Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.5e-37 158.3 83 100.0
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.9e-32 142.1 82 86.6
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.9e-32 142.1 82 85.4
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 2.5e-32 141.7 82 87.8
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 3.2e-32 141.4 82 87.8
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 5.5e-32 140.6 80 88.8
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 9.4e-32 139.8 80 87.5
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.1e-31 138.7 82 84.1
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 2.1e-31 138.7 82 84.1
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 2.1e-31 138.7 82 84.1
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 2.7e-31 138.3 82 85.4
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.7e-31 138.3 82 87.8
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 3.6e-31 137.9 82 84.1
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 4.7e-31 137.5 80 85.0
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 6.1e-31 137.1 80 85.0
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 7.9e-31 136.7 82 81.7
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.0e-30 136.3 80 85.0
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.0e-30 136.3 80 83.8
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 1.4e-30 136.0 82 81.7
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.4e-30 136.0 80 86.2
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.4e-30 136.0 80 83.8
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 1.8e-30 135.6 80 86.2
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.8e-30 135.6 82 82.9
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 3.0e-30 134.8 80 83.8
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 3.0e-30 134.8 82 82.9
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 3.0e-30 134.8 82 81.7
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 3.0e-30 134.8 82 80.5
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 3.0e-30 134.8 80 85.0
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 3.9e-30 134.4 80 83.8
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 5.1e-30 134.0 82 82.9
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 5.1e-30 134.0 80 81.2
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 6.7e-30 133.7 82 82.9
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 6.7e-30 133.7 82 82.9
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 8.8e-30 133.3 80 81.2
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 8.8e-30 133.3 82 81.7
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 8.8e-30 133.3 82 81.7
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 8.8e-30 133.3 82 82.9
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.1e-29 132.9 80 82.5
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.5e-29 132.5 82 79.3
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 1.5e-29 132.5 80 82.5
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.5e-29 132.5 82 80.5
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 2.0e-29 132.1 80 82.5
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 2.0e-29 132.1 80 82.5
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 2.0e-29 132.1 80 82.5
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 2.0e-29 132.1 80 82.5
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 2.0e-29 132.1 82 82.9
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 2.0e-29 132.1 82 80.5
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 2.0e-29 132.1 82 76.8
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 2.6e-29 131.7 82 78.0
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 2.6e-29 131.7 82 80.5
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 2.6e-29 131.7 80 83.8
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 2.6e-29 131.7 82 79.3
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 3.3e-29 131.3 80 82.5
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 3.3e-29 131.3 80 82.5
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 3.3e-29 131.3 82 80.5
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 3.3e-29 131.3 82 79.3
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 3.3e-29 131.3 82 79.3
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 4.4e-29 131.0 80 81.2
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 4.4e-29 131.0 80 82.5
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 4.4e-29 131.0 80 82.5
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 4.4e-29 131.0 82 80.5
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 4.4e-29 131.0 82 80.5
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 4.4e-29 131.0 82 80.5
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 4.4e-29 131.0 80 78.8
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 5.7e-29 130.6 80 81.2
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 7.4e-29 130.2 82 78.0
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 7.4e-29 130.2 82 81.7
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 7.4e-29 130.2 79 81.0
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 7.4e-29 130.2 82 75.6
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 9.7e-29 129.8 80 80.0
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 9.7e-29 129.8 82 75.6
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 9.7e-29 129.8 82 75.6
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.3e-28 129.4 80 77.5
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.3e-28 129.4 82 76.8
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 2.2e-28 128.6 82 78.0
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.2e-28 128.6 82 74.4
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 2.2e-28 128.6 82 75.6
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 2.8e-28 128.3 82 75.6
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.8e-28 128.3 80 76.2
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.8e-28 128.3 80 76.2
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 2.8e-28 128.3 80 80.0
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 2.8e-28 128.3 82 76.8
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 3.7e-28 127.9 82 76.8
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 4.8e-28 127.5 82 74.4
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 4.8e-28 127.5 82 80.5
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 4.8e-28 127.5 82 80.5
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 6.3e-28 127.1 80 75.0
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 6.3e-28 127.1 82 78.0
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 6.3e-28 127.1 82 76.8
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 8.2e-28 126.7 79 79.7
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 8.2e-28 126.7 82 76.8
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.2e-28 126.7 77 80.5
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.1e-27 126.3 82 76.8
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.1e-27 126.3 82 76.8
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.1e-27 126.3 82 76.8
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.1e-27 126.3 80 76.2
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 1.1e-27 126.3 82 74.4
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 1.4e-27 125.9 82 73.2
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.4e-27 125.9 80 76.2
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.4e-27 125.2 82 72.0
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 2.4e-27 125.2 82 75.6
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 2.4e-27 125.2 82 78.0
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.4e-27 125.2 82 79.3
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 3.1e-27 124.8 82 74.4
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.1e-27 124.8 82 74.4
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 4.1e-27 124.4 80 76.2
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 5.3e-27 124.0 80 75.0
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 9.1e-27 123.2 82 72.0
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 9.1e-27 123.2 82 74.4
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 9.1e-27 123.2 82 75.6
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 1.2e-26 122.9 82 73.2
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 2.0e-26 122.1 82 76.8
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 2.0e-26 122.1 82 74.4
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.6e-26 121.7 89 69.7
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 2.6e-26 121.7 82 72.0
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.6e-26 121.7 82 76.8
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.6e-26 121.7 82 73.2
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 3.5e-26 121.3 82 70.7
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 3.5e-26 121.3 82 70.7
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 3.5e-26 121.3 82 72.0
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 5.9e-26 120.6 82 74.4
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 5.9e-26 120.6 82 70.7
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 7.7e-26 120.2 82 73.2
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 1.3e-25 119.4 105 61.9
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 1.3e-25 119.4 82 69.5
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.3e-25 119.4 82 69.5
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 2.2e-25 118.6 82 74.4
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 3.8e-25 117.9 82 74.4
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 1.5e-24 115.9 78 75.6
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.5e-24 115.2 84 72.6
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 9.4e-24 113.2 111 56.8
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 4.4e-21 104.4 91 61.5
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.2e-20 102.1 109 55.0
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.8e-19 99.0 87 63.2
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 9.1e-19 96.7 88 56.8
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 1.9e-16 89.0 49 89.8
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 5.5e-16 87.4 55 80.0
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.4e-14 82.8 50 78.0
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 1.8e-14 82.4 66 62.1
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 3.0e-14 81.6 97 48.5
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 4.0e-14 81.3 82 53.7
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.2e-13 79.7 48 77.1
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 1.3e-12 76.3 83 48.2
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 4.8e-12 74.3 62 56.5
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.1e-11 73.2 92 44.6
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.4e-11 72.8 48 75.0
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.3e-09 66.2 40 75.0
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.7e-09 65.9 44 72.7
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 1.7e-09 65.9 44 65.9
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 2.9e-09 65.1 63 55.6
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 3.6e-07 58.2 67 43.3
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 8.0e-07 57.0 64 51.6


User provided reference genes

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