Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041395 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 0.0e+00 1159.8 558 100.0
Actinidia30181 Actinidia chinensis HOM05D003438 ORTHO05D004235 2.5e-253 878.6 503 83.5
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 3.9e-238 828.2 500 80.8
Dinv16579 Davidia involucrata HOM05D003438 ORTHO05D004235 5.0e-238 827.8 500 80.4
Rhsim09G0118400 Rhododendron simsii HOM05D003438 ORTHO05D004235 2.0e-234 815.8 562 72.1
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 2.3e-230 802.4 528 74.2
Hma1.2p1_0762F.1_g214440 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 5.8e-226 787.7 495 76.8
GSVIVG01010141001 Vitis vinifera HOM05D003438 ORTHO05D004235 4.1e-224 781.6 498 77.5
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 1.2e-223 780.0 504 75.2
Ciclev10030492m.g Citrus clementina HOM05D003438 ORTHO05D004235 4.0e-219 765.0 503 72.4
Cfa008813 Carpinus fangiana HOM05D003438 ORTHO05D004235 2.2e-217 759.2 499 73.7
DCAR_023734 Daucus carota HOM05D003438 ORTHO05D004235 2.1e-215 752.7 498 72.3
MD16G1052600 Malus domestica HOM05D003438 ORTHO05D004235 5.1e-214 748.0 505 70.9
Prupe.1G298000 Prunus persica HOM05D003438 ORTHO05D004235 5.1e-214 748.0 500 73.2
Nitab4.5_0000149g0230 Nicotiana tabacum HOM05D003438 ORTHO05D004235 2.1e-212 742.7 485 75.5
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 1.5e-210 736.5 499 71.7
Thecc.02G318900 Theobroma cacao HOM05D003438 ORTHO05D004235 1.3e-209 733.4 501 70.5
Potri.010G135500 Populus trichocarpa HOM05D003438 ORTHO05D004235 6.4e-209 731.1 506 70.9
RcHm_v2.0_Chr4g0436931 Rosa chinensis HOM05D003438 ORTHO05D004235 2.1e-207 726.1 499 69.9
ClCG05G023390 Citrullus lanatus HOM05D003438 ORTHO05D004235 2.7e-207 725.7 500 69.8
FAN12G2600 Fragaria x ananassa HOM05D003438 ORTHO05D004235 2.7e-207 725.7 500 70.2
Peaxi162Scf00396g01321 Petunia axillaris HOM05D003438 ORTHO05D004235 1.0e-206 723.8 484 72.9
FAN07G2974 Fragaria x ananassa HOM05D003438 ORTHO05D004235 2.3e-206 722.6 505 69.5
FvH4_4g28800 Fragaria vesca HOM05D003438 ORTHO05D004235 6.6e-206 721.1 500 69.8
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 8.7e-206 720.7 500 69.0
MELO3C012178.2 Cucumis melo HOM05D003438 ORTHO05D004235 1.5e-205 719.9 500 69.4
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 2.5e-205 719.2 500 68.6
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 4.3e-205 718.4 500 69.4
Atru.chr11.1518 Acer truncatum HOM05D003438 ORTHO05D004235 7.3e-205 717.6 506 70.0
Sabra10G0104100 Salix brachista HOM05D003438 ORTHO05D004235 7.3e-205 717.6 539 66.8
Lalb_Chr16g0392021 Lupinus albus HOM05D003438 ORTHO05D004235 1.3e-204 716.8 518 67.6
COL.COLO4_27762 Corchorus olitorius HOM05D003438 ORTHO05D004235 1.6e-204 716.5 492 70.3
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 6.9e-203 711.1 498 69.9
TWI75G0189 Tripterygium wilfordii HOM05D003438 ORTHO05D004235 1.2e-202 710.3 505 70.7
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 1.5e-202 709.9 504 68.7
CsaV3_5G033620 Cucumis sativus L. HOM05D003438 ORTHO05D004235 5.8e-202 708.0 499 68.3
Lj4g0011234 Lotus japonicus HOM05D003438 ORTHO05D004235 2.9e-201 705.7 504 67.7
Nn4g23588 Nelumbo nucifera HOM05D003438 ORTHO05D004235 8.4e-201 704.1 499 69.3
Sopen04g001190 Solanum pennellii HOM05D003438 ORTHO05D004235 1.4e-200 703.4 502 70.1
Duzib251G0072 Durio zibethinus HOM05D003438 ORTHO05D004235 1.9e-200 703.0 501 68.9
Sc04g0007220 Simmondsia chinensis HOM05D003438 ORTHO05D004235 7.1e-200 701.0 503 68.2
EL10Ac6g14628 Beta vulgaris HOM05D003438 ORTHO05D004235 9.3e-200 700.7 484 69.8
Gorai.005G148400 Gossypium raimondii HOM05D003438 ORTHO05D004235 7.8e-199 697.6 501 66.9
PSO017G4740 Papaver somniferum HOM05D003438 ORTHO05D004235 7.8e-199 697.6 500 68.8
Cc11_g11320 Coffea canephora HOM05D003438 ORTHO05D004235 2.3e-198 696.0 516 66.1
Haze_11830 Corylus avellana HOM05D003438 ORTHO05D004235 3.9e-198 695.3 471 72.2
ECA234G3211 Erigeron canadensis HOM05D003438 ORTHO05D004235 4.3e-197 691.8 505 66.9
FAN17G0827 Fragaria x ananassa HOM05D003438 ORTHO05D004235 5.6e-197 691.4 562 61.9
Ah.12g061010 Amaranthus hybridus HOM05D003438 ORTHO05D004235 1.6e-196 689.9 504 67.1
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 2.8e-196 689.1 504 66.9
THA.LOC104821983 Tarenaya hassleriana HOM05D003438 ORTHO05D004235 3.6e-196 688.7 498 67.7
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 8.1e-196 687.6 497 65.8
Psat4g113480 Pisum sativum HOM05D003438 ORTHO05D004235 8.1e-196 687.6 510 66.1
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 1.8e-195 686.4 506 65.2
Nitab4.5_0000591g0100 Nicotiana tabacum HOM05D003438 ORTHO05D004235 2.4e-195 686.0 480 71.7
Manes.14G092500 Manihot esculenta HOM05D003438 ORTHO05D004235 4.0e-195 685.3 451 74.3
VMungo1080G0040 Vigna mungo HOM05D003438 ORTHO05D000002 4.0e-195 685.3 505 65.3
AT1G68890 Arabidopsis thaliana HOM05D003438 ORTHO05D004235 7.6e-194 681.0 498 65.9
arahy.Tifrunner.gnm1.ann1.KJ79M0 Arachis hypogaea HOM05D003438 ORTHO05D004235 7.6e-194 681.0 499 66.9
Thhalv10017999m.g Eutrema salsugineum HOM05D003438 ORTHO05D004235 7.6e-194 681.0 487 67.8
HanXRQChr16g0528311 Helianthus annuus HOM05D003438 ORTHO05D004235 7.6e-194 681.0 507 66.9
arahy.Tifrunner.gnm1.ann1.2XHE7W Arachis hypogaea HOM05D003438 ORTHO05D004235 2.9e-193 679.1 504 65.9
CARHR061750 Cardamine hirsuta HOM05D003438 ORTHO05D004235 5.4e-192 674.9 499 65.9
A02p15460 Brassica napus HOM05D003438 ORTHO05D004235 9.3e-192 674.1 499 65.7
BraA02t06607Z Brassica rapa HOM05D003438 ORTHO05D004235 2.1e-191 672.9 499 65.5
BolC2t08622H Brassica oleracea HOM05D003438 ORTHO05D004235 3.9e-190 668.7 489 67.3
Eucgr.G02402 Eucalyptus grandis HOM05D003438 ORTHO05D004235 6.7e-190 667.9 499 65.3
Sp5g24020 Schrenkiella parvula HOM05D003438 ORTHO05D004235 1.3e-188 663.7 484 67.1
SalBow8G3833 Salvia bowleyana HOM05D003438 ORTHO05D004235 2.8e-188 662.5 484 65.7
C02p25570 Brassica napus HOM05D003438 ORTHO05D004235 3.1e-187 659.1 489 66.9
PGR119G1138 Punica granatum HOM05D003438 ORTHO05D004235 4.0e-187 658.7 500 63.0
ATR0691G173 Amborella trichopoda HOM05D003438 ORTHO05D004235 5.3e-187 658.3 502 65.1
Aa31sc12G150 Aethionema arabicum HOM05D003438 ORTHO05D004235 1.0e-185 654.1 498 64.5
BcaB05g24430 Brassica carinata HOM05D003438 ORTHO05D004235 1.9e-184 649.8 499 64.9
Migut.L01140 Erythranthe guttata HOM05D003438 ORTHO05D004235 3.9e-182 642.1 503 61.6
Lsat_1_v5_gn_4_21341 Lactuca sativa HOM05D003438 ORTHO05D004235 3.9e-182 642.1 499 65.5
SEGI_27375 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 1.9e-173 613.2 504 59.5
Hund25139 Selenicereus undatus HOM05D003438 ORTHO05D004235 1.0e-166 590.9 499 60.9
PSO478G2917 Papaver somniferum HOM05D003438 ORTHO05D004235 2.0e-157 560.1 499 58.9
AUR62007840 Chenopodium quinoa HOM05D003438 ORTHO05D004235 2.7e-151 539.7 504 56.7
Zm00001eb245360 Zea mays HOM05D003438 ORTHO05D004235 8.0e-151 538.1 484 56.0
AUR62003034 Chenopodium quinoa HOM05D003438 ORTHO05D004235 2.6e-149 533.1 484 58.9
SGA_v2.0_scaffold16G07841 Striga asiatica HOM05D003438 ORTHO05D004235 4.1e-147 525.8 499 53.7
vmacro10455 Vaccinium macrocarpon HOM05D003438 ORTHO05D004235 1.2e-146 524.2 302 81.1
HPP92_019427 Vanilla planifolia HOM05D003438 ORTHO05D004235 2.6e-146 523.1 398 63.3
QL03p047172 Quercus lobata HOM05D003438 ORTHO05D004235 7.7e-146 521.5 316 77.5
SEGI_34733 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 1.6e-143 513.8 401 61.6
SMO270G0066 Selaginella moellendorffii HOM05D003438 ORTHO05D004235 3.6e-143 512.7 491 53.0
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 2.0e-141 506.9 487 53.4
MBI14_g11750_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D004235 5.7e-141 505.4 372 66.4
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 1.3e-140 504.2 490 53.1
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 1.0e-137 494.6 502 52.8
Ca_22511_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 8.0e-135 485.0 600 46.3
CAN.G263.2 Capsicum annuum HOM05D003438 ORTHO05D004235 2.7e-130 469.9 344 67.7
Carub.0002s1551 Capsella rubella HOM05D003438 ORTHO05D004235 8.6e-129 464.9 333 67.3
HPP92_019404 Vanilla planifolia HOM05D003438 ORTHO05D004235 1.2e-127 461.1 450 54.0
Solyc04g005190.2 Solanum lycopersicum HOM05D003438 ORTHO05D004235 4.7e-127 459.1 344 66.6
CDE02G1987 Ceratophyllum demersum HOM05D003438 ORTHO05D004235 4.9e-116 422.5 343 60.6
Glyma.17G262200 Glycine max HOM05D003438 ORTHO05D004235 1.9e-99 367.5 265 64.2
Rhsim13G0143500 Rhododendron simsii HOM05D003438 ORTHO05D004235 9.9e-93 345.1 262 66.0
Gohir.A03G107400 Gossypium hirsutum HOM05D003438 ORTHO05D004235 8.4e-92 342.0 267 62.5
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 1.1e-80 305.1 513 39.2
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 2.9e-76 290.4 541 36.6
Cre16.g659050 Chlamydomonas reinhardtii HOM05D003438 ORTHO05D004235 7.1e-75 285.8 643 32.7
Hma1.2p1_0762F.1_g214450 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 3.3e-64 250.4 165 69.1
QL03p047161 Quercus lobata HOM05D003438 ORTHO05D000004 1.5e-61 241.5 189 62.4
HPP92_019426 Vanilla planifolia HOM05D003438 ORTHO05D004235 1.2e-53 215.3 176 58.0
unitig_699.g19901 Utricularia gibba HOM05D003438 ORTHO05D004235 3.7e-47 193.7 283 42.0
Hma1.2p1_0021F.1_g014340 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 1.3e-39 168.7 94 89.4
Nn4g23587 Nelumbo nucifera HOM05D003438 ORTHO05D004235 2.6e-37 161.0 100 77.0
Cpa.g.sc570.4 Carica papaya HOM05D003438 ORTHO05D004235 1.7e-36 158.3 100 74.0
Glyma.06G325402 Glycine max HOM05D003438 ORTHO05D004235 2.9e-36 157.5 101 73.3
Glyma.06G325566 Glycine max HOM05D003438 ORTHO05D004235 2.9e-36 157.5 101 73.3
Glyma.08G368001 Glycine max HOM05D003438 ORTHO05D004235 3.8e-36 157.1 102 73.5
Glyma.13G107000 Glycine max HOM05D003438 ORTHO05D004235 8.5e-36 156.0 101 72.3
Glyma.03G011400 Glycine max HOM05D003438 ORTHO05D004235 2.5e-35 154.5 116 64.7
Carub.0002s1552 Capsella rubella HOM05D003438 ORTHO05D004235 5.0e-28 130.2 98 64.3
CBR_g48051 Chara braunii HOM05D003553 ORTHO05D005072 6.5e-28 129.8 86 69.8
Glyma.10G000050 Glycine max HOM05D003438 ORTHO05D004235 1.1e-22 112.5 122 53.3
Glyma.01G000248 Glycine max HOM05D003438 ORTHO05D004235 5.4e-22 110.2 67 79.1
Glyma.08G368201 Glycine max HOM05D003438 ORTHO05D004235 2.7e-21 107.8 80 66.2
Glyma.15G277066 Glycine max HOM05D003438 ORTHO05D004235 1.0e-20 105.9 82 65.9
CAN.G263.1 Capsicum annuum HOM05D003438 ORTHO05D004235 1.7e-20 105.1 61 85.2
CBR_g48055 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-19 100.1 195 35.9
HPP92_019425 Vanilla planifolia HOM05D000987 ORTHO05D000831 7.0e-14 83.2 114 43.0
Gohir.D02G132466 Gossypium hirsutum HOM05D003438 ORTHO05D004235 9.2e-14 82.8 64 62.5
MBI07_g39450_MAGBIO Magnolia biondii HOM05D002723 ORTHO05D003240 9.8e-08 62.8 162 29.0
Ciclev10007130m.g Citrus clementina HOM05D002723 ORTHO05D003240 3.7e-07 60.8 187 28.3
Manes.06G120100 Manihot esculenta HOM05D002723 ORTHO05D003240 3.7e-07 60.8 162 30.9
VMungo1309G1476 Vigna mungo HOM05D002723 ORTHO05D003240 3.7e-07 60.8 162 28.4
MBI16_g26408_MAGBIO Magnolia biondii HOM05D002723 ORTHO05D003240 4.9e-07 60.5 162 28.4
A05p03300 Brassica napus HOM05D002723 ORTHO05D003240 1.8e-06 58.5 179 27.9
BraA05t19319Z Brassica rapa HOM05D002723 ORTHO05D003240 1.8e-06 58.5 179 27.9
AUR62003521 Chenopodium quinoa HOM05D002723 ORTHO05D003240 1.8e-06 58.5 169 27.8
Medtr2g027220 Medicago truncatula HOM05D002723 ORTHO05D003240 1.8e-06 58.5 162 27.8
Os04g0389800 Oryza sativa ssp. japonica HOM05D002723 ORTHO05D003240 1.8e-06 58.5 162 26.5
Lj1g0017329 Lotus japonicus HOM05D002723 ORTHO05D003240 3.2e-06 57.8 162 30.2
CiPaw.11G006500 Carya illinoinensis HOM05D002723 ORTHO05D003240 5.4e-06 57.0 162 29.6
Glyma.13G241000 Glycine max HOM05D002723 ORTHO05D003240 5.4e-06 57.0 162 30.2
AL5G28010 Arabidopsis lyrata HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 26.5
AT3G48560 Arabidopsis thaliana HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 26.5
BcaB05g23006 Brassica carinata HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 29.0
BcaC09g49880 Brassica carinata HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 29.0
A01p25340 Brassica napus HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 29.0
C01p32280 Brassica napus HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 29.0
BolC1t03114H Brassica oleracea HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 29.0
BraA01t02444Z Brassica rapa HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 29.0
Carub.0005s1475 Capsella rubella HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 28.4
CARHR157360 Cardamine hirsuta HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 26.5
Ca_00309_v3 Cicer arietinum L. HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 30.2
Ca_00314_v3 Cicer arietinum L. HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 30.2
Glyma.15G072500 Glycine max HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 30.2
Phvul.006G187400 Phaseolus vulgaris HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 30.2
Psat5g051480 Pisum sativum HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 28.4
Sp5g13420 Schrenkiella parvula HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 27.8
THA.LOC104821520 Tarenaya hassleriana HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 26.5
VMungo0540G1422 Vigna mungo HOM05D002723 ORTHO05D003240 7.0e-06 56.6 162 30.2
AUR62017833 Chenopodium quinoa HOM05D002723 ORTHO05D003240 9.2e-06 56.2 169 27.8
Thhalv10010177m.g Eutrema salsugineum HOM05D002723 ORTHO05D003240 9.2e-06 56.2 162 26.5
Lj6g0017314 Lotus japonicus HOM05D002723 ORTHO05D003240 9.2e-06 56.2 162 30.2
SMO298G0030 Selaginella moellendorffii HOM05D002723 ORTHO05D003240 9.2e-06 56.2 162 25.3


User provided reference genes

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