Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.1e-153 547.0 372 100.0
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 3.6e-139 498.8 372 93.3
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 5.8e-81 305.4 321 63.2
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 1.5e-73 280.8 354 55.4
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 4.2e-71 272.7 400 57.8
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 2.1e-70 270.4 326 63.2
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 1.3e-69 267.7 351 50.7
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 3.0e-69 266.5 341 52.5
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 5.1e-69 265.8 330 61.2
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 6.6e-69 265.4 338 52.4
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.9e-68 263.8 338 58.3
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.6e-68 262.3 330 55.5
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.8e-66 257.3 343 47.5
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.8e-66 257.3 328 55.8
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.8e-65 252.3 327 54.4
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 6.4e-64 248.8 329 60.2
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 6.4e-64 248.8 332 57.2
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 1.4e-63 247.7 342 57.0
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 1.9e-63 247.3 415 52.5
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 2.4e-63 246.9 327 59.9
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 4.2e-63 246.1 347 54.8
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 1.2e-62 244.6 342 50.9
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 1.0e-61 241.5 322 56.5
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 5.1e-61 239.2 363 51.8
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 3.3e-60 236.5 340 62.9
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 5.6e-60 235.7 276 58.0
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 5.6e-60 235.7 332 53.0
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 7.4e-60 235.3 343 51.6
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 9.6e-60 235.0 334 58.1
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.6e-59 234.2 319 51.4
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 3.7e-59 233.0 334 47.6
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 6.2e-59 232.3 339 48.1
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 1.4e-58 231.1 338 51.8
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.8e-58 230.7 376 43.1
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 5.3e-58 229.2 335 62.4
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 5.3e-58 229.2 355 57.2
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 5.3e-58 229.2 330 52.1
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 1.5e-57 227.6 352 52.8
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 2.6e-57 226.9 341 47.2
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 3.4e-57 226.5 379 59.9
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 3.4e-57 226.5 404 42.8
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 9.9e-57 224.9 372 56.5
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 1.3e-56 224.6 362 56.6
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 3.8e-56 223.0 353 49.0
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 4.9e-56 222.6 328 59.8
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 8.4e-56 221.9 335 49.9
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 8.4e-56 221.9 368 45.1
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 1.1e-55 221.5 340 59.4
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 3.2e-55 219.9 324 47.2
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 7.1e-55 218.8 331 47.1
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 1.6e-54 217.6 394 53.8
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 4.6e-54 216.1 321 52.6
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 4.6e-54 216.1 321 53.0
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 7.9e-54 215.3 321 52.6
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 1.0e-53 214.9 340 51.2
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 1.3e-53 214.5 346 56.4
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 1.3e-53 214.5 344 49.4
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.3e-53 214.5 327 51.1
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 1.8e-53 214.2 341 48.4
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 1.8e-53 214.2 355 58.3
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 3.9e-53 213.0 356 49.7
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 3.9e-53 213.0 366 52.5
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 6.7e-53 212.2 330 49.7
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 6.7e-53 212.2 358 53.6
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 8.7e-53 211.8 385 46.2
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 8.7e-53 211.8 372 48.1
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.5e-52 211.1 346 52.0
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 1.9e-52 210.7 395 50.9
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 2.5e-52 210.3 412 54.4
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 3.3e-52 209.9 240 62.5
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 4.3e-52 209.5 351 56.1
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 9.6e-52 208.4 363 43.3
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 2.8e-51 206.8 364 46.4
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 2.8e-51 206.8 341 54.8
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 4.8e-51 206.1 329 48.3
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 4.8e-51 206.1 316 47.8
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 8.2e-51 205.3 422 48.8
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 1.4e-50 204.5 408 47.1
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 1.4e-50 204.5 406 53.2
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 2.4e-50 203.8 311 54.3
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 2.4e-50 203.8 326 47.9
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 2.4e-50 203.8 386 47.9
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 3.1e-50 203.4 395 47.8
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 3.1e-50 203.4 394 42.4
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 4.0e-50 203.0 367 52.9
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 4.0e-50 203.0 362 50.0
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 6.9e-50 202.2 339 53.1
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 6.9e-50 202.2 395 42.0
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 1.2e-49 201.4 338 45.6
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 7.6e-49 198.7 326 50.0
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 1.0e-48 198.4 353 47.6
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 6.5e-48 195.7 245 50.2
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 1.1e-47 194.9 355 53.8
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 2.5e-47 193.7 332 51.2
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 3.2e-47 193.4 410 44.4
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 4.2e-47 193.0 354 50.6
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 5.5e-47 192.6 333 47.7
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 5.5e-47 192.6 342 60.5
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 9.3e-47 191.8 351 52.4
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 9.3e-47 191.8 348 57.5
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.6e-46 191.0 353 56.7
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 2.1e-46 190.7 361 47.4
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 2.1e-46 190.7 352 57.4
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 2.7e-46 190.3 395 37.2
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 1.8e-45 187.6 357 51.8
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 3.0e-45 186.8 321 48.9
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.1e-44 184.9 389 41.6
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.1e-44 184.9 321 48.0
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.8e-43 180.3 354 41.5
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.7e-43 179.9 319 47.3
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.1e-42 178.3 381 45.1
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 2.4e-42 177.2 377 48.0
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.1e-42 176.8 348 46.3
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.1e-42 176.8 348 46.3
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 5.3e-42 176.0 351 44.7
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 9.0e-42 175.3 355 54.6
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.5e-41 174.5 350 44.3
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.0e-41 174.1 348 45.7
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 2.6e-41 173.7 344 49.7
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 1.3e-40 171.4 407 45.5
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.3e-40 171.4 244 49.6
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.7e-40 171.0 341 53.7
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.7e-40 171.0 341 53.7
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.7e-40 171.0 316 45.9
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 2.9e-40 170.2 466 39.7
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 8.5e-40 168.7 234 60.7
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.9e-39 167.5 317 55.8
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.5e-39 167.2 341 41.1
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 9.3e-39 165.2 228 50.4
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 2.7e-38 163.7 327 43.1
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 1.8e-37 161.0 208 48.1
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 6.7e-37 159.1 122 65.6
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 2.8e-35 153.7 121 65.3
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 6.9e-34 149.1 123 64.2
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 3.8e-32 143.3 121 59.5
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 4.2e-31 139.8 262 43.5
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 4.7e-30 136.3 314 39.2
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 6.1e-30 136.0 311 35.0
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 3.0e-29 133.7 317 37.5
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 6.7e-29 132.5 76 81.6
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 4.4e-28 129.8 245 47.8
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 8.5e-24 115.5 360 40.0
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 7.2e-23 112.5 332 42.5
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 8.0e-22 109.0 82 64.6
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 1.4e-21 108.2 264 38.6
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 5.7e-20 102.8 256 35.5
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 1.8e-18 97.8 82 57.3
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 2.5e-15 87.4 135 54.1
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 4.7e-14 83.2 290 40.3
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 5.2e-13 79.7 286 33.6
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 5.2e-13 79.7 109 37.6
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 2.2e-11 74.3 58 62.1
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 1.9e-07 61.2 56 55.4
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 4.2e-07 60.1 41 63.4
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 2.1e-06 57.8 35 65.7
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 3.6e-06 57.0 34 64.7
SEGI_41358 Sequoiadendron giganteum HOM05D005264 ORTHO05D005428 3.6e-06 57.0 38 63.2
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 3.6e-06 57.0 54 61.1
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 4.7e-06 56.6 32 65.6
Hma1.2p1_0285F.1_g113900 Hydrangea macrophylla HOM05D005264 ORTHO05D005428 6.1e-06 56.2 55 50.9
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 6.1e-06 56.2 34 64.7
C03p89560 Brassica napus HOM05D005264 ORTHO05D005428 8.0e-06 55.8 47 57.4
BolC6t35643H Brassica oleracea HOM05D005264 ORTHO05D005428 8.0e-06 55.8 47 57.4
Gohir.D01G138800 Gossypium hirsutum HOM05D005264 ORTHO05D005428 8.0e-06 55.8 52 51.9
Gorai.002G167100 Gossypium raimondii HOM05D005264 ORTHO05D005428 8.0e-06 55.8 52 51.9
Nitab4.5_0007261g0060 Nicotiana tabacum HOM05D005264 ORTHO05D005428 8.0e-06 55.8 34 64.7
Peaxi162Scf00760g00024 Petunia axillaris HOM05D005264 ORTHO05D005428 8.0e-06 55.8 34 64.7
THA.LOC104826521 Tarenaya hassleriana HOM05D005264 ORTHO05D005428 8.0e-06 55.8 47 57.4
HPP92_013043 Vanilla planifolia HOM05D005264 ORTHO05D005428 8.0e-06 55.8 55 49.1


User provided reference genes

Program Settings