Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042816 Camellia sinensis var. sinensis HOM05D002224 ORTHO05D043348 6.6e-41 170.2 85 100.0
Dinv44647 Davidia involucrata HOM05D002224 ORTHO05D002446 2.4e-22 108.6 61 85.2
Dinv29900 Davidia involucrata HOM05D002224 ORTHO05D002446 4.5e-21 104.4 61 82.0
DCAR_002340 Daucus carota HOM05D002224 ORTHO05D002446 1.3e-20 102.8 72 69.4
DCAR_018517 Daucus carota HOM05D002224 ORTHO05D043348 2.2e-20 102.1 63 77.8
CSS0035478 Camellia sinensis var. sinensis HOM05D002224 ORTHO05D002446 6.5e-20 100.5 61 77.0
Lj3A795G23 Lonicera japonica HOM05D002224 ORTHO05D002446 1.1e-19 99.8 61 82.0
CiPaw.02G115800 Carya illinoinensis HOM05D002224 ORTHO05D002446 2.5e-19 98.6 62 82.3
Lj6C657T15 Lonicera japonica HOM05D002224 ORTHO05D002446 3.2e-19 98.2 61 75.4
Haze_11315 Corylus avellana HOM05D002224 ORTHO05D002446 7.1e-19 97.1 65 78.5
Haze_11317 Corylus avellana HOM05D002224 ORTHO05D002446 7.1e-19 97.1 65 78.5
vmacro08439 Vaccinium macrocarpon HOM05D002224 ORTHO05D002446 1.6e-18 95.9 61 78.7
Nitab4.5_0005738g0010 Nicotiana tabacum HOM05D002224 ORTHO05D002446 2.7e-18 95.1 61 73.8
Nitab4.5_0008399g0010 Nicotiana tabacum HOM05D002224 ORTHO05D002446 2.7e-18 95.1 61 73.8
Rhsim04G0189200 Rhododendron simsii HOM05D002224 ORTHO05D002446 2.7e-18 95.1 65 73.8
CAN.G638.71 Capsicum annuum HOM05D002224 ORTHO05D002446 4.6e-18 94.4 61 73.8
Ciclev10004192m.g Citrus clementina HOM05D002224 ORTHO05D002446 4.6e-18 94.4 59 83.1
COL.COLO4_15805 Corchorus olitorius HOM05D002224 ORTHO05D002446 6.0e-18 94.0 61 80.3
Thecc.04G247700 Theobroma cacao HOM05D002224 ORTHO05D002446 6.0e-18 94.0 61 80.3
Atru.chr4.2182 Acer truncatum HOM05D002224 ORTHO05D002446 1.0e-17 93.2 59 81.4
Manes.03G168200 Manihot esculenta HOM05D002224 ORTHO05D002446 1.8e-17 92.4 61 77.0
Lj6g0016969 Lotus japonicus HOM05D002224 ORTHO05D002446 2.3e-17 92.0 59 79.7
TAR636G2710 Trochodendron aralioides HOM05D002224 ORTHO05D002446 2.3e-17 92.0 61 77.0
Lalb_Chr19g0128431 Lupinus albus HOM05D002224 ORTHO05D002446 3.0e-17 91.7 59 79.7
GSVIVG01018133001 Vitis vinifera HOM05D002224 ORTHO05D002446 3.0e-17 91.7 61 77.0
Lalb_Chr03g0037041 Lupinus albus HOM05D002224 ORTHO05D002446 3.9e-17 91.3 59 78.0
Manes.15G037500 Manihot esculenta HOM05D002224 ORTHO05D002446 5.1e-17 90.9 61 77.0
TWI09G1092 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 5.1e-17 90.9 59 76.3
Glyma.10G188600 Glycine max HOM05D002224 ORTHO05D002446 6.7e-17 90.5 59 76.3
Nn1g02667 Nelumbo nucifera HOM05D002224 ORTHO05D002446 6.7e-17 90.5 61 73.8
Sabra08G0124600 Salix brachista HOM05D002224 ORTHO05D002446 6.7e-17 90.5 61 75.4
Duzib052G0858 Durio zibethinus HOM05D002224 ORTHO05D002446 8.7e-17 90.1 61 78.7
Potri.008G163300 Populus trichocarpa HOM05D002224 ORTHO05D002446 8.7e-17 90.1 61 77.0
TAR633G1794 Trochodendron aralioides HOM05D002224 ORTHO05D002446 8.7e-17 90.1 62 75.8
Glyma.20G202100 Glycine max HOM05D002224 ORTHO05D002446 1.1e-16 89.7 59 76.3
vmacro15416 Vaccinium macrocarpon HOM05D002224 ORTHO05D002446 1.1e-16 89.7 61 73.8
MSTRG.21894 Avicennia marina HOM05D002224 ORTHO05D002446 1.5e-16 89.4 64 70.3
MSTRG.24697 Avicennia marina HOM05D002224 ORTHO05D002446 1.5e-16 89.4 61 72.1
Lalb_Chr21g0312421 Lupinus albus HOM05D002224 ORTHO05D002446 1.5e-16 89.4 62 71.0
Potri.010G075000 Populus trichocarpa HOM05D002224 ORTHO05D002446 1.5e-16 89.4 61 75.4
Duzib212G0982 Durio zibethinus HOM05D002224 ORTHO05D002446 1.9e-16 89.0 61 77.0
Lsat_1_v5_gn_3_122660 Lactuca sativa HOM05D002224 ORTHO05D002446 1.9e-16 89.0 61 72.1
Lj5g0007272 Lotus japonicus HOM05D002224 ORTHO05D002446 1.9e-16 89.0 61 73.8
QL06p015938 Quercus lobata HOM05D002224 ORTHO05D002446 1.9e-16 89.0 61 77.0
Actinidia05458 Actinidia chinensis HOM05D002224 ORTHO05D002446 2.5e-16 88.6 61 70.5
Cpa.g.sc44.110 Carica papaya HOM05D002224 ORTHO05D002446 3.3e-16 88.2 61 73.8
Cc03_g04990 Coffea canephora HOM05D002224 ORTHO05D002446 3.3e-16 88.2 61 68.9
FAN22G0018 Fragaria x ananassa HOM05D002224 ORTHO05D002446 3.3e-16 88.2 61 75.4
HanXRQChr03g0092341 Helianthus annuus HOM05D002224 ORTHO05D002446 3.3e-16 88.2 63 71.4
PSO210G1885 Papaver somniferum HOM05D002224 ORTHO05D002446 4.3e-16 87.8 62 71.0
PSO832G3587 Papaver somniferum HOM05D002224 ORTHO05D002446 4.3e-16 87.8 62 71.0
Glyma.10G008700 Glycine max HOM05D002224 ORTHO05D002446 5.7e-16 87.4 59 76.3
Solyc03g005430.4 Solanum lycopersicum HOM05D002224 ORTHO05D002446 5.7e-16 87.4 61 68.9
Sopen03g001460 Solanum pennellii HOM05D002224 ORTHO05D002446 5.7e-16 87.4 61 68.9
Prupe.1G033200 Prunus persica HOM05D002224 ORTHO05D002446 7.4e-16 87.0 61 75.4
Sabra10G0033800 Salix brachista HOM05D002224 ORTHO05D002446 7.4e-16 87.0 61 73.8
Peaxi162Scf00024g00053 Petunia axillaris HOM05D002224 ORTHO05D002446 9.7e-16 86.7 61 70.5
DCAR_027286 Daucus carota HOM05D002224 ORTHO05D002446 1.3e-15 86.3 64 70.3
Rhsim02G0034400 Rhododendron simsii HOM05D002224 ORTHO05D002446 1.3e-15 86.3 61 72.1
Sopen06g018860 Solanum pennellii HOM05D002224 ORTHO05D002446 1.3e-15 86.3 61 65.6
DCAR_030729 Daucus carota HOM05D002224 ORTHO05D002446 2.2e-15 85.5 59 72.9
ECA240G1645 Erigeron canadensis HOM05D002224 ORTHO05D002446 2.2e-15 85.5 61 70.5
FvH4_4g02970 Fragaria vesca HOM05D002224 ORTHO05D002446 2.2e-15 85.5 61 73.8
FAN12G0222 Fragaria x ananassa HOM05D002224 ORTHO05D002446 2.2e-15 85.5 61 73.8
FAN17G0240 Fragaria x ananassa HOM05D002224 ORTHO05D002446 2.2e-15 85.5 61 73.8
RcHm_v2.0_Chr4g0391041 Rosa chinensis HOM05D002224 ORTHO05D002446 2.2e-15 85.5 61 73.8
Sopen09g032480 Solanum pennellii HOM05D002224 ORTHO05D002446 2.2e-15 85.5 61 67.2
CAN.G1007.9 Capsicum annuum HOM05D002224 ORTHO05D002446 2.8e-15 85.1 61 67.2
Glyma.20G086700 Glycine max HOM05D002224 ORTHO05D002446 2.8e-15 85.1 59 74.6
Gohir.A10G113500 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.7e-15 84.7 58 74.1
Gohir.D10G153900 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.7e-15 84.7 58 74.1
MD13G1209100 Malus domestica HOM05D002224 ORTHO05D002446 3.7e-15 84.7 61 73.8
Sp1g03110 Schrenkiella parvula HOM05D002224 ORTHO05D002446 3.7e-15 84.7 62 72.6
Ca_11941_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 4.8e-15 84.3 61 72.1
Gorai.011G171900 Gossypium raimondii HOM05D002224 ORTHO05D002446 4.8e-15 84.3 58 74.1
MD16G1211000 Malus domestica HOM05D002224 ORTHO05D002446 6.3e-15 84.0 61 73.8
Solyc06g053750.3 Solanum lycopersicum HOM05D002224 ORTHO05D002446 6.3e-15 84.0 61 63.9
arahy.Tifrunner.gnm1.ann1.P060ZG Arachis hypogaea HOM05D002224 ORTHO05D002446 8.2e-15 83.6 61 70.5
arahy.Tifrunner.gnm1.ann1.V2K6XN Arachis hypogaea HOM05D002224 ORTHO05D002446 8.2e-15 83.6 61 70.5
Nitab4.5_0003331g0070 Nicotiana tabacum HOM05D002224 ORTHO05D002446 8.2e-15 83.6 60 70.0
HanXRQChr13g0424301 Helianthus annuus HOM05D002224 ORTHO05D002446 1.1e-14 83.2 59 71.2
Solyc09g089560.4 Solanum lycopersicum HOM05D002224 ORTHO05D002446 1.1e-14 83.2 61 65.6
VMungo0720G0464 Vigna mungo HOM05D002224 ORTHO05D002446 1.4e-14 82.8 59 71.2
CANSAT78G0691 Cannabis sativa HOM05D002224 ORTHO05D002446 1.8e-14 82.4 61 73.8
Duzib052G0795 Durio zibethinus HOM05D002224 ORTHO05D002446 1.8e-14 82.4 57 77.2
Migut.G00445 Erythranthe guttata HOM05D002224 ORTHO05D002446 2.4e-14 82.0 61 70.5
VMungo0720G3056 Vigna mungo HOM05D002224 ORTHO05D002446 3.1e-14 81.6 59 69.5
AT1G04300 Arabidopsis thaliana HOM05D002224 ORTHO05D002446 4.1e-14 81.3 62 69.4
Gorai.005G047400 Gossypium raimondii HOM05D002224 ORTHO05D002446 4.1e-14 81.3 62 67.7
Nitab4.5_0000436g0070 Nicotiana tabacum HOM05D002224 ORTHO05D002446 4.1e-14 81.3 60 68.3
Psat6g107120 Pisum sativum HOM05D002224 ORTHO05D002446 4.1e-14 81.3 59 71.2
SalBow2G1285 Salvia bowleyana HOM05D002224 ORTHO05D002446 4.1e-14 81.3 64 65.6
SalBow3G3388 Salvia bowleyana HOM05D002224 ORTHO05D002446 4.1e-14 81.3 55 72.7
TPR.G739 Trifolium pratense HOM05D002224 ORTHO05D002446 4.1e-14 81.3 59 71.2
Oeu002596.1 Olea europaea HOM05D002224 ORTHO05D002446 5.3e-14 80.9 62 67.7
Sc13g0005120 Simmondsia chinensis HOM05D002224 ORTHO05D002446 6.9e-14 80.5 61 70.5
TAR365G0712 Trochodendron aralioides HOM05D002224 ORTHO05D002446 9.0e-14 80.1 61 70.5
Ca_11949_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 1.2e-13 79.7 61 67.2
Ca_30398_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 1.2e-13 79.7 61 67.2
Gohir.A02G036400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 1.5e-13 79.3 59 67.8
Sc25g0004120 Simmondsia chinensis HOM05D002224 ORTHO05D002446 1.5e-13 79.3 56 75.0
Gohir.A01G024400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 2.0e-13 79.0 62 69.4
Psat6g132600 Pisum sativum HOM05D002224 ORTHO05D002446 2.0e-13 79.0 58 72.4
Hund04557 Selenicereus undatus HOM05D002224 ORTHO05D002446 2.6e-13 78.6 61 67.2
Gohir.A09G223700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.4e-13 78.2 61 68.9
Gohir.D09G225700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.4e-13 78.2 61 68.9
Gorai.006G247200 Gossypium raimondii HOM05D002224 ORTHO05D002446 3.4e-13 78.2 61 68.9
Sp2g08380 Schrenkiella parvula HOM05D002224 ORTHO05D002446 3.4e-13 78.2 61 67.2
AT5G43560 Arabidopsis thaliana HOM05D002224 ORTHO05D002446 4.5e-13 77.8 61 63.9
CARHR003630 Cardamine hirsuta HOM05D002224 ORTHO05D002446 7.7e-13 77.0 62 61.3
Phvul.007G271500 Phaseolus vulgaris HOM05D002224 ORTHO05D002446 7.7e-13 77.0 59 64.4
Psat6g140440 Pisum sativum HOM05D002224 ORTHO05D002446 7.7e-13 77.0 58 70.7
Aqoxy5G00291 Aquilegia oxysepala HOM05D002224 ORTHO05D002446 1.0e-12 76.6 59 66.1
Gohir.D01G022400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 1.3e-12 76.3 62 67.7
Gorai.002G024900 Gossypium raimondii HOM05D002224 ORTHO05D002446 1.3e-12 76.3 62 67.7
TPR.G26447 Trifolium pratense HOM05D002224 ORTHO05D002446 1.3e-12 76.3 58 69.0
MBI11_g40184_MAGBIO Magnolia biondii HOM05D002224 ORTHO05D002446 1.7e-12 75.9 59 64.4
CARHR180040 Cardamine hirsuta HOM05D002224 ORTHO05D002446 2.2e-12 75.5 62 64.5
Peaxi162Scf00019g00284 Petunia axillaris HOM05D002224 ORTHO05D002446 2.2e-12 75.5 63 65.1
TWI73G0813 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 2.2e-12 75.5 58 70.7
AUR62002254 Chenopodium quinoa HOM05D002224 ORTHO05D002446 2.9e-12 75.1 61 63.9
Actinidia04471 Actinidia chinensis HOM05D002224 ORTHO05D002446 3.8e-12 74.7 61 62.3
Hund11858 Selenicereus undatus HOM05D002224 ORTHO05D002446 3.8e-12 74.7 61 60.7
TAR362G0167 Trochodendron aralioides HOM05D002224 ORTHO05D002446 3.8e-12 74.7 62 66.1
BcaC07g42175 Brassica carinata HOM05D002224 ORTHO05D002446 5.0e-12 74.3 70 60.0
A09p67930 Brassica napus HOM05D002224 ORTHO05D002446 5.0e-12 74.3 70 60.0
C08p52350 Brassica napus HOM05D002224 ORTHO05D002446 5.0e-12 74.3 70 60.0
Aa31LG5G3630 Aethionema arabicum HOM05D002224 ORTHO05D002446 8.5e-12 73.6 59 64.4
EL10Ac3g05897 Beta vulgaris HOM05D002224 ORTHO05D002446 1.1e-11 73.2 61 60.7
BolC8t52764H Brassica oleracea HOM05D002224 ORTHO05D002446 1.1e-11 73.2 61 63.9
Oeu058878.1 Olea europaea HOM05D002224 ORTHO05D002446 1.4e-11 72.8 58 63.8
PGR004G2419 Punica granatum HOM05D002224 ORTHO05D002446 1.4e-11 72.8 61 63.9
SGA_v2.0_scaffold308G48105 Striga asiatica HOM05D002224 ORTHO05D002446 1.4e-11 72.8 59 62.7
AUR62015466 Chenopodium quinoa HOM05D002224 ORTHO05D002446 1.9e-11 72.4 61 62.3
Medtr1g044450 Medicago truncatula HOM05D002224 ORTHO05D002446 1.9e-11 72.4 59 66.1
SGA_v2.0_scaffold79G25653 Striga asiatica HOM05D002224 ORTHO05D002446 2.5e-11 72.0 60 63.3
AL1G13900 Arabidopsis lyrata HOM05D002224 ORTHO05D002446 3.2e-11 71.6 55 69.1
AL8G16740 Arabidopsis lyrata HOM05D002224 ORTHO05D002446 3.2e-11 71.6 59 59.3
BraA09t42128Z Brassica rapa HOM05D002224 ORTHO05D002446 3.2e-11 71.6 61 62.3
Sed0000078 Sechium edule HOM05D002224 ORTHO05D002446 3.2e-11 71.6 58 65.5
Sed0005071 Sechium edule HOM05D002224 ORTHO05D002446 4.2e-11 71.2 61 63.9
TWI53G1239 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 4.2e-11 71.2 59 64.4
TWI53G1395 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 4.2e-11 71.2 59 64.4
unitig_748.g7317 Utricularia gibba HOM05D002224 ORTHO05D002446 5.5e-11 70.9 63 60.3
Lsat_1_v5_gn_5_73041 Lactuca sativa HOM05D002224 ORTHO05D002446 7.2e-11 70.5 63 65.1
THA.LOC104801093 Tarenaya hassleriana HOM05D002224 ORTHO05D002446 7.2e-11 70.5 59 64.4
SHI00618 Sapria himalayana HOM05D002224 ORTHO05D002446 9.4e-11 70.1 57 63.2
Carub.0001s0349 Capsella rubella HOM05D002224 ORTHO05D002446 1.2e-10 69.7 63 63.5
Lalb_Chr02g0150601 Lupinus albus HOM05D002224 ORTHO05D002446 1.2e-10 69.7 62 62.9
Medtr1g073790 Medicago truncatula HOM05D002224 ORTHO05D002446 1.2e-10 69.7 58 65.5
THA.LOC104815986 Tarenaya hassleriana HOM05D002224 ORTHO05D002446 1.6e-10 69.3 61 63.9
ClCG05G004530 Citrullus lanatus HOM05D002224 ORTHO05D002446 2.1e-10 68.9 56 64.3
MELO3C006460.2 Cucumis melo HOM05D002224 ORTHO05D002446 2.1e-10 68.9 56 64.3
CsaV3_3G012500 Cucumis sativus L. HOM05D002224 ORTHO05D002446 2.1e-10 68.9 56 64.3
unitig_748.g8318 Utricularia gibba HOM05D002224 ORTHO05D002446 2.1e-10 68.9 62 62.9
CDE07G0985 Ceratophyllum demersum HOM05D002224 ORTHO05D002446 2.7e-10 68.6 62 56.5
Thhalv10003141m.g Eutrema salsugineum HOM05D002224 ORTHO05D002446 2.7e-10 68.6 62 56.5
Ah.07g207460 Amaranthus hybridus HOM05D002224 ORTHO05D002446 3.6e-10 68.2 61 59.0
CDE04G0749 Ceratophyllum demersum HOM05D002224 ORTHO05D002446 1.4e-09 66.2 62 54.8
Eucgr.H03150 Eucalyptus grandis HOM05D002224 ORTHO05D002446 2.3e-09 65.5 55 63.6
BcaC07g42194 Brassica carinata HOM05D002224 ORTHO05D002446 3.9e-09 64.7 68 57.4
Nn3g19583 Nelumbo nucifera HOM05D002224 ORTHO05D002446 3.9e-09 64.7 30 86.7
BcaC07g36918 Brassica carinata HOM05D002224 ORTHO05D002446 6.7e-09 63.9 64 57.8
A08p37000 Brassica napus HOM05D002224 ORTHO05D002446 6.7e-09 63.9 64 57.8
C08p01010 Brassica napus HOM05D002224 ORTHO05D002446 6.7e-09 63.9 64 57.8
BraA08t35600Z Brassica rapa HOM05D002224 ORTHO05D002446 6.7e-09 63.9 64 57.8
HPP92_010253 Vanilla planifolia HOM05D002224 ORTHO05D002446 2.5e-08 62.0 57 54.4
Zm00001eb030950 Zea mays HOM05D002224 ORTHO05D002446 2.5e-08 62.0 64 59.4
BolC8t46901H Brassica oleracea HOM05D002224 ORTHO05D002446 4.3e-08 61.2 64 56.2
ECA233G3249 Erigeron canadensis HOM05D002224 ORTHO05D002446 4.3e-08 61.2 44 65.9
CDE07G1877 Ceratophyllum demersum HOM05D002224 ORTHO05D002446 5.7e-08 60.8 30 80.0
Hma1.2p1_0650F.1_g195580 Hydrangea macrophylla HOM05D002224 ORTHO05D002446 5.7e-08 60.8 50 64.0
ATR0665G342 Amborella trichopoda HOM05D002224 ORTHO05D002446 2.8e-07 58.5 61 52.5
BcaC05g24454 Brassica carinata HOM05D002224 ORTHO05D002446 6.3e-07 57.4 59 55.9
C05p02490 Brassica napus HOM05D002224 ORTHO05D002446 6.3e-07 57.4 59 55.9
BolC5t29028H Brassica oleracea HOM05D002224 ORTHO05D002446 6.3e-07 57.4 59 55.9
HPP92_015885 Vanilla planifolia HOM05D002224 ORTHO05D002446 2.4e-06 55.5 42 59.5
Aqoxy2G03594 Aquilegia oxysepala HOM05D002224 ORTHO05D002446 3.1e-06 55.1 30 80.0
BcaC06g31689 Brassica carinata HOM05D002224 ORTHO05D002446 5.3e-06 54.3 52 53.8
C07p26200 Brassica napus HOM05D002224 ORTHO05D002446 5.3e-06 54.3 56 55.4
A10p02700 Brassica napus HOM05D002224 ORTHO05D002446 6.9e-06 53.9 59 52.5
BraA10t42539Z Brassica rapa HOM05D002224 ORTHO05D002446 6.9e-06 53.9 59 52.5
Thhalv10006644m.g Eutrema salsugineum HOM05D002224 ORTHO05D002446 6.9e-06 53.9 62 53.2


User provided reference genes

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