Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1406.0 707 100.0
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1375.5 739 95.1
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1254.6 722 87.8
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1240.7 725 86.3
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1220.7 747 83.1
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1218.0 747 83.1
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1200.7 718 83.8
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1199.5 718 83.6
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1193.3 719 83.6
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1189.1 722 83.1
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1187.9 719 83.6
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1187.2 719 83.3
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1184.9 714 83.5
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1183.7 719 83.7
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1183.7 705 84.3
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1182.5 716 82.3
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1179.5 701 85.2
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1177.2 710 83.2
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1176.8 696 84.6
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1176.0 675 87.4
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1174.8 707 83.9
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1165.2 724 82.6
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1164.4 705 82.4
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1164.1 727 81.2
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1162.5 721 80.7
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1162.5 717 83.0
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1161.0 720 81.8
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1159.8 719 82.2
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1159.4 672 85.1
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1159.4 733 81.3
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1159.1 663 85.5
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1155.6 701 82.7
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1155.6 714 81.2
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1152.5 648 87.5
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1152.5 722 81.7
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1152.1 724 80.9
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1151.7 719 80.9
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 0.0e+00 1147.9 929 67.7
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1146.7 721 81.7
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1144.0 691 83.4
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1143.6 751 78.0
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1143.3 707 82.0
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1141.7 726 80.4
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1139.8 726 79.9
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1138.3 751 77.8
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1136.3 740 79.6
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1135.9 715 80.0
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1134.4 701 81.3
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1133.6 649 86.4
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1129.8 720 80.1
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1126.7 706 80.3
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1125.9 691 82.9
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1123.2 781 73.9
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1123.2 781 73.9
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1121.3 704 80.1
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1120.9 712 79.5
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1119.4 694 80.3
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1115.5 707 80.1
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1114.8 648 85.5
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1112.4 715 79.4
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1112.1 706 80.0
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1109.7 690 80.7
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1106.3 724 78.5
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1104.4 708 79.5
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1104.4 708 79.5
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1104.0 809 72.3
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1103.6 695 80.0
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 703 79.2
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1100.9 646 83.6
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1099.3 649 82.0
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1098.6 721 77.7
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1095.5 724 77.8
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1090.1 640 82.3
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 0.0e+00 1087.4 731 77.7
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1085.9 700 79.9
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1084.7 667 81.7
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1082.8 652 84.0
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 0.0e+00 1081.6 790 72.2
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1076.2 671 81.2
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.5e-308 1062.4 746 74.3
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 5.8e-308 1060.4 648 82.3
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 4.3e-303 1044.3 783 71.3
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 3.6e-297 1024.6 658 79.3
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 1.0e-288 996.5 655 75.7
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 1.7e-286 989.2 637 75.4
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 9.1e-285 983.4 567 85.0
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 7.0e-277 957.2 622 75.2
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 8.0e-273 943.7 563 85.4
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 2.8e-270 935.3 529 87.1
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 1.8e-269 932.6 527 87.3
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 7.0e-269 930.6 527 85.8
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 5.9e-268 927.5 527 86.3
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 7.7e-268 927.2 646 73.2
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 8.5e-267 923.7 553 84.3
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 1.2e-263 913.3 602 73.6
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.5e-263 912.9 556 82.4
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 1.9e-258 896.0 600 75.8
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 6.1e-257 891.0 584 77.6
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 3.0e-256 888.6 633 69.2
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 2.3e-243 845.9 624 67.5
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.8e-233 812.4 438 90.4
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 8.1e-233 810.8 642 67.8
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 2.8e-225 785.8 612 64.4
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 6.2e-225 784.6 506 79.2
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 4.8e-193 678.7 405 81.5
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 4.8e-193 678.7 407 84.8
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 2.0e-183 646.7 407 77.9
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 9.4e-181 637.9 352 87.5
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 9.1e-176 621.3 401 77.3
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 2.0e-154 550.4 363 78.5
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.7e-142 510.8 447 62.9
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.4e-131 474.6 682 39.7
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 3.2e-128 463.4 604 42.2
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 6.8e-115 419.1 368 61.7
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 9.2e-112 408.7 683 37.8
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 2.3e-110 404.1 371 59.0
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 9.9e-106 388.7 494 44.3
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.6e-98 364.0 223 83.4
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 6.4e-97 359.4 335 58.5
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.9e-80 304.7 169 89.3
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 5.5e-72 276.6 161 82.6
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.5e-58 231.9 162 66.0
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 6.5e-57 226.5 214 55.1
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 1.1e-53 215.7 205 63.9
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 1.9e-48 198.4 114 88.6
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 2.0e-42 178.3 250 48.0
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 1.1e-40 172.6 182 49.5
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 8.0e-39 166.4 105 75.2
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.3e-38 164.9 263 42.2
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 3.1e-35 154.5 139 60.4
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 5.3e-35 153.7 112 66.1
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.0e-33 149.4 113 67.3
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 1.3e-33 149.1 91 82.4
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.7e-33 148.7 73 95.9
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 6.5e-33 146.7 95 72.6
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 7.2e-32 143.3 83 83.1
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 2.3e-30 138.3 71 83.1
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 7.5e-29 133.3 90 73.3
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.8e-28 131.3 87 72.4
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 3.4e-21 107.8 60 81.7
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 8.6e-17 93.2 47 83.0
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 2.1e-15 88.6 48 81.2
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.4e-14 85.9 58 74.1
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 5.8e-13 80.5 77 54.5
SEGI_19526 Sequoiadendron giganteum HOM05D005018 ORTHO05D043556 8.9e-06 56.6 28 85.7


User provided reference genes

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