Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 0.0e+00 1227.6 616 100.0
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 0.0e+00 1223.0 616 99.5
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 0.0e+00 1109.4 622 89.2
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 0.0e+00 1097.8 617 88.7
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 0.0e+00 1096.3 616 87.8
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 0.0e+00 1089.7 627 87.7
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.5e-309 1064.3 616 85.2
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 4.6e-309 1063.9 621 85.0
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 7.3e-307 1056.6 618 84.6
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 9.6e-307 1056.2 617 84.8
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 4.8e-306 1053.9 617 85.3
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.8e-305 1052.0 618 84.1
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 2.4e-305 1051.6 610 86.2
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 9.0e-305 1049.7 616 83.9
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 2.6e-304 1048.1 616 84.6
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 7.6e-304 1046.6 632 83.2
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 2.1e-301 1038.5 619 84.2
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.0e-300 1036.2 616 82.1
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.8e-300 1035.4 618 83.7
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.8e-300 1035.4 615 83.7
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 3.0e-300 1034.6 621 82.9
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.5e-299 1032.3 622 81.4
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 7.4e-299 1030.0 593 84.5
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 1.3e-298 1029.2 623 83.1
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 8.1e-298 1026.5 629 81.6
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 5.3e-297 1023.8 622 82.5
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.3e-297 1023.8 617 81.7
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 5.3e-297 1023.8 594 84.2
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 5.3e-297 1023.8 605 84.5
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 6.9e-297 1023.5 622 80.9
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 6.9e-297 1023.5 629 82.4
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 9.0e-297 1023.1 622 81.4
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 7.6e-296 1020.0 620 82.1
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.2e-295 1018.5 618 81.2
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 8.4e-295 1016.5 616 81.3
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 3.2e-294 1014.6 630 81.0
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 3.2e-294 1014.6 616 81.8
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 7.1e-294 1013.4 616 81.8
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 9.3e-294 1013.1 620 80.8
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 9.3e-294 1013.1 619 82.7
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 9.3e-294 1013.1 649 80.0
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 9.3e-294 1013.1 622 80.1
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 2.7e-293 1011.5 616 81.5
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 1.8e-292 1008.8 616 80.7
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 5.1e-292 1007.3 616 81.0
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 5.1e-292 1007.3 616 81.0
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 8.7e-292 1006.5 633 80.4
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.1e-291 1006.1 615 80.5
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 616 80.4
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 2.5e-291 1005.0 618 81.4
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 618 80.4
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 620 80.5
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 4.3e-291 1004.2 616 81.2
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 5.7e-291 1003.8 619 79.6
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 9.6e-291 1003.0 655 77.9
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 627 80.7
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 603 81.8
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.2e-290 1000.0 616 79.7
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 8.2e-290 1000.0 618 79.9
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.8e-289 998.8 616 79.7
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.4e-289 998.4 635 79.8
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 4.1e-289 997.7 616 79.7
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 4.1e-289 997.7 616 79.7
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 5.3e-289 997.3 621 79.9
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 1.2e-288 996.1 616 80.2
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 1.2e-288 996.1 616 79.9
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.2e-288 996.1 616 79.9
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 2.0e-288 995.3 622 79.4
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.5e-288 994.2 621 80.0
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.5e-288 994.2 628 80.1
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 4.5e-288 994.2 558 85.5
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 5.8e-288 993.8 599 81.8
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 5.8e-288 993.8 558 85.7
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.0e-287 993.0 619 80.1
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.7e-287 992.3 616 79.5
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.7e-287 992.3 616 79.5
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.2e-287 991.9 604 81.3
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 2.2e-287 991.9 616 79.7
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.2e-287 991.9 616 79.7
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.2e-287 991.9 693 74.9
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 2.9e-287 991.5 619 79.6
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 2.9e-287 991.5 616 79.7
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.9e-287 991.5 617 78.6
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.8e-287 991.1 616 79.4
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 6.5e-287 990.3 616 79.5
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 8.4e-287 989.9 616 78.9
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 2.5e-286 988.4 624 79.2
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 2.5e-286 988.4 621 79.5
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 2.5e-286 988.4 616 79.4
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.2e-286 988.0 591 82.2
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 4.2e-286 987.6 617 78.8
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 5.5e-286 987.3 618 79.3
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 5.5e-286 987.3 606 79.9
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.2e-285 986.1 618 79.4
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.2e-285 986.1 618 79.4
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.2e-285 986.1 616 79.2
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 2.1e-285 985.3 595 81.8
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.1e-285 985.3 616 79.2
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 2.7e-285 984.9 620 79.4
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 6.1e-285 983.8 616 79.2
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.0e-284 983.0 619 79.2
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.0e-284 983.0 617 78.9
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 3.0e-284 981.5 601 81.4
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 3.9e-284 981.1 616 78.7
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 5.1e-284 980.7 630 77.8
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 4.8e-282 974.2 650 75.7
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.0e-279 966.5 527 88.2
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.8e-279 964.5 634 75.9
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 3.2e-278 961.4 626 78.9
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.7e-277 958.4 623 77.4
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.3e-274 949.5 572 80.1
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 2.3e-268 928.7 620 74.2
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.0e-267 925.6 633 75.8
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 8.2e-266 920.2 618 75.1
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.4e-265 918.7 608 74.0
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 9.1e-265 916.8 539 83.7
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.7e-264 913.7 564 80.1
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 5.0e-263 911.0 557 77.4
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.1e-261 905.6 627 75.0
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 5.7e-259 897.5 575 74.6
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.1e-257 891.3 527 82.0
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.6e-245 851.7 625 69.1
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.9e-240 834.3 620 69.7
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 4.0e-236 821.6 561 70.2
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 3.7e-234 815.1 590 67.3
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 1.4e-228 796.6 490 80.8
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.3e-226 790.0 490 78.4
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 9.5e-222 773.9 433 86.6
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 8.1e-221 770.8 489 76.9
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.5e-219 766.5 490 78.4
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 2.9e-218 762.3 544 67.1
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.3e-214 748.8 490 77.1
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.6e-213 746.5 426 85.0
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 8.4e-210 734.2 433 81.3
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.1e-208 729.6 438 81.1
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.7e-200 702.6 565 60.4
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.0e-199 700.7 403 85.9
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.0e-175 620.9 433 72.3
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.0e-167 594.3 600 51.3
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.5e-161 573.2 312 88.8
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 2.6e-147 526.6 488 61.1
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 7.0e-132 475.3 340 73.5
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 7.5e-126 455.3 287 79.4
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 9.2e-108 395.2 277 69.3
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 2.0e-94 350.9 216 77.3
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 1.9e-81 307.8 210 79.0
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 4.8e-80 303.1 212 75.5
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 6.7e-74 282.7 557 33.0
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 4.9e-69 266.5 150 84.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 1.1e-60 238.8 131 84.7
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 6.0e-59 233.0 133 79.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 8.2e-56 222.6 126 83.3
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 2.4e-55 221.1 184 66.8
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 5.0e-53 213.4 116 91.4
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 6.5e-53 213.0 109 92.7
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.3e-50 205.3 115 82.6
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 3.9e-50 203.8 114 80.7
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.2e-45 188.0 140 67.1
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 3.8e-45 187.2 115 77.4
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.0e-45 186.8 105 81.0
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 1.2e-43 182.2 251 47.8
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 5.7e-41 173.3 138 69.6
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 1.4e-36 158.7 234 46.6
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.6e-35 155.2 112 71.4
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 8.5e-29 132.9 116 62.1
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.4e-26 125.6 61 96.7
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 2.6e-25 121.3 70 75.7
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 1.3e-21 109.0 56 92.9
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.1e-20 105.9 212 35.4
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.7e-16 92.0 184 31.5
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.8e-16 91.3 89 60.7
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 3.1e-15 87.8 67 62.7
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 6.5e-13 80.1 94 55.3


User provided reference genes

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