Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.1e-46 187.6 86 100.0
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.4e-43 176.4 104 82.7
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.8e-41 172.2 104 80.8
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.8e-41 169.9 104 79.8
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.4e-40 167.5 104 78.8
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.3e-39 163.7 104 76.0
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 1.1e-35 152.9 104 71.2
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 6.7e-33 143.7 104 68.3
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.5e-32 142.5 104 67.3
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 1.5e-32 142.5 82 78.0
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 2.6e-32 141.7 106 64.2
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 9.7e-32 139.8 104 65.4
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 1.0e-28 129.8 103 61.2
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.3e-28 129.4 104 62.5
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.7e-28 129.0 104 62.5
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.7e-28 129.0 105 63.8
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 2.2e-28 128.6 103 60.2
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 2.9e-28 128.3 105 63.8
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 3.8e-28 127.9 105 63.8
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 5.0e-28 127.5 106 62.3
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 1.5e-27 125.9 103 59.2
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.9e-27 125.6 104 59.6
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 3.2e-27 124.8 93 63.4
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 4.2e-27 124.4 91 67.0
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 9.4e-27 123.2 101 61.4
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 9.4e-27 123.2 104 56.7
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 1.6e-26 122.5 104 59.6
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.1e-26 122.1 104 59.6
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 2.1e-26 122.1 104 58.7
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 4.7e-26 120.9 104 58.7
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.4e-25 119.4 103 56.3
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 1.4e-25 119.4 103 56.3
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 1.4e-25 119.4 103 56.3
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.8e-25 119.0 104 58.7
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 4.0e-25 117.9 99 61.6
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 4.0e-25 117.9 103 55.3
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.2e-24 116.3 105 58.1
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 2.0e-24 115.5 92 64.1
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.6e-24 115.2 104 59.6
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 4.4e-24 114.4 91 60.4
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 9.7e-24 113.2 103 54.4
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 9.7e-24 113.2 103 56.3
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.7e-23 112.5 104 57.7
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 1.7e-23 112.5 103 55.3
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.8e-23 111.7 104 55.8
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 3.7e-23 111.3 104 54.8
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 6.3e-23 110.5 104 54.8
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 6.3e-23 110.5 104 52.9
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 6.3e-23 110.5 104 54.8
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 1.1e-22 109.8 105 58.1
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 2.4e-22 108.6 102 52.9
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 3.1e-22 108.2 100 55.0
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 4.1e-22 107.8 104 51.0
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 9.1e-22 106.7 98 56.1
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 1.2e-21 106.3 93 60.2
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.0e-21 105.5 109 49.5
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 4.5e-21 104.4 104 49.0
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 5.9e-21 104.0 109 49.5
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 1.0e-20 103.2 93 57.0
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.0e-20 103.2 98 53.1
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 1.7e-20 102.4 104 49.0
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 2.2e-20 102.1 102 52.9
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 5.0e-20 100.9 107 47.7
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 5.0e-20 100.9 101 51.5
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 6.5e-20 100.5 106 52.8
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 1.9e-19 99.0 105 48.6
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.9e-19 99.0 105 47.6
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 5.5e-19 97.4 104 49.0
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 7.2e-19 97.1 103 52.4
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 7.2e-19 97.1 103 52.4
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 7.2e-19 97.1 103 52.4
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 9.4e-19 96.7 101 51.5
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 9.4e-19 96.7 101 51.5
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 9.4e-19 96.7 101 51.5
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.2e-18 96.3 102 48.0
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.1e-18 95.5 101 50.5
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.7e-18 95.1 101 50.5
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 4.7e-18 94.4 108 45.4
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 6.1e-18 94.0 102 49.0
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 5.2e-17 90.9 94 53.2
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 5.2e-17 90.9 103 46.6
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.2e-17 90.9 97 47.4
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 5.2e-17 90.9 97 47.4
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 6.8e-17 90.5 102 48.0
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 1.5e-16 89.4 101 49.5
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 2.6e-16 88.6 84 51.2
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 2.6e-16 88.6 103 45.6
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 3.4e-16 88.2 109 44.0
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 3.4e-16 88.2 95 46.3
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 4.4e-16 87.8 84 51.2
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 5.7e-16 87.4 106 44.3
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 7.5e-16 87.0 109 43.1
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 7.5e-16 87.0 97 46.4
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 7.5e-16 87.0 105 44.8
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.3e-15 86.3 84 51.2
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.7e-15 85.9 109 43.1
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.7e-15 85.9 109 43.1
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.7e-15 85.9 84 52.4
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.7e-15 85.9 101 46.5
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 2.2e-15 85.5 109 43.1
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.8e-15 85.1 109 42.2
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 3.7e-15 84.7 70 50.0
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 4.8e-15 84.3 70 54.3
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 6.3e-15 84.0 109 43.1
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 6.3e-15 84.0 109 42.2
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 6.3e-15 84.0 89 48.3
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 8.3e-15 83.6 107 42.1
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 8.3e-15 83.6 84 45.2
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 8.3e-15 83.6 75 61.3
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.1e-14 83.2 70 52.9
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.1e-14 83.2 101 40.6
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.8e-14 82.4 70 50.0
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 4.1e-14 81.3 84 45.2
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 5.4e-14 80.9 70 50.0
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 7.0e-14 80.5 92 45.7
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 7.0e-14 80.5 104 39.4
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 1.2e-13 79.7 102 43.1
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.6e-13 79.3 103 45.6
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 1.6e-13 79.3 104 38.5
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 1.6e-13 79.3 104 38.5
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.5e-13 78.2 71 53.5
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 4.5e-13 77.8 103 44.7
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 7.7e-13 77.0 90 43.3
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 1.0e-12 76.6 89 46.1
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 1.3e-12 76.3 104 37.5
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.3e-12 76.3 105 39.0
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 5.0e-12 74.3 70 48.6
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 5.0e-12 74.3 101 40.6
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 6.6e-12 73.9 99 39.4
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 8.6e-12 73.6 90 40.0
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 8.6e-12 73.6 68 50.0
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.9e-11 72.4 68 45.6
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 1.9e-11 72.4 84 45.2
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 2.5e-11 72.0 101 42.6
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 5.5e-11 70.9 98 42.9
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 4.7e-10 67.8 86 41.9
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 6.1e-10 67.4 89 38.2
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.0e-09 66.6 92 40.2
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 1.4e-09 66.2 86 40.7
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 4.0e-09 64.7 102 39.2
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 6.8e-09 63.9 104 34.6
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 2.6e-08 62.0 111 37.8
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.3e-07 59.7 112 32.1
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 3.7e-07 58.2 90 33.3
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 4.9e-07 57.8 90 34.4
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 8.3e-07 57.0 42 57.1
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.4e-06 55.5 55 49.1
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 4.1e-06 54.7 95 36.8
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 7.0e-06 53.9 103 29.1
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 9.2e-06 53.5 84 33.3


User provided reference genes

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