Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 0.0e+00 1299.6 697 100.0
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 6.4e-267 924.1 728 69.9
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 9.7e-247 857.1 724 70.6
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 2.2e-243 845.9 722 68.1
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 2.2e-238 829.3 785 61.1
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 3.1e-213 745.7 708 58.6
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 2.7e-212 742.7 714 58.1
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 1.0e-211 740.7 741 56.8
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 7.2e-210 734.6 721 57.7
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 1.2e-209 733.8 732 58.9
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 3.0e-208 729.2 589 67.6
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 6.8e-208 728.0 720 58.5
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 3.5e-204 715.7 730 56.0
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 7.7e-204 714.5 795 54.0
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 2.3e-203 713.0 696 58.6
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 6.6e-203 711.4 570 67.2
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 7.3e-202 708.0 720 56.1
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 6.8e-200 701.4 695 58.1
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 8.9e-200 701.0 767 54.6
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 9.8e-199 697.6 729 55.1
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 1.7e-198 696.8 755 54.6
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 1.7e-198 696.8 719 55.4
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 1.1e-197 694.1 730 55.3
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 3.2e-197 692.6 835 54.7
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 2.7e-196 689.5 727 54.5
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 3.5e-196 689.1 726 55.5
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 4.6e-196 688.7 596 64.1
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 5.9e-196 688.3 730 54.5
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 5.9e-196 688.3 784 52.3
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 2.3e-195 686.4 730 54.4
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 8.6e-195 684.5 719 55.5
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 8.6e-195 684.5 764 53.3
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 5.6e-194 681.8 737 57.3
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 7.3e-194 681.4 715 55.5
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 9.5e-194 681.0 683 59.2
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 6.2e-193 678.3 693 57.0
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 6.8e-192 674.9 489 71.8
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 9.8e-191 671.0 697 57.2
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 2.0e-188 663.3 697 54.1
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 6.0e-188 661.8 588 61.1
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 7.8e-188 661.4 728 54.7
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 3.0e-187 659.4 588 60.5
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 8.6e-187 657.9 692 56.4
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.3e-186 656.0 698 56.3
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 9.5e-186 654.4 587 61.3
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 8.1e-185 651.4 698 55.6
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 1.1e-184 651.0 723 52.3
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 1.8e-184 650.2 737 52.1
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 2.3e-184 649.8 588 59.5
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 3.1e-184 649.4 489 69.1
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 4.0e-184 649.0 501 69.5
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 1.2e-183 647.5 587 59.5
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 3.2e-181 639.4 581 60.1
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 7.1e-181 638.3 581 61.1
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 2.1e-180 636.7 595 59.2
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 3.5e-180 636.0 705 52.8
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 3.5e-180 636.0 588 60.0
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 6.0e-180 635.2 486 69.1
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 7.8e-180 634.8 586 59.7
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 2.3e-179 633.3 590 59.5
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 1.5e-178 630.6 587 59.3
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 2.5e-178 629.8 586 58.2
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 5.6e-178 628.6 589 59.1
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 9.5e-178 627.9 495 66.3
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 3.6e-177 625.9 582 60.0
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 4.7e-177 625.5 584 59.4
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 8.9e-176 621.3 596 58.7
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 1.7e-174 617.1 588 58.0
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 5.4e-173 612.1 582 59.3
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 5.4e-173 612.1 496 64.9
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 9.2e-173 611.3 603 56.2
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.7e-172 609.8 548 59.1
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 1.4e-168 597.4 444 69.8
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 1.5e-167 594.0 534 60.9
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 2.4e-165 586.6 551 61.3
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.4e-165 585.5 718 50.8
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.4e-160 570.9 483 63.1
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 1.4e-160 570.9 583 57.6
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 5.8e-159 565.5 586 53.8
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.2e-158 563.5 461 67.0
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 2.4e-157 560.1 688 50.6
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 3.2e-157 559.7 628 51.6
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 3.2e-157 559.7 628 51.6
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.2e-157 559.3 553 59.9
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 2.7e-156 556.6 630 51.4
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 1.3e-155 554.3 635 51.0
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 1.1e-152 544.7 378 73.3
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 5.8e-151 538.9 376 72.9
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 5.8e-151 538.9 553 55.5
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 3.9e-147 526.2 375 71.2
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 7.4e-146 521.9 372 72.3
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 5.5e-133 479.2 488 53.3
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 6.1e-132 475.7 486 51.6
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 5.1e-131 472.6 505 50.5
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.8e-129 466.1 533 49.5
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 6.9e-128 462.2 543 49.2
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.1e-122 444.9 533 48.2
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 3.8e-118 429.9 354 63.8
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 2.3e-107 394.0 312 65.7
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 4.8e-105 386.3 460 50.9
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.9e-101 374.4 263 73.0
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 5.5e-101 372.9 263 72.6
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.1e-96 355.5 333 61.3
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.7e-95 354.0 256 70.3
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 5.0e-86 323.2 327 51.4
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 3.7e-65 253.8 202 68.3
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.9e-61 241.5 227 55.9
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 5.6e-61 240.0 188 67.0
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.2e-60 238.8 256 57.0
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 2.6e-58 231.1 161 68.9
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.1e-52 211.5 234 56.4
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 6.0e-47 193.4 124 75.0
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 3.9e-46 190.7 457 32.6
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.8e-43 181.8 203 49.8
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.4e-40 170.2 255 43.9
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 2.1e-36 158.3 455 28.8
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 6.4e-33 146.7 87 79.3
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 1.1e-32 146.0 413 39.0
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.8e-30 138.7 444 25.7
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.9e-30 137.5 392 30.9
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 2.8e-28 131.3 446 27.1
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 1.4e-27 129.0 160 48.8
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.5e-26 125.6 167 47.3
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 2.2e-25 121.7 141 44.0
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.2e-25 121.7 163 45.4
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 4.2e-24 117.5 72 77.8
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 4.2e-24 117.5 416 27.9
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 3.9e-22 110.9 345 29.6
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.7e-22 110.2 176 42.6
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 7.4e-21 106.7 209 33.5
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 2.8e-20 104.8 67 74.6
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 1.1e-19 102.8 119 51.3
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.0e-17 96.3 371 26.4
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.3e-17 95.9 515 23.1
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-17 94.4 311 25.7
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 9.4e-16 89.7 529 23.6
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 2.7e-15 88.2 268 26.9
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 8.2e-12 76.6 131 42.0
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.3e-11 73.9 136 34.6
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 2.2e-09 68.6 72 55.6


User provided reference genes

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