Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.5e-234 815.1 414 100.0
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.1e-205 719.9 395 94.4
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 9.4e-157 557.4 395 74.7
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 6.3e-153 544.7 399 70.2
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 1.4e-152 543.5 399 69.7
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 7.2e-149 531.2 407 71.0
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 4.7e-140 501.9 403 64.3
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 3.1e-136 489.2 400 65.8
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 3.5e-135 485.7 440 58.9
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 2.3e-134 483.0 399 63.7
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 8.9e-131 471.1 418 60.3
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 4.1e-128 462.2 390 59.7
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 1.2e-127 460.7 390 59.5
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 1.6e-127 460.3 426 58.0
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 4.6e-127 458.8 427 57.4
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 1.0e-126 457.6 422 58.5
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 6.6e-126 454.9 479 52.6
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 3.3e-125 452.6 422 55.7
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 1.2e-124 450.7 422 57.6
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 2.8e-124 449.5 400 60.2
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 4.7e-124 448.7 422 55.5
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 6.2e-124 448.4 422 55.5
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 1.8e-123 446.8 398 58.3
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 1.5e-122 443.7 422 56.6
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 1.3e-121 440.7 400 58.2
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 1.3e-121 440.7 400 58.2
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 2.2e-121 439.9 422 56.2
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 2.2e-121 439.9 406 57.6
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 4.9e-121 438.7 420 56.7
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 1.0e-118 431.0 422 55.5
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 1.7e-118 430.3 422 56.2
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 3.0e-118 429.5 430 53.7
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 1.1e-117 427.6 399 57.9
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 1.2e-116 424.1 410 56.3
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.2e-116 424.1 424 55.0
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 4.0e-115 419.1 422 54.3
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 3.4e-114 416.0 422 54.0
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 1.3e-113 414.1 424 51.9
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 3.7e-113 412.5 399 57.1
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 5.4e-112 408.7 399 55.6
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 1.6e-111 407.1 399 55.1
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 4.6e-111 405.6 423 52.5
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 1.3e-110 404.1 399 55.4
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 2.3e-110 403.3 399 54.4
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 6.6e-110 401.7 399 53.1
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 1.5e-109 400.6 399 54.1
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 1.5e-109 400.6 423 52.2
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 2.5e-109 399.8 422 51.9
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 7.3e-109 398.3 399 54.6
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 7.3e-109 398.3 399 53.9
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 9.5e-109 397.9 398 53.5
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 2.1e-108 396.7 399 53.6
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 3.6e-108 396.0 396 55.6
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 4.7e-108 395.6 423 53.4
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 4.4e-106 389.0 399 52.9
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 4.4e-106 389.0 419 50.1
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 8.4e-105 384.8 402 51.7
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 1.4e-104 384.0 402 51.5
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 2.1e-103 380.2 396 53.8
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 8.6e-102 374.8 406 49.5
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 3.1e-99 366.3 420 49.0
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 3.1e-99 366.3 420 49.0
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 4.4e-98 362.5 399 50.4
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 9.9e-98 361.3 420 48.8
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 1.7e-97 360.5 420 48.6
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 6.4e-97 358.6 422 48.3
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 1.9e-96 357.1 419 50.6
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.7e-95 353.2 418 49.3
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 1.7e-94 350.5 429 49.4
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 2.3e-94 350.1 389 51.2
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 3.9e-94 349.4 421 46.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 8.7e-94 348.2 395 54.7
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 1.1e-93 347.8 429 49.0
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 1.5e-93 347.4 420 47.6
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 1.9e-93 347.1 420 47.6
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 8.1e-92 341.7 444 45.7
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 1.4e-91 340.9 409 46.5
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.4e-91 340.9 367 48.8
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 3.1e-91 339.7 416 46.9
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.4e-90 336.3 379 46.4
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 4.5e-90 335.9 420 47.9
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 9.9e-90 334.7 408 47.8
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 2.9e-89 333.2 418 45.9
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 2.9e-89 333.2 377 50.4
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 8.4e-89 331.6 421 45.8
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 4.2e-88 329.3 418 46.4
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 3.5e-87 326.2 419 46.5
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 1.3e-86 324.3 395 47.6
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 2.3e-86 323.6 403 47.9
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 3.0e-86 323.2 449 43.4
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.1e-85 321.2 395 46.8
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.5e-85 320.1 395 46.6
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 5.6e-85 318.9 395 47.3
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 4.0e-83 312.8 459 41.8
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 1.3e-81 307.8 340 53.8
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 1.1e-80 304.7 448 43.3
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 1.8e-78 297.4 306 52.6
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 2.3e-78 297.0 419 40.1
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 1.3e-70 271.2 346 46.5
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 6.7e-70 268.9 332 45.8
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 3.7e-68 263.1 418 40.2
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 2.4e-67 260.4 187 67.9
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 6.5e-65 252.3 365 40.3
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 9.7e-61 238.4 376 40.2
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 1.6e-60 237.7 370 35.1
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 1.1e-59 235.0 258 52.7
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.0e-54 218.4 226 50.4
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 8.2e-52 208.8 177 57.1
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 4.7e-47 193.0 391 33.8
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.0e-42 177.6 185 51.9
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 4.5e-42 176.4 150 56.7
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.2e-41 174.1 190 52.1
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.4e-35 154.8 154 59.7
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 5.0e-33 146.4 182 48.9
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 9.4e-32 142.1 146 50.0
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.7e-31 139.8 198 43.4
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 5.4e-27 126.3 184 39.7
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 8.8e-22 109.0 69 75.4
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 4.5e-18 96.7 317 28.1
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 4.5e-18 96.7 317 28.1
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 7.8e-18 95.9 141 38.3
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 1.7e-17 94.7 92 48.9
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 1.7e-17 94.7 91 52.7
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 2.3e-17 94.4 318 23.9
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 2.3e-14 84.3 100 43.0


User provided reference genes

Program Settings