Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040169 Camellia sinensis var. sinensis HOM05D003509 ORTHO05D004205 6.9e-56 220.3 105 100.0
CSS0014940 Camellia sinensis var. sinensis HOM05D003509 ORTHO05D004205 5.7e-26 120.9 59 98.3
Rhsim10G0162600 Rhododendron simsii HOM05D003509 ORTHO05D004205 5.3e-24 114.4 59 93.2
vmacro12953 Vaccinium macrocarpon HOM05D003509 ORTHO05D004205 5.3e-24 114.4 59 93.2
Actinidia36591 Actinidia chinensis HOM05D003509 ORTHO05D004205 3.5e-23 111.7 59 89.8
Dinv21913 Davidia involucrata HOM05D003509 ORTHO05D004205 3.5e-23 111.7 59 88.1
Hma1.2p1_0308F.1_g120180 Hydrangea macrophylla HOM05D003509 ORTHO05D004205 3.5e-23 111.7 58 89.7
Dinv16288 Davidia involucrata HOM05D003509 ORTHO05D004205 4.5e-23 111.3 58 87.9
HanXRQChr03g0087081 Helianthus annuus HOM05D003509 ORTHO05D004205 5.9e-23 110.9 75 76.0
CiPaw.03G141400 Carya illinoinensis HOM05D003509 ORTHO05D004205 1.0e-22 110.2 59 88.1
Lsat_1_v5_gn_8_1020 Lactuca sativa HOM05D003509 ORTHO05D004205 1.0e-22 110.2 75 76.0
CANSAT54G2466 Cannabis sativa HOM05D003509 ORTHO05D004205 1.3e-22 109.8 59 88.1
Cc07_g15310 Coffea canephora HOM05D003509 ORTHO05D004205 1.3e-22 109.8 75 77.3
Zm00001eb140100 Zea mays HOM05D003509 ORTHO05D004205 1.3e-22 109.8 59 86.4
Eucgr.H04794 Eucalyptus grandis HOM05D003509 ORTHO05D004205 1.7e-22 109.4 59 88.1
ECA233G3468 Erigeron canadensis HOM05D003509 ORTHO05D004205 2.2e-22 109.0 75 74.7
PGR102G2959 Punica granatum HOM05D003509 ORTHO05D004205 2.2e-22 109.0 58 87.9
CiPaw.04G098900 Carya illinoinensis HOM05D003509 ORTHO05D004205 2.9e-22 108.6 59 86.4
Nitab4.5_0000104g0130 Nicotiana tabacum HOM05D003509 ORTHO05D004205 2.9e-22 108.6 72 77.8
Nitab4.5_0006517g0010 Nicotiana tabacum HOM05D003509 ORTHO05D004205 2.9e-22 108.6 72 77.8
CDE02G0851 Ceratophyllum demersum HOM05D003509 ORTHO05D004205 3.8e-22 108.2 74 71.6
Peaxi162Scf00212g01215 Petunia axillaris HOM05D003509 ORTHO05D004205 3.8e-22 108.2 72 77.8
FvH4_1g25840 Fragaria vesca HOM05D003509 ORTHO05D004205 5.0e-22 107.8 75 74.7
FAN19G1703 Fragaria x ananassa HOM05D003509 ORTHO05D004205 5.0e-22 107.8 75 74.7
Lj6g0023245 Lotus japonicus HOM05D003509 ORTHO05D004205 5.0e-22 107.8 75 74.7
Oeu002402.1 Olea europaea HOM05D003509 ORTHO05D004205 5.0e-22 107.8 59 84.7
PSO017G5498 Papaver somniferum HOM05D003509 ORTHO05D004205 5.0e-22 107.8 59 84.7
PSO170G3704 Papaver somniferum HOM05D003509 ORTHO05D004205 5.0e-22 107.8 59 84.7
VMungo1383G3521 Vigna mungo HOM05D003509 ORTHO05D004205 5.0e-22 107.8 59 86.4
Cfa002672 Carpinus fangiana HOM05D003509 ORTHO05D004205 6.5e-22 107.5 59 86.4
ClCG10G008750 Citrullus lanatus HOM05D003509 ORTHO05D004205 6.5e-22 107.5 59 84.7
Haze_24942 Corylus avellana HOM05D003509 ORTHO05D004205 6.5e-22 107.5 59 86.4
CsaV3_4G008940 Cucumis sativus L. HOM05D003509 ORTHO05D004205 6.5e-22 107.5 59 84.7
FAN28G0272 Fragaria x ananassa HOM05D003509 ORTHO05D004205 6.5e-22 107.5 75 74.7
Os01g0966100 Oryza sativa ssp. japonica HOM05D003509 ORTHO05D004205 6.5e-22 107.5 59 83.1
Potri.005G076200 Populus trichocarpa HOM05D003509 ORTHO05D004205 6.5e-22 107.5 75 74.7
RcHm_v2.0_Chr3g0484971 Rosa chinensis HOM05D003509 ORTHO05D004205 6.5e-22 107.5 75 74.7
Sed0020843 Sechium edule HOM05D003509 ORTHO05D004205 6.5e-22 107.5 59 84.7
arahy.Tifrunner.gnm1.ann1.41RR18 Arachis hypogaea HOM05D003509 ORTHO05D004205 8.5e-22 107.1 75 74.7
arahy.Tifrunner.gnm1.ann1.X4FXIQ Arachis hypogaea HOM05D003509 ORTHO05D004205 8.5e-22 107.1 75 74.7
AUR62024498 Chenopodium quinoa HOM05D003509 ORTHO05D004205 8.5e-22 107.1 94 61.7
MELO3C018990.2 Cucumis melo HOM05D003509 ORTHO05D004205 8.5e-22 107.1 59 84.7
Glyma.18G017600 Glycine max HOM05D003509 ORTHO05D004205 8.5e-22 107.1 59 86.4
Os05g0107600 Oryza sativa ssp. japonica HOM05D003509 ORTHO05D004205 8.5e-22 107.1 91 61.5
Potri.007G092200 Populus trichocarpa HOM05D003509 ORTHO05D004205 8.5e-22 107.1 75 74.7
Solyc04g055120.3 Solanum lycopersicum HOM05D003509 ORTHO05D004205 8.5e-22 107.1 72 76.4
Sopen04g024980 Solanum pennellii HOM05D003509 ORTHO05D004205 8.5e-22 107.1 72 76.4
Aqoxy1G03668 Aquilegia oxysepala HOM05D003509 ORTHO05D004205 1.1e-21 106.7 59 84.7
CAN.G441.2 Capsicum annuum HOM05D003509 ORTHO05D004205 1.1e-21 106.7 72 76.4
AUR62026083 Chenopodium quinoa HOM05D003509 ORTHO05D004205 1.1e-21 106.7 75 72.0
SalBow5G0975 Salvia bowleyana HOM05D003509 ORTHO05D004205 1.1e-21 106.7 59 83.1
unitig_899.g15007 Utricularia gibba HOM05D003509 ORTHO05D004205 1.1e-21 106.7 75 73.3
ECA233G0491 Erigeron canadensis HOM05D003509 ORTHO05D004205 1.5e-21 106.3 59 84.7
Prupe.2G084100 Prunus persica HOM05D003509 ORTHO05D004205 1.5e-21 106.3 75 73.3
Sabra05G0062800 Salix brachista HOM05D003509 ORTHO05D004205 1.5e-21 106.3 75 74.7
Zm00001eb356090 Zea mays HOM05D003509 ORTHO05D004205 1.5e-21 106.3 74 70.3
MSTRG.3782 Avicennia marina HOM05D003509 ORTHO05D004205 1.9e-21 105.9 59 84.7
Nn4g24883 Nelumbo nucifera HOM05D003509 ORTHO05D004205 1.9e-21 105.9 59 83.1
Phvul.001G251800 Phaseolus vulgaris HOM05D003509 ORTHO05D004205 1.9e-21 105.9 59 84.7
Duzib147G0762 Durio zibethinus HOM05D003509 ORTHO05D004205 2.5e-21 105.5 59 81.4
Gohir.A12G087500 Gossypium hirsutum HOM05D003509 ORTHO05D004205 2.5e-21 105.5 59 81.4
Gohir.D12G085800 Gossypium hirsutum HOM05D003509 ORTHO05D004205 2.5e-21 105.5 59 81.4
Gorai.008G096100 Gossypium raimondii HOM05D003509 ORTHO05D004205 2.5e-21 105.5 59 81.4
Sc13g0001620 Simmondsia chinensis HOM05D003509 ORTHO05D004205 2.5e-21 105.5 59 79.7
Thecc.01G102500 Theobroma cacao HOM05D003509 ORTHO05D004205 2.5e-21 105.5 59 83.1
Cpa.g.sc213.16 Carica papaya HOM05D003509 ORTHO05D004205 3.2e-21 105.1 59 84.7
Glyma.11G239800 Glycine max HOM05D003509 ORTHO05D004205 3.2e-21 105.1 59 84.7
MD02G1255200 Malus domestica HOM05D003509 ORTHO05D004205 3.2e-21 105.1 75 73.3
Glyma.05G178900 Glycine max HOM05D003509 ORTHO05D004205 4.2e-21 104.8 59 84.7
Glyma.08G136400 Glycine max HOM05D003509 ORTHO05D004205 4.2e-21 104.8 59 84.7
Sabra07G0075800 Salix brachista HOM05D003509 ORTHO05D004205 4.2e-21 104.8 75 72.0
TAR628G0828 Trochodendron aralioides HOM05D003509 ORTHO05D004205 4.2e-21 104.8 56 87.5
Actinidia06565 Actinidia chinensis HOM05D003509 ORTHO05D004205 5.5e-21 104.4 75 69.3
Thhalv10024225m.g Eutrema salsugineum HOM05D003509 ORTHO05D004205 5.5e-21 104.4 74 71.6
FAN23G1356 Fragaria x ananassa HOM05D003509 ORTHO05D004205 5.5e-21 104.4 75 73.3
TWI74G1477 Tripterygium wilfordii HOM05D003509 ORTHO05D004205 5.5e-21 104.4 58 84.5
VMungo0251G2994 Vigna mungo HOM05D003509 ORTHO05D004205 5.5e-21 104.4 56 87.5
arahy.Tifrunner.gnm1.ann1.R7GNZQ Arachis hypogaea HOM05D003509 ORTHO05D004205 7.2e-21 104.0 59 84.7
arahy.Tifrunner.gnm1.ann1.Y9QREV Arachis hypogaea HOM05D003509 ORTHO05D004205 7.2e-21 104.0 59 84.7
BcaNung02306 Brassica carinata HOM05D003509 ORTHO05D004205 7.2e-21 104.0 74 70.3
BcaNung03401 Brassica carinata HOM05D003509 ORTHO05D004205 7.2e-21 104.0 74 70.3
A08p23300 Brassica napus HOM05D003509 ORTHO05D004205 7.2e-21 104.0 74 70.3
C03p78380 Brassica napus HOM05D003509 ORTHO05D004205 7.2e-21 104.0 74 70.3
C07p62850 Brassica napus HOM05D003509 ORTHO05D004205 7.2e-21 104.0 74 70.3
BolC3t20097H Brassica oleracea HOM05D003509 ORTHO05D004205 7.2e-21 104.0 74 70.3
BolC7t46697H Brassica oleracea HOM05D003509 ORTHO05D004205 7.2e-21 104.0 74 70.3
BraA08t34285Z Brassica rapa HOM05D003509 ORTHO05D004205 7.2e-21 104.0 74 70.3
Carub.0007s0178 Capsella rubella HOM05D003509 ORTHO05D004205 7.2e-21 104.0 74 70.3
CARHR246850 Cardamine hirsuta HOM05D003509 ORTHO05D004205 7.2e-21 104.0 74 70.3
Aa31LG6G15410 Aethionema arabicum HOM05D003509 ORTHO05D004205 9.4e-21 103.6 74 70.3
AL7G12080 Arabidopsis lyrata HOM05D003509 ORTHO05D004205 9.4e-21 103.6 74 70.3
AT4G39850 Arabidopsis thaliana HOM05D003509 ORTHO05D004205 9.4e-21 103.6 74 70.3
MD07G1066800 Malus domestica HOM05D003509 ORTHO05D004205 9.4e-21 103.6 75 72.0
Sp7g36040 Schrenkiella parvula HOM05D003509 ORTHO05D004205 9.4e-21 103.6 74 70.3
Ah.03g141700 Amaranthus hybridus HOM05D003509 ORTHO05D004205 1.2e-20 103.2 94 58.5
Gohir.A11G201000 Gossypium hirsutum HOM05D003509 ORTHO05D004205 1.2e-20 103.2 59 78.0
QL06p049655 Quercus lobata HOM05D003509 ORTHO05D004205 1.2e-20 103.2 58 81.0
Ciclev10024720m.g Citrus clementina HOM05D003509 ORTHO05D004205 1.6e-20 102.8 59 83.1
Duzib264G1109 Durio zibethinus HOM05D003509 ORTHO05D004205 1.6e-20 102.8 59 79.7
Gohir.D11G222000 Gossypium hirsutum HOM05D003509 ORTHO05D004205 1.6e-20 102.8 59 78.0
Gorai.007G239200 Gossypium raimondii HOM05D003509 ORTHO05D004205 1.6e-20 102.8 59 78.0
TPR.G17853 Trifolium pratense HOM05D003509 ORTHO05D004205 1.6e-20 102.8 59 81.4
Manes.06G027900 Manihot esculenta HOM05D003509 ORTHO05D004205 2.1e-20 102.4 58 82.8
Ca_16534_v3 Cicer arietinum L. HOM05D003509 ORTHO05D004205 2.7e-20 102.1 75 70.7
Gohir.D03G037100 Gossypium hirsutum HOM05D003509 ORTHO05D004205 2.7e-20 102.1 59 78.0
Gorai.003G038900 Gossypium raimondii HOM05D003509 ORTHO05D004205 2.7e-20 102.1 59 78.0
Lalb_Chr23g0277341 Lupinus albus HOM05D003509 ORTHO05D004205 3.6e-20 101.7 59 79.7
Psat5g089680 Pisum sativum HOM05D003509 ORTHO05D004205 3.6e-20 101.7 59 81.4
Atru.chr4.74 Acer truncatum HOM05D003509 ORTHO05D004205 4.7e-20 101.3 74 71.6
ATR0763G048 Amborella trichopoda HOM05D003509 ORTHO05D004205 4.7e-20 101.3 56 76.8
SEGI_16561 Sequoiadendron giganteum HOM05D003509 ORTHO05D004205 4.7e-20 101.3 56 82.1
Gohir.A02G143400 Gossypium hirsutum HOM05D003509 ORTHO05D004205 6.1e-20 100.9 59 78.0
HPP92_016104 Vanilla planifolia HOM05D003509 ORTHO05D004205 6.1e-20 100.9 71 67.6
AagrBONN_evm.TU.Sc2ySwM_344.2362 Anthoceros agrestis HOM05D003509 ORTHO05D004205 8.0e-20 100.5 56 83.9
CDE04G0016 Ceratophyllum demersum HOM05D003509 ORTHO05D004205 1.0e-19 100.1 74 67.6
THA.LOC104807697 Tarenaya hassleriana HOM05D003509 ORTHO05D004205 1.0e-19 100.1 74 67.6
Lalb_Chr08g0231091 Lupinus albus HOM05D003509 ORTHO05D004205 1.4e-19 99.8 59 79.7
Lalb_Chr11g0075361 Lupinus albus HOM05D003509 ORTHO05D004205 1.4e-19 99.8 56 82.1
Manes.12G135600 Manihot esculenta HOM05D003509 ORTHO05D004205 1.4e-19 99.8 59 81.4
Medtr3g087350 Medicago truncatula HOM05D003509 ORTHO05D004205 2.3e-19 99.0 59 78.0
EL10As8g23855 Beta vulgaris HOM05D003509 ORTHO05D004205 4.0e-19 98.2 55 83.6
Hund19140 Selenicereus undatus HOM05D003509 ORTHO05D004205 5.2e-19 97.8 75 66.7
Lj4A888G17 Lonicera japonica HOM05D003509 ORTHO05D004205 6.8e-19 97.4 86 61.6
Mapoly0144s0028 Marchantia polymorpha HOM05D003509 ORTHO05D004205 6.8e-19 97.4 88 59.1
SMO351G0412 Selaginella moellendorffii HOM05D003509 ORTHO05D004205 7.5e-18 94.0 71 63.4
Pp3c14_6330 Physcomitrium patens HOM05D003509 ORTHO05D004205 2.8e-17 92.0 88 55.7
Migut.L00116 Erythranthe guttata HOM05D003509 ORTHO05D004205 2.9e-14 82.0 58 75.9
COL.COLO4_09956 Corchorus olitorius HOM05D003509 ORTHO05D004205 4.2e-13 78.2 67 59.7
SGA_v2.0_scaffold47G17784 Striga asiatica HOM05D003509 ORTHO05D004205 6.1e-12 74.3 59 66.1
SalBow5G3202 Salvia bowleyana HOM05D003509 ORTHO05D004205 1.0e-11 73.6 61 60.7
Haze_26893 Corylus avellana HOM05D003509 ORTHO05D004205 2.0e-07 59.3 86 31.4


User provided reference genes

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