOM05D001537 ORTHO05D002595 5.3e-10 68.6 157 32.5
COL.COLO4_30371 Corchorus olitorius HOM05D001537 ORTHO05D002595 6.9e-10 68.2 162 36.4
QL05p024080 Quercus lobata HOM05D001537 ORTHO05D013980 1.5e-09 67.0 166 31.9
QL05p023971 Quercus lobata HOM05D000071 ORTHO05D000029 4.5e-09 65.5 159 32.1
Sc21g0005110 Simmondsia chinensis HOM05D001537 ORTHO05D002595 7.7e-09 64.7 161 31.1
ClCG09G002140 Citrullus lanatus HOM05D001537 ORTHO05D002595 3.8e-08 62.4 165 32.1
Cc04_g03430 Coffea canephora HOM05D001537 ORTHO05D002595 5.0e-08 62.0 130 35.4
Nn8g39217 Nelumbo nucifera HOM05D001537 ORTHO05D002595 6.5e-08 61.6 164 36.0
EL10Ac9g22000 Beta vulgaris HOM05D001537 ORTHO05D002595 1.2e-06 57.4 161 28.6
FvH4_6g31180 Fragaria vesca HOM05D001537 ORTHO05D002595 2.1e-06 56.6 179 30.7
FAN14G4499 Fragaria x ananassa HOM05D001537 ORTHO05D002595 2.1e-06 56.6 179 30.7
PGR102G0923 Punica granatum HOM05D001537 ORTHO05D002595 2.1e-06 56.6 158 29.7
MSTRG.11077 Avicennia marina HOM05D001537 ORTHO05D002595 3.6e-06 55.8 162 31.5


User provided reference genes

Program Settings