Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-44 180.6 90 100.0
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.2e-41 169.9 90 94.4
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.2e-41 169.9 90 94.4
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.0e-39 164.9 91 93.4
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-37 158.7 90 91.1
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-36 156.4 90 88.9
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-36 155.6 90 90.0
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-35 151.4 100 80.0
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 9.9e-27 123.2 113 57.5
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.9e-26 120.9 96 69.8
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 7.8e-24 113.6 114 54.4
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.7e-23 112.5 114 52.6
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-22 109.8 114 53.5
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 5.6e-22 107.5 105 52.4
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 9.5e-22 106.7 113 49.6
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 9.5e-22 106.7 112 47.3
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 8.1e-21 103.6 101 55.4
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.4e-20 102.1 98 54.1
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 3.1e-20 101.7 113 46.0
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.2e-19 99.8 113 46.9
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.2e-19 99.8 106 50.9
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 2.6e-19 98.6 98 52.0
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 4.4e-19 97.8 114 46.5
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 5.8e-19 97.4 105 48.6
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 7.6e-19 97.1 105 49.5
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 9.9e-19 96.7 102 53.9
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 9.9e-19 96.7 99 50.5
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.3e-18 96.3 111 43.2
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 3.8e-18 94.7 110 44.5
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.9e-18 94.4 105 46.7
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.1e-17 93.2 105 46.7
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 2.4e-17 92.0 100 48.0
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.4e-17 92.0 100 48.0
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 2.4e-17 92.0 108 45.4
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.4e-17 92.0 98 49.0
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 9.2e-17 90.1 106 47.2
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.6e-16 89.4 112 40.2
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 2.1e-16 89.0 105 43.8
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.1e-16 89.0 98 49.0
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 4.6e-16 87.8 105 43.8
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 4.6e-16 87.8 103 43.7
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 6.0e-16 87.4 110 43.6
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.0e-16 87.4 109 42.2
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 6.0e-16 87.4 101 45.5
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 7.8e-16 87.0 95 50.5
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.7e-15 85.9 99 46.5
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.7e-15 85.9 110 42.7
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.7e-15 85.9 97 47.4
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.3e-15 85.5 106 46.2
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 3.0e-15 85.1 103 45.6
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 3.9e-15 84.7 101 46.5
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.9e-15 84.7 95 48.4
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.9e-15 84.7 97 43.3
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 5.1e-15 84.3 100 44.0
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 5.1e-15 84.3 95 47.4
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 5.1e-15 84.3 100 43.0
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 5.1e-15 84.3 108 41.7
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 6.6e-15 84.0 100 42.0
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 8.7e-15 83.6 98 45.9
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 8.7e-15 83.6 97 45.4
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.5e-14 82.8 94 45.7
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 3.3e-14 81.6 96 43.8
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 4.3e-14 81.3 98 42.9
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 4.3e-14 81.3 92 44.6
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 5.6e-14 80.9 106 42.5
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.6e-13 79.3 106 38.7
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.1e-13 79.0 107 37.4
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.6e-13 78.2 99 43.4
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 3.6e-13 78.2 100 42.0
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.7e-13 77.8 106 38.7
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.2e-13 77.4 96 42.7
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 8.1e-13 77.0 96 40.6
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.4e-12 76.3 93 45.2
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.4e-12 76.3 109 40.4
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.4e-12 75.5 110 40.0
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.1e-12 75.1 93 44.1
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.1e-12 75.1 93 44.1
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 4.0e-12 74.7 107 36.4
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 4.0e-12 74.7 100 38.0
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.3e-12 74.3 95 43.2
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 6.9e-12 73.9 90 46.7
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 9.0e-12 73.6 98 38.8
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 9.0e-12 73.6 98 42.9
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 9.0e-12 73.6 96 42.7
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 9.0e-12 73.6 96 40.6
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.5e-11 72.8 98 41.8
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.0e-11 72.4 101 37.6
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.0e-11 72.4 85 43.5
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.6e-11 72.0 105 41.0
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.6e-11 72.0 105 39.0
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 3.4e-11 71.6 96 36.5
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 7.6e-11 70.5 102 37.3
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 7.6e-11 70.5 93 43.0
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 7.6e-11 70.5 107 39.3
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 7.6e-11 70.5 111 36.0
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 9.9e-11 70.1 100 37.0
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 9.9e-11 70.1 102 35.3
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.3e-10 69.7 99 39.4
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.7e-10 69.3 100 36.0
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.7e-10 69.3 100 36.0
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.9e-10 68.6 109 35.8
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.9e-10 68.6 85 42.4
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 2.9e-10 68.6 95 37.9
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 4.9e-10 67.8 97 37.1
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 4.9e-10 67.8 99 39.4
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 4.9e-10 67.8 66 53.0
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 4.9e-10 67.8 51 58.8
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.9e-10 67.8 100 36.0
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 6.4e-10 67.4 100 40.0
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 8.4e-10 67.0 93 39.8
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 3.2e-09 65.1 96 36.5
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 4.2e-09 64.7 59 54.2
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 5.4e-09 64.3 104 40.4
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 9.3e-09 63.5 102 35.3
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.2e-08 63.2 97 34.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-08 63.2 97 34.0
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.2e-08 63.2 97 34.0
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 2.7e-08 62.0 101 38.6
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.5e-08 61.6 104 40.4
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 3.5e-08 61.6 75 44.0
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.3e-07 59.7 84 34.5
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.7e-07 59.3 103 37.9
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 3.9e-07 58.2 51 51.0
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 3.9e-07 58.2 92 35.9
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.9e-07 58.2 84 35.7
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 5.1e-07 57.8 33 78.8
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 5.1e-07 57.8 100 35.0
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.5e-06 56.2 103 39.8


User provided reference genes

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