Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.5e-110 402.1 202 100.0
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 5.6e-54 214.9 138 82.6
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 3.1e-52 209.1 135 79.3
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 3.4e-51 205.7 135 78.5
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 4.6e-48 195.3 154 68.8
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 5.6e-46 188.3 137 73.7
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 4.4e-43 178.7 134 69.4
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 1.3e-42 177.2 136 71.3
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.9e-42 175.3 140 71.4
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.1e-41 174.1 138 66.7
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 9.3e-41 171.0 113 77.9
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 9.3e-41 171.0 147 67.3
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 2.7e-40 169.5 138 65.9
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 4.6e-40 168.7 138 65.2
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 6.0e-40 168.3 129 70.5
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 7.8e-40 167.9 134 67.2
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 7.8e-40 167.9 138 68.1
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 1.7e-39 166.8 128 69.5
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 2.3e-39 166.4 138 65.2
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 2.3e-39 166.4 138 64.5
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 3.0e-39 166.0 139 63.3
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 3.3e-38 162.5 139 64.0
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 4.3e-38 162.2 138 63.0
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 7.3e-38 161.4 137 64.2
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 9.6e-38 161.0 138 65.2
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 9.6e-38 161.0 130 66.9
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 9.6e-38 161.0 134 66.4
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 9.6e-38 161.0 139 61.2
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 1.6e-37 160.2 139 65.5
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 1.6e-37 160.2 137 59.1
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 3.6e-37 159.1 156 59.0
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 3.6e-37 159.1 140 62.1
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 3.6e-37 159.1 138 63.8
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 4.8e-37 158.7 139 64.0
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 6.2e-37 158.3 138 60.1
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 8.1e-37 157.9 139 59.7
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 1.1e-36 157.5 134 64.2
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.8e-36 156.8 142 59.9
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 4.0e-36 155.6 132 63.6
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.0e-36 155.6 137 61.3
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 4.0e-36 155.6 132 64.4
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 5.3e-36 155.2 132 62.9
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 9.0e-36 154.5 138 62.3
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 9.0e-36 154.5 140 60.0
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 9.0e-36 154.5 152 57.2
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 1.2e-35 154.1 138 60.1
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 1.2e-35 154.1 132 62.1
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 3.4e-35 152.5 129 62.0
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 3.4e-35 152.5 138 64.5
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 5.8e-35 151.8 132 62.9
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 2.2e-34 149.8 165 55.8
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 6.4e-34 148.3 131 62.6
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 1.4e-33 147.1 152 54.6
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.9e-33 146.7 138 60.1
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 5.4e-33 145.2 136 60.3
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.7e-32 142.9 137 60.6
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 2.7e-32 142.9 133 59.4
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 6.0e-32 141.7 137 59.9
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 1.3e-31 140.6 140 59.3
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 2.3e-31 139.8 116 62.9
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 3.0e-31 139.4 130 57.7
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 3.9e-31 139.0 128 60.2
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 5.1e-31 138.7 138 57.2
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 5.1e-31 138.7 137 59.1
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 6.6e-31 138.3 135 56.3
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.1e-30 137.5 129 57.4
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 1.1e-30 137.5 139 56.8
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 1.9e-30 136.7 167 49.1
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 4.3e-30 135.6 151 55.6
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 7.3e-30 134.8 129 56.6
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 1.3e-29 134.0 129 57.4
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 1.6e-29 133.7 134 56.0
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 2.8e-29 132.9 129 56.6
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 2.8e-29 132.9 135 53.3
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 1.4e-28 130.6 126 58.7
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 1.4e-28 130.6 158 48.1
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 1.4e-28 130.6 158 48.1
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 1.4e-28 130.6 126 58.7
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 1.4e-28 130.6 123 59.3
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 2.4e-28 129.8 98 68.4
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 4.0e-28 129.0 153 49.0
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 5.3e-28 128.6 129 55.0
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 9.0e-28 127.9 138 54.3
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.5e-27 127.1 121 60.3
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.5e-27 127.1 121 60.3
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 1.5e-27 127.1 121 60.3
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 2.6e-27 126.3 126 54.0
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 2.6e-27 126.3 116 59.5
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 3.4e-27 125.9 157 50.3
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 7.6e-27 124.8 135 53.3
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 4.9e-26 122.1 108 62.0
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 1.2e-24 117.5 157 46.5
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 4.6e-24 115.5 126 54.0
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 6.0e-24 115.2 138 47.8
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 1.3e-23 114.0 130 50.8
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 3.3e-22 109.4 148 44.6
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 3.3e-22 109.4 132 48.5
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 5.6e-22 108.6 65 73.8
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 5.6e-22 108.6 70 80.0
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 9.6e-22 107.8 130 50.0
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 9.6e-22 107.8 63 76.2
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.7e-21 105.9 128 53.9
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 1.4e-20 104.0 132 49.2
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 5.3e-20 102.1 129 47.3
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 9.0e-20 101.3 130 44.6
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 3.4e-19 99.4 134 46.3
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 4.2e-17 92.4 128 43.8
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 9.3e-17 91.3 138 42.0
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 2.7e-16 89.7 135 42.2
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 7.4e-14 81.6 129 43.4
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 9.6e-14 81.3 92 52.2
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.5e-11 72.4 80 57.5
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 2.2e-10 70.1 128 37.5
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 2.5e-09 66.6 129 38.0


User provided reference genes

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