Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042601 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D000443 7.4e-29 129.8 63 100.0
ClCG09G004110 Citrullus lanatus HOM05D000433 ORTHO05D000443 5.7e-13 77.0 44 77.3
Dinv43438 Davidia involucrata HOM05D000433 ORTHO05D000443 5.7e-13 77.0 45 82.2
Thecc.01G410200 Theobroma cacao HOM05D000433 ORTHO05D000443 5.7e-13 77.0 45 80.0
DCAR_022390 Daucus carota HOM05D000433 ORTHO05D000443 7.4e-13 76.6 46 78.3
Duzib268G0366 Durio zibethinus HOM05D000433 ORTHO05D000443 1.3e-12 75.9 45 80.0
vmacro04812 Vaccinium macrocarpon HOM05D000433 ORTHO05D000443 1.3e-12 75.9 38 94.7
Atru.chr11.2617 Acer truncatum HOM05D000433 ORTHO05D000443 1.6e-12 75.5 45 77.8
A09p55970 Brassica napus HOM05D000433 ORTHO05D000443 2.8e-12 74.7 43 81.4
Carub.0005s3013 Capsella rubella HOM05D000433 ORTHO05D000443 2.8e-12 74.7 40 87.5
CARHR291450 Cardamine hirsuta HOM05D000433 ORTHO05D000443 2.8e-12 74.7 40 87.5
Thhalv10005877m.g Eutrema salsugineum HOM05D000433 ORTHO05D000443 2.8e-12 74.7 40 87.5
COL.COLO4_04858 Corchorus olitorius HOM05D000433 ORTHO05D000443 3.7e-12 74.3 41 82.9
Potri.009G060500 Populus trichocarpa HOM05D000433 ORTHO05D000443 3.7e-12 74.3 45 77.8
TAR623G0564 Trochodendron aralioides HOM05D000433 ORTHO05D000443 3.7e-12 74.3 45 80.0
Cc02_g28080 Coffea canephora HOM05D000433 ORTHO05D000443 4.8e-12 73.9 45 80.0
Gohir.A08G054300 Gossypium hirsutum HOM05D000433 ORTHO05D000443 4.8e-12 73.9 40 87.5
Gorai.004G066100 Gossypium raimondii HOM05D000433 ORTHO05D000443 4.8e-12 73.9 40 87.5
Manes.10G141300 Manihot esculenta HOM05D000433 ORTHO05D000443 4.8e-12 73.9 40 85.0
Rhsim07G0056200 Rhododendron simsii HOM05D000433 ORTHO05D000443 4.8e-12 73.9 45 80.0
Rhsim07G0189000 Rhododendron simsii HOM05D000433 ORTHO05D000443 4.8e-12 73.9 37 94.6
Sp5g00060 Schrenkiella parvula HOM05D000433 ORTHO05D000443 4.8e-12 73.9 40 87.5
THA.LOC104823025 Tarenaya hassleriana HOM05D000433 ORTHO05D000443 4.8e-12 73.9 40 87.5
TAR369G0420 Trochodendron aralioides HOM05D000433 ORTHO05D000443 4.8e-12 73.9 45 77.8
Ah.10g038810 Amaranthus hybridus HOM05D000433 ORTHO05D000443 6.3e-12 73.6 41 85.4
BcaC07g40898 Brassica carinata HOM05D000433 ORTHO05D000443 6.3e-12 73.6 40 85.0
C08p38950 Brassica napus HOM05D000433 ORTHO05D000443 6.3e-12 73.6 40 85.0
BolC8t51468H Brassica oleracea HOM05D000433 ORTHO05D000443 6.3e-12 73.6 40 85.0
BolC8t51469H Brassica oleracea HOM05D000433 ORTHO05D000443 6.3e-12 73.6 40 85.0
BcaC02g10356 Brassica carinata HOM05D000433 ORTHO05D000443 8.2e-12 73.2 40 85.0
C04p29820 Brassica napus HOM05D000433 ORTHO05D000443 8.2e-12 73.2 40 85.0
CANSAT80G2227 Cannabis sativa HOM05D000433 ORTHO05D000443 8.2e-12 73.2 41 80.5
MELO3C023555.2 Cucumis melo HOM05D000433 ORTHO05D000443 8.2e-12 73.2 40 82.5
CsaV3_7G031010 Cucumis sativus L. HOM05D000433 ORTHO05D000443 8.2e-12 73.2 40 82.5
Lalb_Chr19g0132241 Lupinus albus HOM05D000433 ORTHO05D000443 8.2e-12 73.2 46 73.9
Nitab4.5_0007165g0030 Nicotiana tabacum HOM05D000433 ORTHO05D000443 8.2e-12 73.2 46 76.1
Peaxi162Scf00953g00218 Petunia axillaris HOM05D000433 ORTHO05D000443 8.2e-12 73.2 46 76.1
Potri.001G265400 Populus trichocarpa HOM05D000433 ORTHO05D000443 8.2e-12 73.2 45 75.6
Potri.001G265600 Populus trichocarpa HOM05D000433 ORTHO05D000443 8.2e-12 73.2 45 75.6
Potri.001G265900 Populus trichocarpa HOM05D000433 ORTHO05D000443 8.2e-12 73.2 45 75.6
QL04p005882 Quercus lobata HOM05D000433 ORTHO05D000443 8.2e-12 73.2 45 75.6
SalBow5G2570 Salvia bowleyana HOM05D000433 ORTHO05D000443 8.2e-12 73.2 40 87.5
Sc14g0005050 Simmondsia chinensis HOM05D000433 ORTHO05D000443 8.2e-12 73.2 40 85.0
AL5G46380 Arabidopsis lyrata HOM05D000433 ORTHO05D000443 1.1e-11 72.8 40 85.0
Eucgr.G03362 Eucalyptus grandis HOM05D000433 ORTHO05D000443 1.1e-11 72.8 37 91.9
Eucgr.G03374 Eucalyptus grandis HOM05D000433 ORTHO05D000443 1.1e-11 72.8 37 91.9
Hma1.2p1_0184F.1_g081210 Hydrangea macrophylla HOM05D000433 ORTHO05D000443 1.1e-11 72.8 45 77.8
Lalb_Chr20g0107981 Lupinus albus HOM05D000433 ORTHO05D000443 1.1e-11 72.8 41 80.5
RcHm_v2.0_Chr1g0316311 Rosa chinensis HOM05D000433 ORTHO05D000443 1.1e-11 72.8 46 69.6
SalBow5G2984 Salvia bowleyana HOM05D000433 ORTHO05D000443 1.1e-11 72.8 46 76.1
SalBow5G5576 Salvia bowleyana HOM05D000433 ORTHO05D000443 1.1e-11 72.8 46 76.1
Sed0007420 Sechium edule HOM05D000433 ORTHO05D000443 1.1e-11 72.8 45 73.3
TWI73G0222 Tripterygium wilfordii HOM05D000433 ORTHO05D000443 1.1e-11 72.8 45 75.6
AT3G63520 Arabidopsis thaliana HOM05D000433 ORTHO05D000443 1.4e-11 72.4 40 85.0
Glyma.12G236700 Glycine max HOM05D000433 ORTHO05D000443 1.4e-11 72.4 46 76.1
MBI01_g18876_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D000443 1.4e-11 72.4 41 82.9
PSO675G1923 Papaver somniferum HOM05D000433 ORTHO05D000443 1.4e-11 72.4 40 85.0
Prupe.2G014700 Prunus persica HOM05D000433 ORTHO05D000443 1.4e-11 72.4 45 73.3
PGR044G0030 Punica granatum HOM05D000433 ORTHO05D000443 1.4e-11 72.4 40 85.0
Sabra16G0163100 Salix brachista HOM05D000433 ORTHO05D000443 1.4e-11 72.4 50 68.0
Aa31LG10G17400 Aethionema arabicum HOM05D000433 ORTHO05D000443 1.8e-11 72.0 41 80.5
BcaB02g08056 Brassica carinata HOM05D000433 ORTHO05D000443 1.8e-11 72.0 40 82.5
CAN.G219.8 Capsicum annuum HOM05D000433 ORTHO05D000443 1.8e-11 72.0 46 73.9
Haze_03198 Corylus avellana HOM05D000433 ORTHO05D000443 1.8e-11 72.0 46 71.7
Haze_03199 Corylus avellana HOM05D000433 ORTHO05D000443 1.8e-11 72.0 41 82.9
DCAR_022385 Daucus carota HOM05D000433 ORTHO05D000443 1.8e-11 72.0 38 86.8
Lj7C571T11 Lonicera japonica HOM05D000433 ORTHO05D000443 1.8e-11 72.0 40 85.0
MD07G1011500 Malus domestica HOM05D000433 ORTHO05D000443 1.8e-11 72.0 45 73.3
Medtr8g037310 Medicago truncatula HOM05D000433 ORTHO05D000443 1.8e-11 72.0 46 76.1
A04p00060 Brassica napus HOM05D000433 ORTHO05D000443 2.4e-11 71.6 38 86.8
Lj3g0009657 Lotus japonicus HOM05D000433 ORTHO05D000443 2.4e-11 71.6 45 75.6
Lalb_Chr03g0034111 Lupinus albus HOM05D000433 ORTHO05D000443 2.4e-11 71.6 45 75.6
Nitab4.5_0004290g0050 Nicotiana tabacum HOM05D000433 ORTHO05D000443 2.4e-11 71.6 46 73.9
PGR044G0170 Punica granatum HOM05D000433 ORTHO05D000443 2.4e-11 71.6 45 77.8
PGR044G1035 Punica granatum HOM05D000433 ORTHO05D000443 2.4e-11 71.6 45 77.8
RcHm_v2.0_Chr1g0316181 Rosa chinensis HOM05D000433 ORTHO05D000443 2.4e-11 71.6 46 67.4
arahy.Tifrunner.gnm1.ann1.CX54DC Arachis hypogaea HOM05D000433 ORTHO05D000443 3.1e-11 71.2 40 85.0
arahy.Tifrunner.gnm1.ann1.GV0PL5 Arachis hypogaea HOM05D000433 ORTHO05D000443 3.1e-11 71.2 40 85.0
C08p38960 Brassica napus HOM05D000433 ORTHO05D000443 3.1e-11 71.2 37 89.2
CAN.G219.7 Capsicum annuum HOM05D000433 ORTHO05D000443 3.1e-11 71.2 45 75.6
AUR62009389 Chenopodium quinoa HOM05D000433 ORTHO05D000443 3.1e-11 71.2 40 85.0
Gohir.D08G064000 Gossypium hirsutum HOM05D000433 ORTHO05D000443 3.1e-11 71.2 40 85.0
Hma1.2p1_0184F.1_g081190 Hydrangea macrophylla HOM05D000433 ORTHO05D000443 3.1e-11 71.2 40 80.0
Sabra09G0044600 Salix brachista HOM05D000433 ORTHO05D000443 3.1e-11 71.2 37 89.2
Solyc01g087250.3 Solanum lycopersicum HOM05D000433 ORTHO05D000443 3.1e-11 71.2 45 75.6
Sopen01g034300 Solanum pennellii HOM05D000433 ORTHO05D000443 3.1e-11 71.2 45 75.6
A09p55980 Brassica napus HOM05D000433 ORTHO05D000443 4.1e-11 70.9 40 80.0
CiPaw.13G005400 Carya illinoinensis HOM05D000433 ORTHO05D000443 4.1e-11 70.9 40 80.0
Ciclev10031014m.g Citrus clementina HOM05D000433 ORTHO05D000443 4.1e-11 70.9 45 71.1
Ciclev10031039m.g Citrus clementina HOM05D000433 ORTHO05D000443 4.1e-11 70.9 45 75.6
FvH4_7g01130 Fragaria vesca HOM05D000433 ORTHO05D000443 4.1e-11 70.9 40 80.0
FAN01G0836 Fragaria x ananassa HOM05D000433 ORTHO05D000443 4.1e-11 70.9 40 80.0
FAN01G0975 Fragaria x ananassa HOM05D000433 ORTHO05D000443 4.1e-11 70.9 40 80.0
FAN03G3380 Fragaria x ananassa HOM05D000433 ORTHO05D000443 4.1e-11 70.9 40 80.0
MD02G1309700 Malus domestica HOM05D000433 ORTHO05D000443 4.1e-11 70.9 45 71.1
Oeu049497.3 Olea europaea HOM05D000433 ORTHO05D000443 4.1e-11 70.9 45 77.8
Sed0008090 Sechium edule HOM05D000433 ORTHO05D000443 4.1e-11 70.9 45 71.1
Zm00001eb057850 Zea mays HOM05D000433 ORTHO05D000443 4.1e-11 70.9 40 85.0
Zm00001eb402840 Zea mays HOM05D000433 ORTHO05D000443 4.1e-11 70.9 40 85.0
Cpa.g.sc125.7 Carica papaya HOM05D000433 ORTHO05D000443 5.3e-11 70.5 45 73.3
Glyma.13G202200 Glycine max HOM05D000433 ORTHO05D000443 5.3e-11 70.5 45 75.6
Lj9C633G15 Lonicera japonica HOM05D000433 ORTHO05D000443 5.3e-11 70.5 45 75.6
Nn2g15315 Nelumbo nucifera HOM05D000433 ORTHO05D000443 6.9e-11 70.1 38 84.2
Phvul.011G211200 Phaseolus vulgaris HOM05D000433 ORTHO05D000443 6.9e-11 70.1 45 75.6
VMungo1127G1125 Vigna mungo HOM05D000433 ORTHO05D000443 6.9e-11 70.1 45 75.6
Cfa010772 Carpinus fangiana HOM05D000433 ORTHO05D000443 9.1e-11 69.7 38 81.6
Haze_03200 Corylus avellana HOM05D000433 ORTHO05D000443 9.1e-11 69.7 46 69.6
Medtr8g037290 Medicago truncatula HOM05D000433 ORTHO05D000443 9.1e-11 69.7 46 73.9
Oeu007851.1 Olea europaea HOM05D000433 ORTHO05D000443 9.1e-11 69.7 45 75.6
Os12g0640600 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D000443 9.1e-11 69.7 42 78.6
MSTRG.20579 Avicennia marina HOM05D000433 ORTHO05D000443 1.2e-10 69.3 40 82.5
EL10Ac2g04335 Beta vulgaris HOM05D000433 ORTHO05D000443 1.2e-10 69.3 39 82.1
CANSAT80G0472 Cannabis sativa HOM05D000433 ORTHO05D000443 1.2e-10 69.3 45 75.6
DCAR_003216 Daucus carota HOM05D000433 ORTHO05D000443 1.2e-10 69.3 40 77.5
Oeu007868.2 Olea europaea HOM05D000433 ORTHO05D000443 1.2e-10 69.3 40 85.0
PSO541G1646 Papaver somniferum HOM05D000433 ORTHO05D000443 1.2e-10 69.3 40 80.0
Hund14182 Selenicereus undatus HOM05D000433 ORTHO05D000443 1.2e-10 69.3 40 82.5
SGA_v2.0_scaffold119G32738 Striga asiatica HOM05D000433 ORTHO05D000443 1.2e-10 69.3 45 73.3
Ca_23892_v3 Cicer arietinum L. HOM05D000433 ORTHO05D000443 1.5e-10 68.9 45 75.6
ECA234G3403 Erigeron canadensis HOM05D000433 ORTHO05D000443 1.5e-10 68.9 40 77.5
FAN10G2567 Fragaria x ananassa HOM05D000433 ORTHO05D000443 1.5e-10 68.9 40 77.5
Medtr8g037315 Medicago truncatula HOM05D000433 ORTHO05D000443 1.5e-10 68.9 45 73.3
GSVIVG01032103001 Vitis vinifera HOM05D000433 ORTHO05D000443 1.5e-10 68.9 45 71.1
BcaB08g35129 Brassica carinata HOM05D000433 ORTHO05D000443 2.0e-10 68.6 40 77.5
FAN06G3200 Fragaria x ananassa HOM05D000433 ORTHO05D000443 2.0e-10 68.6 37 83.8
Medtr8g037275 Medicago truncatula HOM05D000433 ORTHO05D000443 2.0e-10 68.6 46 71.7
Solyc01g087260.4 Solanum lycopersicum HOM05D000433 ORTHO05D000443 2.0e-10 68.6 45 71.1
Sopen01g034310 Solanum pennellii HOM05D000433 ORTHO05D000443 2.0e-10 68.6 45 71.1
MSTRG.17028 Avicennia marina HOM05D000433 ORTHO05D000443 2.6e-10 68.2 45 73.3
AUR62025811 Chenopodium quinoa HOM05D000433 ORTHO05D000443 2.6e-10 68.2 37 89.2
AUR62044218 Chenopodium quinoa HOM05D000433 ORTHO05D000443 2.6e-10 68.2 37 89.2
HanXRQChr16g0524481 Helianthus annuus HOM05D000433 ORTHO05D000443 2.6e-10 68.2 46 65.2
Nitab4.5_0002918g0020 Nicotiana tabacum HOM05D000433 ORTHO05D000443 3.4e-10 67.8 37 86.5
Peaxi162Scf00953g00316 Petunia axillaris HOM05D000433 ORTHO05D000443 3.4e-10 67.8 45 68.9
Psat4g148840 Pisum sativum HOM05D000433 ORTHO05D000443 3.4e-10 67.8 46 71.7
Lsat_1_v5_gn_4_31520 Lactuca sativa HOM05D000433 ORTHO05D000443 4.5e-10 67.4 40 77.5
Oeu048989.1 Olea europaea HOM05D000433 ORTHO05D000443 4.5e-10 67.4 37 83.8
Psat4g148800 Pisum sativum HOM05D000433 ORTHO05D000443 4.5e-10 67.4 46 69.6
GSVIVG01032110001 Vitis vinifera HOM05D000433 ORTHO05D000443 4.5e-10 67.4 45 71.1
MBI01_g18877_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D000443 5.9e-10 67.0 37 86.5
Peaxi162Scf00953g00416 Petunia axillaris HOM05D000433 ORTHO05D000443 5.9e-10 67.0 41 73.2
Aqoxy2G00193 Aquilegia oxysepala HOM05D000433 ORTHO05D000443 7.7e-10 66.6 45 71.1
CiPaw.13G005500 Carya illinoinensis HOM05D000433 ORTHO05D000443 7.7e-10 66.6 40 75.0
PGR004G1132 Punica granatum HOM05D000433 ORTHO05D000443 7.7e-10 66.6 41 75.6
QL04p006235 Quercus lobata HOM05D000433 ORTHO05D000443 1.0e-09 66.2 38 81.6
QL04p006260 Quercus lobata HOM05D000433 ORTHO05D000443 1.0e-09 66.2 45 71.1
CANSAT80G1890 Cannabis sativa HOM05D000433 ORTHO05D000443 1.3e-09 65.9 40 72.5
ATR0605G288 Amborella trichopoda HOM05D000433 ORTHO05D000443 1.7e-09 65.5 40 75.0
CANSAT80G0704 Cannabis sativa HOM05D000433 ORTHO05D000443 1.7e-09 65.5 40 75.0
BraA09t40999Z Brassica rapa HOM05D000433 ORTHO05D000443 2.2e-09 65.1 36 80.6
CANSAT80G0689 Cannabis sativa HOM05D000433 ORTHO05D000443 2.2e-09 65.1 40 72.5
PGR044G2631 Punica granatum HOM05D000433 ORTHO05D000443 2.2e-09 65.1 40 75.0
Carub.0002s1722 Capsella rubella HOM05D000433 ORTHO05D000443 2.9e-09 64.7 42 71.4
Carub.0002s1723 Capsella rubella HOM05D000433 ORTHO05D000443 2.9e-09 64.7 37 81.1
HanXRQChr17g0562991 Helianthus annuus HOM05D000433 ORTHO05D000443 2.9e-09 64.7 40 75.0
arahy.Tifrunner.gnm1.ann1.8D7DUE Arachis hypogaea HOM05D000433 ORTHO05D000443 3.8e-09 64.3 46 65.2
HPP92_023574 Vanilla planifolia HOM05D000433 ORTHO05D000443 5.0e-09 63.9 40 75.0
ATR0605G328 Amborella trichopoda HOM05D000433 ORTHO05D000443 6.5e-09 63.5 40 72.5
Pp3c22_6380 Physcomitrium patens HOM05D000433 ORTHO05D000443 1.1e-08 62.8 40 72.5
PGR004G2078 Punica granatum HOM05D000433 ORTHO05D000443 1.1e-08 62.8 40 67.5
PSO782G5515 Papaver somniferum HOM05D000433 ORTHO05D000443 1.4e-08 62.4 40 75.0
CDE10G1079 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 2.5e-08 61.6 40 72.5
PSO782G2691 Papaver somniferum HOM05D000433 ORTHO05D000443 2.5e-08 61.6 40 72.5
Peaxi162Scf00953g00039 Petunia axillaris HOM05D000433 ORTHO05D000443 9.4e-08 59.7 37 78.4
SMO004G0032 Selaginella moellendorffii HOM05D000433 ORTHO05D000443 3.6e-07 57.8 40 65.0
SMO361G0560 Selaginella moellendorffii HOM05D000433 ORTHO05D000443 3.6e-07 57.8 40 65.0
vmacro05208 Vaccinium macrocarpon HOM05D000433 ORTHO05D000443 3.6e-07 57.8 44 61.4
RhsimUnG0095600 Rhododendron simsii HOM05D000433 ORTHO05D000443 6.1e-07 57.0 43 65.1
Actinidia14734 Actinidia chinensis HOM05D000433 ORTHO05D000443 1.0e-06 56.2 38 68.4
Pp3c21_12920 Physcomitrium patens HOM05D000433 ORTHO05D000443 1.0e-06 56.2 35 68.6
ECA233G3739 Erigeron canadensis HOM05D000433 ORTHO05D000443 2.3e-06 55.1 38 65.8
Mapoly0003s0307 Marchantia polymorpha HOM05D000433 ORTHO05D000443 2.3e-06 55.1 43 60.5
Oeu042190.1 Olea europaea HOM05D000433 ORTHO05D000443 2.3e-06 55.1 38 68.4
PGSC0003DMG400018480 Solanum tuberosum HOM05D000433 ORTHO05D000443 2.3e-06 55.1 41 61.0
PGSC0003DMG400018481 Solanum tuberosum HOM05D000433 ORTHO05D000443 2.3e-06 55.1 41 61.0
Sopen08g001600 Solanum pennellii HOM05D000433 ORTHO05D000443 3.0e-06 54.7 41 61.0
ECA233G4327 Erigeron canadensis HOM05D000433 ORTHO05D000443 3.9e-06 54.3 43 60.5
MD05G1057000 Malus domestica HOM05D000433 ORTHO05D000443 5.1e-06 53.9 38 65.8
QL12p003794 Quercus lobata HOM05D000433 ORTHO05D000443 5.1e-06 53.9 38 65.8
Rhsim07G0139800 Rhododendron simsii HOM05D000433 ORTHO05D000443 5.1e-06 53.9 43 60.5
VMungo1215G3362 Vigna mungo HOM05D000433 ORTHO05D000443 5.1e-06 53.9 44 61.4
HanXRQChr08g0227631 Helianthus annuus HOM05D000433 ORTHO05D000443 6.7e-06 53.5 38 63.2
Pp3c18_17950 Physcomitrium patens HOM05D000433 ORTHO05D000443 6.7e-06 53.5 40 62.5
Pp3c12_22350 Physcomitrium patens HOM05D000433 ORTHO05D000443 8.8e-06 53.1 40 62.5


User provided reference genes

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