Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 6.3e-196 687.2 333 100.0
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.6e-194 682.6 333 99.1
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 8.6e-161 570.5 329 81.8
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.5e-157 559.7 356 75.8
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 6.9e-150 534.3 331 76.7
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 6.2e-143 511.1 329 74.5
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 2.1e-135 486.1 329 72.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.1e-134 483.8 331 69.2
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.0e-129 467.2 331 66.2
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 3.9e-129 465.3 328 67.1
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 4.3e-128 461.8 298 71.1
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 7.4e-128 461.1 306 69.0
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 7.4e-128 461.1 289 73.7
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 2.1e-127 459.5 333 65.5
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.1e-127 459.5 294 72.8
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.1e-126 457.2 328 66.2
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.4e-126 456.8 289 72.7
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 1.4e-126 456.8 287 70.7
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 3.1e-126 455.7 327 67.0
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.5e-125 453.4 330 66.4
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 2.0e-125 453.0 329 66.3
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.6e-125 452.6 293 71.0
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 2.6e-125 452.6 287 71.1
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.5e-125 451.8 283 73.1
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 4.5e-125 451.8 325 66.5
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 4.5e-125 451.8 336 65.8
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 2.2e-124 449.5 308 66.2
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 8.4e-124 447.6 322 66.8
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 1.1e-123 447.2 301 67.1
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.1e-123 447.2 336 65.2
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 1.4e-123 446.8 328 66.2
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.4e-123 446.8 259 79.2
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.9e-123 446.4 291 71.8
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 4.2e-123 445.3 299 68.9
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 9.3e-123 444.1 331 64.7
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 9.3e-123 444.1 343 61.8
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 6.0e-122 441.4 340 62.4
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 7.9e-122 441.0 326 65.6
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 2.3e-121 439.5 331 64.0
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 3.9e-121 438.7 329 62.9
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 5.1e-121 438.3 290 69.0
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.3e-119 433.7 284 68.0
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.8e-118 429.9 341 63.3
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 5.3e-118 428.3 334 62.6
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 6.9e-118 427.9 327 62.4
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.4e-117 425.6 329 60.8
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 4.2e-115 418.7 251 76.5
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 3.6e-114 415.6 249 74.3
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.1e-112 410.6 323 63.2
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.1e-112 410.6 250 74.8
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 3.3e-112 409.1 284 68.3
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.7e-111 406.8 281 63.3
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 4.8e-111 405.2 284 67.3
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 4.8e-111 405.2 281 68.3
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.1e-110 404.1 256 73.0
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 1.8e-110 403.3 301 64.8
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 5.3e-110 401.7 309 62.8
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 9.1e-110 401.0 291 63.9
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 9.1e-110 401.0 328 57.0
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.0e-108 397.5 312 61.5
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.7e-108 396.7 315 57.8
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 2.9e-108 396.0 251 72.1
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 5.0e-108 395.2 349 58.2
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.4e-107 393.7 328 56.1
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.9e-107 393.3 328 56.4
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 5.5e-107 391.7 281 65.8
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 1.6e-106 390.2 319 56.1
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 2.7e-106 389.4 328 56.4
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 4.7e-106 388.7 315 56.8
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 6.1e-106 388.3 313 56.9
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 7.9e-106 387.9 297 59.3
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.8e-105 386.7 298 58.4
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 2.3e-105 386.3 221 77.8
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 8.8e-105 384.4 294 59.2
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 2.6e-104 382.9 315 55.9
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 2.6e-104 382.9 328 55.8
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 4.4e-104 382.1 329 55.0
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 5.7e-104 381.7 315 55.6
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 9.7e-104 380.9 248 68.1
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 2.2e-103 379.8 315 55.6
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 4.1e-102 375.6 286 62.9
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.3e-100 370.5 286 60.1
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 1.9e-99 366.7 250 69.2
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 6.7e-97 358.2 247 65.6
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.1e-96 357.5 330 56.1
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.1e-96 357.5 293 59.4
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.2e-92 343.2 286 58.4
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 2.9e-92 342.8 328 51.5
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 5.0e-92 342.0 295 53.6
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 1.6e-90 337.0 308 51.6
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 6.1e-90 335.1 256 64.1
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.7e-88 328.6 190 78.4
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 5.3e-86 322.0 333 49.8
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.6e-85 320.5 281 56.6
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.1e-82 310.1 201 71.1
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 3.6e-82 309.3 223 65.0
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.4e-81 307.4 283 54.4
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 3.0e-81 306.2 279 49.8
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.2e-80 304.3 191 70.2
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 2.0e-80 303.5 278 48.6
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 2.2e-79 300.1 214 64.0
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 3.7e-79 299.3 165 80.6
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.5e-77 292.4 336 50.3
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 1.9e-75 287.0 302 45.4
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.2e-74 284.3 284 48.2
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.2e-69 267.7 166 78.3
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 2.8e-66 256.5 154 72.7
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.1e-65 253.1 153 71.9
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 6.8e-65 251.9 241 56.0
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.4e-63 245.4 178 65.7
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 6.4e-63 245.4 241 54.4
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 5.8e-56 222.2 234 49.1
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 4.1e-54 216.1 152 65.1
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 5.1e-52 209.1 184 58.7
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.1e-45 187.2 231 46.3
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 8.6e-44 181.8 117 68.4
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.5e-43 181.0 195 50.3
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 2.5e-43 180.3 127 63.8
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.2e-42 177.9 278 38.1
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 2.4e-41 173.7 216 37.0
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-40 171.0 148 58.1
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 4.6e-37 159.5 112 73.2
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.0e-36 158.3 149 59.1
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.0e-36 158.3 77 90.9
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.1e-35 154.8 132 56.1
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 5.3e-33 146.0 127 55.1
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.1e-27 128.3 102 61.8
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 5.6e-27 125.9 220 40.9
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.6e-26 124.4 100 61.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.9e-23 113.6 64 81.2
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.0e-20 103.6 76 57.9
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.1e-14 85.1 85 51.8
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 7.9e-13 79.0 82 52.4


User provided reference genes

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