Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.2e-144 516.5 268 100.0
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 5.0e-143 511.1 268 99.3
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.2e-128 463.4 267 91.0
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 2.8e-125 452.2 270 88.1
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 7.0e-121 437.6 270 85.6
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 7.8e-120 434.1 275 81.5
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 1.2e-117 426.8 273 85.0
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 8.0e-117 424.1 276 81.2
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.2e-116 421.4 272 82.7
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 2.0e-115 419.5 267 84.3
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 3.4e-115 418.7 269 83.3
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 7.5e-115 417.5 274 81.0
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 7.5e-115 417.5 274 81.0
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 1.3e-114 416.8 273 80.2
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 1.7e-114 416.4 276 81.5
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 6.4e-114 414.5 270 81.1
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 1.1e-113 413.7 276 80.4
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.4e-113 412.5 277 80.1
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.4e-113 412.5 275 81.1
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 3.2e-113 412.1 274 82.1
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.1e-113 411.8 275 82.2
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 4.1e-113 411.8 271 81.5
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 5.4e-113 411.4 277 79.4
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 5.4e-113 411.4 277 79.4
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.2e-112 410.2 271 80.8
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.6e-112 409.8 281 79.7
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.1e-112 409.5 275 81.8
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 2.1e-112 409.5 273 78.8
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 3.5e-112 408.7 278 80.2
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 3.5e-112 408.7 268 80.6
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 6.0e-112 407.9 273 80.6
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.7e-111 406.4 279 79.6
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 3.9e-111 405.2 271 78.2
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 3.9e-111 405.2 278 79.1
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 3.9e-111 405.2 274 79.2
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.1e-111 404.8 267 79.8
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 6.6e-111 404.4 275 79.6
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 8.6e-111 404.1 272 79.4
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.9e-110 402.9 277 77.6
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 2.5e-110 402.5 270 79.6
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 4.3e-110 401.7 276 78.3
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 5.6e-110 401.4 274 79.9
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 7.3e-110 401.0 275 79.3
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 9.5e-110 400.6 272 79.8
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 9.5e-110 400.6 268 80.6
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 9.5e-110 400.6 280 78.6
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 1.6e-109 399.8 272 79.8
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 1.6e-109 399.8 272 79.8
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 1.6e-109 399.8 272 79.8
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 1.6e-109 399.8 272 79.4
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 2.1e-109 399.4 280 78.6
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 6.2e-109 397.9 272 79.4
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 8.1e-109 397.5 275 78.9
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.1e-108 397.1 275 78.9
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.1e-108 397.1 277 77.6
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-108 396.7 272 80.5
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.8e-108 396.4 271 80.8
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.8e-108 396.4 271 80.8
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 3.1e-108 395.6 271 80.1
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 3.1e-108 395.6 280 77.9
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 4.0e-108 395.2 272 80.1
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.0e-108 395.2 275 78.2
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.8e-108 394.4 275 78.2
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 8.9e-108 394.0 272 80.5
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 1.2e-107 393.7 272 80.1
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 2.0e-107 392.9 270 78.9
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 2.0e-107 392.9 273 78.4
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 2.6e-107 392.5 272 79.8
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 2.6e-107 392.5 272 79.8
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 3.4e-107 392.1 272 79.8
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 3.4e-107 392.1 272 79.8
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 3.4e-107 392.1 272 77.9
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 4.4e-107 391.7 275 76.0
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 4.4e-107 391.7 275 76.7
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 4.4e-107 391.7 271 78.2
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 5.8e-107 391.3 272 78.7
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 7.5e-107 391.0 271 77.9
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 9.9e-107 390.6 260 79.2
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 9.9e-107 390.6 268 78.4
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.7e-106 389.8 276 79.3
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.7e-106 389.8 272 79.4
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 2.9e-106 389.0 271 74.9
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 4.9e-106 388.3 278 77.0
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 4.9e-106 388.3 278 77.0
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 4.9e-106 388.3 272 77.6
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 6.4e-106 387.9 273 78.4
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.1e-105 387.1 275 77.1
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.4e-105 386.7 273 78.0
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.4e-105 386.7 269 77.0
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.9e-105 386.3 281 75.4
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.9e-105 386.3 275 78.2
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.9e-105 386.3 280 73.2
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 5.4e-105 384.8 268 79.9
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 9.2e-105 384.0 272 77.9
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 1.6e-104 383.3 270 78.5
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 2.1e-104 382.9 271 77.9
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 4.6e-104 381.7 272 77.2
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 7.8e-104 380.9 273 76.6
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.0e-103 380.6 274 75.2
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.3e-103 379.4 268 75.4
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 4.3e-102 375.2 273 76.6
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.6e-101 373.2 277 74.4
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 8.1e-101 370.9 271 75.6
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.1e-100 370.5 272 76.8
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.4e-100 370.2 276 75.7
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 1.8e-100 369.8 276 76.4
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.8e-100 369.8 242 81.0
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 3.1e-100 369.0 234 82.5
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 4.0e-100 368.6 274 73.7
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 1.2e-99 367.1 275 75.6
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.0e-99 366.3 198 91.9
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 2.0e-99 366.3 274 74.8
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 2.0e-99 366.3 267 74.2
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.3e-98 363.6 276 73.6
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.4e-97 360.1 287 72.1
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.7e-95 353.2 217 83.4
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.7e-90 336.7 193 87.0
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 2.8e-85 319.3 283 64.0
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 3.6e-85 318.9 217 75.1
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 6.9e-84 314.7 196 81.1
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 8.4e-82 307.8 240 72.5
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.6e-80 303.5 239 66.9
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 5.1e-79 298.5 169 88.2
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 7.4e-78 294.7 190 81.6
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 9.6e-70 267.7 193 77.7
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 4.5e-67 258.8 161 82.6
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 9.3e-65 251.1 134 94.0
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 2.7e-64 249.6 200 73.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 3.3e-62 242.7 161 74.5
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.1e-54 217.6 165 66.7
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.4e-49 200.7 147 78.2
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 2.5e-49 199.9 272 51.5
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 9.1e-44 181.4 124 74.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.9e-41 173.7 229 52.0
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 6.1e-40 168.7 96 84.4
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 5.3e-36 155.6 247 42.9
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.6e-35 154.1 247 42.5
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.2e-23 112.5 81 79.0
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 1.7e-21 107.5 109 62.4
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.2e-11 74.7 176 31.2
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 7.8e-11 72.0 175 30.3
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.0e-10 69.3 38 86.8
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.6e-08 63.2 82 52.4
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 4.0e-07 59.7 60 48.3
Pp3c7_6810 Physcomitrium patens HOM05D041339 ORTHO05D031170 1.5e-06 57.8 100 42.0
Pp3c11_21590 Physcomitrium patens HOM05D041339 ORTHO05D031170 2.6e-06 57.0 99 42.4


User provided reference genes

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