Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 5.2e-224 780.8 410 100.0
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.5e-183 646.4 372 84.4
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 4.9e-182 641.3 378 83.1
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 4.3e-178 628.2 360 85.0
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 4.3e-178 628.2 381 80.8
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 6.2e-177 624.4 375 80.5
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 3.1e-176 622.1 342 87.4
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 6.9e-176 620.9 341 87.1
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 6.9e-176 620.9 341 87.1
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 2.0e-175 619.4 392 76.8
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 5.8e-175 617.8 391 77.0
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 5.8e-175 617.8 381 79.3
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 7.6e-175 617.5 354 83.9
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 7.6e-175 617.5 404 77.0
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 9.9e-175 617.1 341 85.6
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.3e-174 616.7 342 84.5
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.7e-174 616.3 385 77.9
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 2.9e-174 615.5 386 79.3
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 4.9e-174 614.8 365 80.5
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 6.4e-174 614.4 377 79.3
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 8.4e-174 614.0 346 84.4
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 1.1e-173 613.6 364 79.9
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.1e-173 613.6 342 84.2
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.1e-173 613.6 444 71.2
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.4e-173 613.2 340 85.9
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.4e-173 613.2 339 85.3
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.4e-173 613.2 355 83.1
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.9e-173 612.8 377 78.8
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 1.9e-173 612.8 367 81.7
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.4e-173 612.5 386 78.5
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 2.4e-173 612.5 376 78.7
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 4.2e-173 611.7 342 85.4
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 5.4e-173 611.3 338 85.5
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.2e-172 610.1 341 84.8
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.2e-172 610.1 371 78.7
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.6e-172 609.8 379 79.7
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.6e-172 609.8 380 78.9
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 2.1e-172 609.4 374 79.4
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.1e-172 609.4 374 78.6
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 2.1e-172 609.4 374 79.4
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 4.6e-172 608.2 377 79.3
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 4.6e-172 608.2 362 80.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.0e-171 607.1 379 78.4
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.0e-171 607.1 363 80.7
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.3e-171 606.7 374 79.4
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.7e-171 606.3 374 79.1
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 1.7e-171 606.3 362 80.9
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 3.0e-171 605.5 377 78.2
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 3.9e-171 605.1 381 77.4
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 5.1e-171 604.7 340 84.1
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 6.6e-171 604.4 348 82.5
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 8.7e-171 604.0 384 75.8
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.7e-171 604.0 375 78.9
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 8.7e-171 604.0 337 85.2
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.5e-170 603.2 342 83.9
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 2.5e-170 602.4 369 78.9
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 3.3e-170 602.1 374 77.8
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 4.3e-170 601.7 375 77.9
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.6e-170 601.3 375 78.7
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 5.6e-170 601.3 349 84.0
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 7.3e-170 600.9 372 77.7
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 9.6e-170 600.5 369 78.6
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 9.6e-170 600.5 355 80.8
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.3e-169 600.1 369 78.9
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.3e-169 600.1 369 79.7
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.6e-169 599.7 341 82.7
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.6e-169 599.7 387 76.2
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 2.1e-169 599.4 372 79.0
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 2.1e-169 599.4 372 79.0
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 2.8e-169 599.0 373 78.3
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 3.6e-169 598.6 369 78.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 4.8e-169 598.2 375 77.6
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 6.2e-169 597.8 371 79.2
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 6.2e-169 597.8 375 78.4
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 1.1e-168 597.0 375 78.1
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.1e-168 597.0 340 83.5
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.4e-168 596.7 373 79.4
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.4e-168 595.9 376 77.7
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 4.0e-168 595.1 370 78.4
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.0e-168 595.1 364 78.8
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 5.3e-168 594.7 371 78.7
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 5.3e-168 594.7 375 77.9
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 5.3e-168 594.7 364 79.1
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.5e-167 593.2 340 82.9
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 2.6e-167 592.4 373 78.0
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 2.6e-167 592.4 373 78.0
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 2.6e-167 592.4 365 78.9
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 3.4e-167 592.0 373 78.0
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 4.5e-167 591.7 346 81.8
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 9.9e-167 590.5 381 75.1
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.3e-166 590.1 308 89.3
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.7e-166 589.7 381 76.4
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.4e-165 586.6 342 81.0
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 2.4e-165 585.9 368 76.1
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 5.4e-165 584.7 344 80.2
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.2e-164 583.6 362 79.6
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 3.0e-163 578.9 379 76.0
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 4.8e-161 571.6 369 75.1
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.1e-161 570.9 343 79.0
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.0e-159 566.2 303 87.1
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 2.6e-159 565.8 343 80.2
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.4e-159 565.5 317 84.9
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.2e-158 562.8 363 76.6
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 4.6e-156 555.1 499 59.1
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 7.9e-156 554.3 350 77.4
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.3e-155 553.5 389 74.0
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 3.0e-155 552.4 529 57.3
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 5.1e-155 551.6 318 83.3
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.6e-153 546.6 352 77.3
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 2.1e-153 546.2 350 77.4
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 2.8e-153 545.8 343 76.4
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 6.2e-153 544.7 368 74.2
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.1e-152 542.3 345 77.1
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.4e-151 538.9 347 73.2
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.9e-150 535.8 342 76.6
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.9e-150 535.8 371 69.5
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.2e-149 532.3 344 71.5
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 7.1e-149 531.2 341 75.7
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 6.1e-148 528.1 551 52.6
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.3e-147 526.9 351 70.7
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 3.7e-145 518.8 303 78.5
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 4.8e-129 465.3 337 66.5
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 4.1e-128 462.2 244 86.1
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.0e-126 457.6 280 77.5
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.8e-123 446.8 309 67.0
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 8.8e-123 444.5 360 60.3
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.6e-122 443.0 381 61.9
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.8e-106 387.9 290 68.6
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 9.1e-104 381.3 352 55.1
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 2.7e-103 379.8 254 74.4
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.6e-100 370.5 212 81.6
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 6.1e-100 368.6 350 53.7
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 4.1e-96 355.9 218 79.4
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 3.2e-88 329.7 291 54.0
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.7e-87 326.6 261 65.1
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.5e-85 320.1 207 73.9
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.3e-73 281.2 185 75.1
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 5.2e-67 259.2 127 93.7
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 2.0e-66 257.3 363 40.2
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.2e-65 253.8 319 43.6
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 3.8e-65 253.1 386 37.3
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.2e-64 250.0 324 42.3
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 7.1e-64 248.8 321 41.7
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.4e-58 229.9 310 40.3
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 6.6e-54 215.7 327 39.4
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.4e-51 208.0 180 61.1
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 5.8e-50 202.6 247 41.7
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.9e-45 187.6 116 81.0
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 6.0e-39 166.0 156 57.1
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 8.5e-25 119.0 56 91.1
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 1.9e-24 117.9 93 65.6
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 7.4e-21 105.9 155 43.9
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.2e-15 88.6 63 73.0
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 1.2e-15 88.6 49 79.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 4.7e-15 86.7 127 41.7
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 1.0e-14 85.5 83 59.0
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 7.4e-13 79.3 65 63.1
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.8e-11 74.7 33 87.9
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 1.1e-08 65.5 31 90.3
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 5.5e-08 63.2 29 82.8
HanXRQChr08g0215991 Helianthus annuus HOM05D033391 ORTHO05D220840 5.2e-06 56.6 27 85.2
HanXRQChr11g0343191 Helianthus annuus HOM05D033391 ORTHO05D220967 8.8e-06 55.8 25 92.0


User provided reference genes

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