Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039438 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 8.2e-154 547.0 268 100.0
CSS0046960 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 5.6e-94 348.2 268 70.9
Thecc.02G187400 Theobroma cacao HOM05D000179 ORTHO05D000107 9.0e-84 314.3 270 63.3
CSS0027321 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.2e-80 303.9 272 65.1
Duzib132G0549 Durio zibethinus HOM05D000179 ORTHO05D000107 6.7e-79 298.1 270 60.7
QL08p040636 Quercus lobata HOM05D000179 ORTHO05D000107 1.5e-78 297.0 273 61.5
COL.COLO4_37679 Corchorus olitorius HOM05D000179 ORTHO05D000107 3.1e-76 289.3 276 59.4
Gohir.A03G154300 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.9e-73 280.0 271 58.3
Gohir.D02G177200 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.2e-73 279.3 271 57.6
Gorai.005G198900 Gossypium raimondii HOM05D000179 ORTHO05D000107 7.1e-73 278.1 271 57.6
Gohir.A12G139500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.8e-71 273.5 271 58.3
Gohir.D12G144000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.8e-71 273.5 271 57.9
Manes.12G086200 Manihot esculenta HOM05D000179 ORTHO05D000107 1.1e-70 270.8 285 59.6
Gorai.008G155300 Gossypium raimondii HOM05D000179 ORTHO05D000107 2.1e-69 266.5 271 57.6
Manes.13G141500 Manihot esculenta HOM05D000179 ORTHO05D000107 3.1e-68 262.7 283 58.3
Potri.007G135000 Populus trichocarpa HOM05D000179 ORTHO05D000107 6.9e-68 261.5 280 58.6
Potri.017G017100 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.3e-66 257.3 279 58.4
CiPaw.03G182500 Carya illinoinensis HOM05D000179 ORTHO05D000107 1.9e-65 253.4 268 55.2
TAR627G0370 Trochodendron aralioides HOM05D000179 ORTHO05D000107 2.5e-65 253.1 280 56.4
Oeu047869.1 Olea europaea HOM05D000179 ORTHO05D000107 1.2e-64 250.8 272 54.8
CiPaw.04G129300 Carya illinoinensis HOM05D000179 ORTHO05D000107 2.7e-64 249.6 271 56.8
GSVIVG01020612001 Vitis vinifera HOM05D000179 ORTHO05D000107 5.1e-63 245.4 269 56.9
Dinv06851 Davidia involucrata HOM05D000179 ORTHO05D000107 1.3e-61 240.7 274 58.0
MBI06_g42696_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 9.0e-60 234.6 252 55.2
MBI06_g45915_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 9.0e-60 234.6 252 55.2
Ciclev10015043m.g Citrus clementina HOM05D000179 ORTHO05D000107 2.2e-58 229.9 291 51.2
TAR626G1149 Trochodendron aralioides HOM05D000179 ORTHO05D000107 1.1e-57 227.6 230 56.5
Sabra17G0013300 Salix brachista HOM05D000179 ORTHO05D000107 1.4e-57 227.3 273 54.2
MSTRG.15126 Avicennia marina HOM05D000179 ORTHO05D000107 7.2e-57 224.9 275 49.5
Cpa.g.c36910 Carica papaya HOM05D000179 ORTHO05D000107 7.2e-57 224.9 264 53.4
Peaxi162Scf00845g00005 Petunia axillaris HOM05D000179 ORTHO05D000107 1.6e-56 223.8 290 51.4
Lalb_Chr14g0367181 Lupinus albus HOM05D000179 ORTHO05D000107 3.0e-55 219.5 258 57.8
Nn1g06399 Nelumbo nucifera HOM05D000179 ORTHO05D000107 3.0e-55 219.5 256 52.3
Lalb_Chr03g0029671 Lupinus albus HOM05D000179 ORTHO05D000107 2.0e-54 216.9 284 51.8
TAR624G0041 Trochodendron aralioides HOM05D000179 ORTHO05D000107 7.4e-54 214.9 263 52.1
Phvul.005G099800 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 6.3e-53 211.8 256 50.8
Glyma.12G207200 Glycine max HOM05D000179 ORTHO05D000107 1.1e-52 211.1 266 52.3
VMungo1080G0780 Vigna mungo HOM05D000179 ORTHO05D000107 2.4e-52 209.9 254 49.6
Glyma.13G293800 Glycine max HOM05D000179 ORTHO05D000107 9.1e-52 208.0 258 50.4
Lalb_Chr19g0135071 Lupinus albus HOM05D000179 ORTHO05D000107 9.1e-52 208.0 285 50.2
Aqoxy4G00602 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 2.6e-51 206.5 274 50.7
Actinidia10994 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.0e-50 204.5 273 50.5
Lalb_Chr01g0005051 Lupinus albus HOM05D000179 ORTHO05D000107 1.3e-50 204.1 282 50.7
Dinv04584 Davidia involucrata HOM05D000179 ORTHO05D000107 3.8e-50 202.6 285 53.3
Lj3g0015548 Lotus japonicus HOM05D000179 ORTHO05D000107 6.5e-50 201.8 271 49.4
Atru.chr6.2924 Acer truncatum HOM05D000179 ORTHO05D000107 8.5e-50 201.4 285 49.1
Cc05_g07790 Coffea canephora HOM05D000179 ORTHO05D000107 9.4e-49 198.0 281 48.4
TWI59G0817 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 1.6e-48 197.2 288 51.4
Nitab4.5_0022126g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 4.7e-48 195.7 294 48.3
Cfa014667 Carpinus fangiana HOM05D000179 ORTHO05D000107 7.9e-48 194.9 269 48.3
Aqoxy1G02296 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 1.4e-47 194.1 270 45.2
Ca_18917_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 1.8e-47 193.7 274 50.7
Haze_13257 Corylus avellana HOM05D000179 ORTHO05D000107 2.6e-46 189.9 268 47.8
RcHm_v2.0_Chr2g0128541 Rosa chinensis HOM05D000179 ORTHO05D000107 3.3e-46 189.5 302 46.7
TPR.G14263 Trifolium pratense HOM05D000179 ORTHO05D000107 3.7e-45 186.0 284 44.7
Oeu016005.1 Olea europaea HOM05D000179 ORTHO05D000107 4.8e-45 185.7 283 48.1
vmacro12350 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 4.8e-45 185.7 270 45.2
Oeu022440.1 Olea europaea HOM05D000179 ORTHO05D000107 1.1e-44 184.5 277 46.9
FAN14G5733 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.4e-44 183.3 299 44.8
Glyma.06G287200 Glycine max HOM05D000179 ORTHO05D000107 2.4e-44 183.3 272 45.2
FAN05G4351 Fragaria x ananassa HOM05D000179 ORTHO05D000107 3.1e-44 183.0 297 45.1
FAN09G2011 Fragaria x ananassa HOM05D000179 ORTHO05D000107 3.1e-44 183.0 299 44.5
FvH4_6g26760 Fragaria vesca HOM05D000179 ORTHO05D000107 7.0e-44 181.8 299 44.5
Nn1g04251 Nelumbo nucifera HOM05D000179 ORTHO05D000107 1.5e-43 180.6 171 58.5
FAN02G0187 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.6e-43 179.9 299 44.1
DCAR_013042 Daucus carota HOM05D000179 ORTHO05D000107 3.8e-42 176.0 263 47.5
CAN.G1808.6 Capsicum annuum HOM05D000179 ORTHO05D000107 1.9e-41 173.7 310 41.9
Lj1A708T20 Lonicera japonica HOM05D000179 ORTHO05D000107 7.2e-41 171.8 271 43.2
Lj3g0001553 Lotus japonicus HOM05D000179 ORTHO05D000107 9.4e-41 171.4 268 47.0
Phvul.011G123200 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 9.4e-41 171.4 242 47.5
PSO675G6655 Papaver somniferum HOM05D000179 ORTHO05D000107 1.2e-40 171.0 273 46.5
PSO541G2839 Papaver somniferum HOM05D000179 ORTHO05D000107 3.6e-40 169.5 275 46.2
VMungo1127G0441 Vigna mungo HOM05D000179 ORTHO05D000107 2.3e-39 166.8 241 46.1
Glyma.12G118800 Glycine max HOM05D000179 ORTHO05D000107 3.0e-39 166.4 268 44.4
Ca_17939_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 2.0e-38 163.7 244 45.9
Nitab4.5_0005191g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.6e-38 163.3 290 45.5
arahy.Tifrunner.gnm1.ann1.IGV1QM Arachis hypogaea HOM05D000179 ORTHO05D000107 5.7e-38 162.2 293 44.4
arahy.Tifrunner.gnm1.ann1.TQHX8C Arachis hypogaea HOM05D000179 ORTHO05D000107 7.4e-38 161.8 293 43.7
Sopen07g027520 Solanum pennellii HOM05D000179 ORTHO05D000107 2.8e-37 159.8 323 41.8
Eucgr.K01062 Eucalyptus grandis HOM05D000179 ORTHO05D000107 6.3e-37 158.7 286 40.2
Atru.chr6.2862 Acer truncatum HOM05D001387 ORTHO05D000107 8.2e-37 158.3 199 52.8
Psat5g274000 Pisum sativum HOM05D000179 ORTHO05D000107 1.8e-36 157.1 250 44.8
Phvul.011G115245 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 5.3e-36 155.6 242 44.6
Solyc07g053570.4 Solanum lycopersicum HOM05D000179 ORTHO05D000107 7.0e-36 155.2 313 42.2
Psat0s283g0040 Pisum sativum HOM05D000179 ORTHO05D000107 1.7e-34 150.6 216 48.1
Medtr2g090745 Medicago truncatula HOM05D000179 ORTHO05D000107 6.5e-34 148.7 247 43.3
Lsat_1_v5_gn_4_66301 Lactuca sativa HOM05D000179 ORTHO05D000107 3.2e-33 146.4 275 40.7
Sc12g0003260 Simmondsia chinensis HOM05D000179 ORTHO05D000107 3.2e-33 146.4 269 42.8
THA.LOC104814514 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 3.2e-33 146.4 284 40.1
Migut.M00153 Erythranthe guttata HOM05D000179 ORTHO05D000107 4.2e-33 146.0 236 46.2
PGSC0003DMG400009382 Solanum tuberosum HOM05D000179 ORTHO05D000107 2.7e-32 143.3 307 39.4
TWI14G1092 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 2.7e-32 143.3 279 43.0
EL10Ac9g20826 Beta vulgaris HOM05D000179 ORTHO05D000107 4.7e-32 142.5 308 39.3
PGR142G2299 Punica granatum HOM05D000179 ORTHO05D000107 5.7e-30 135.6 260 41.5
Hund01009 Selenicereus undatus HOM05D000179 ORTHO05D000107 4.5e-27 125.9 306 37.9
SalBow7G3562 Salvia bowleyana HOM05D000179 ORTHO05D000107 1.0e-26 124.8 188 49.5
arahy.Tifrunner.gnm1.ann1.H5QJF0 Arachis hypogaea HOM05D000179 ORTHO05D000107 1.7e-26 124.0 176 48.9
arahy.Tifrunner.gnm1.ann1.5RS65W Arachis hypogaea HOM05D000179 ORTHO05D000107 2.9e-26 123.2 176 48.3
SalBow7G0051 Salvia bowleyana HOM05D000179 ORTHO05D000107 3.8e-26 122.9 188 48.4
HanXRQChr05g0140401 Helianthus annuus HOM05D000179 ORTHO05D000107 6.5e-26 122.1 277 36.8
arahy.Tifrunner.gnm1.ann1.16I18L Arachis hypogaea HOM05D000179 ORTHO05D000107 8.5e-26 121.7 176 47.7
arahy.Tifrunner.gnm1.ann1.6Z1LR7 Arachis hypogaea HOM05D000179 ORTHO05D000107 9.4e-25 118.2 168 49.4
CANSAT64G1845 Cannabis sativa HOM05D000179 ORTHO05D000107 6.1e-24 115.5 171 48.5
CANSAT64G1274 Cannabis sativa HOM05D000179 ORTHO05D000107 8.0e-24 115.2 171 48.5
CARHR179110 Cardamine hirsuta HOM05D000179 ORTHO05D000107 1.0e-23 114.8 193 38.3
SalBow7G0013 Salvia bowleyana HOM05D000179 ORTHO05D000107 6.8e-23 112.1 271 35.1
RcHm_v2.0_Chr0c19g0500141 Rosa chinensis HOM05D000179 ORTHO05D000107 1.2e-22 111.3 134 53.0
THA.LOC104826041 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 9.8e-22 108.2 197 40.6
Sp1g02700 Schrenkiella parvula HOM05D000179 ORTHO05D000107 1.7e-21 107.5 240 36.2
BcaC06g31647 Brassica carinata HOM05D000179 ORTHO05D000107 2.8e-21 106.7 200 37.0
Carub.0001s0296 Capsella rubella HOM05D000179 ORTHO05D000107 4.8e-21 105.9 315 32.4
A09p68200 Brassica napus HOM05D000179 ORTHO05D000107 8.3e-21 105.1 206 36.9
BraA06t27613Z Brassica rapa HOM05D000179 ORTHO05D000107 8.3e-21 105.1 151 45.0
BraA09t42155Z Brassica rapa HOM05D000179 ORTHO05D000107 8.3e-21 105.1 206 36.9
C08p52640 Brassica napus HOM05D000179 ORTHO05D000107 1.8e-20 104.0 204 37.3
AL1G13400 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 3.1e-20 103.2 214 38.8
BolC8t52790H Brassica oleracea HOM05D000179 ORTHO05D000107 3.1e-20 103.2 204 36.8
Sp2g08990 Schrenkiella parvula HOM05D000179 ORTHO05D000107 4.1e-20 102.8 163 42.9
Aa31LG1G9050 Aethionema arabicum HOM05D000179 ORTHO05D000107 7.0e-20 102.1 191 37.7
A06p47430 Brassica napus HOM05D000179 ORTHO05D000107 7.0e-20 102.1 151 44.4
Carub.0008s0436 Capsella rubella HOM05D000179 ORTHO05D000107 7.0e-20 102.1 204 36.3
BcaC05g24502 Brassica carinata HOM05D000179 ORTHO05D000107 9.1e-20 101.7 196 37.8
ECA234G0982 Erigeron canadensis HOM05D000179 ORTHO05D000107 9.1e-20 101.7 295 34.9
BcaC06g34586 Brassica carinata HOM05D000179 ORTHO05D000107 2.0e-19 100.5 152 44.1
C07p26850 Brassica napus HOM05D000179 ORTHO05D000107 2.7e-19 100.1 153 43.8
AL8G15860 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 4.5e-19 99.4 133 48.1
AT1G03840 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 4.5e-19 99.4 215 38.1
Thhalv10009734m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 4.5e-19 99.4 236 35.6
SGA_v2.0_scaffold70G23482 Striga asiatica HOM05D000179 ORTHO05D000107 7.7e-19 98.6 248 35.9
AT5G44160 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 2.3e-18 97.1 134 47.8
A10p02370 Brassica napus HOM05D000179 ORTHO05D000107 2.3e-18 97.1 196 36.7
BolC5t28996H Brassica oleracea HOM05D000179 ORTHO05D000107 2.3e-18 97.1 197 37.6
SalBow7G1227 Salvia bowleyana HOM05D000179 ORTHO05D000107 2.9e-18 96.7 229 36.2
CARHR003170 Cardamine hirsuta HOM05D000179 ORTHO05D000107 8.6e-18 95.1 215 36.7
C05p02180 Brassica napus HOM05D000179 ORTHO05D000107 1.5e-17 94.4 197 37.1
ClCG02G002310 Citrullus lanatus HOM05D000179 ORTHO05D000107 3.3e-17 93.2 152 47.4
Thhalv10003218m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 1.6e-16 90.9 134 45.5
Prupe.3G128100 Prunus persica HOM05D000179 ORTHO05D000107 2.1e-16 90.5 300 31.3
MELO3C018864.2 Cucumis melo HOM05D000179 ORTHO05D000107 8.0e-16 88.6 151 45.0
CsaV3_7G003130 Cucumis sativus L. HOM05D000179 ORTHO05D000107 8.0e-16 88.6 177 39.5
Sed0020343 Sechium edule HOM05D000179 ORTHO05D000107 2.3e-15 87.0 201 37.8
BcaC07g42226 Brassica carinata HOM05D000179 ORTHO05D000107 2.0e-14 84.0 201 35.3
BcaC05g24500 Brassica carinata HOM05D000179 ORTHO05D000107 5.7e-14 82.4 193 35.2
CDE10G0130 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 5.7e-14 82.4 265 29.4
AUR62036065 Chenopodium quinoa HOM05D000179 ORTHO05D000107 1.3e-13 81.3 149 42.3
BcaC05g24503 Brassica carinata HOM05D000179 ORTHO05D000107 4.9e-13 79.3 181 34.3
AUR62038988 Chenopodium quinoa HOM05D000179 ORTHO05D000107 7.0e-12 75.5 147 40.1
BcaC03g16630 Brassica carinata HOM05D000179 ORTHO05D000107 2.0e-11 73.9 154 37.7
C02p44640 Brassica napus HOM05D000179 ORTHO05D000107 2.0e-11 73.9 154 37.7
Os01g0242200 Oryza sativa ssp. japonica HOM05D000179 ORTHO05D000107 4.5e-11 72.8 180 34.4
RcHm_v2.0_Chr0c19g0500151 Rosa chinensis HOM05D000179 ORTHO05D000107 3.9e-10 69.7 116 44.0
Aa31LG5G3080 Aethionema arabicum HOM05D000179 ORTHO05D000107 5.0e-10 69.3 204 33.3
Rhsim05G0183000 Rhododendron simsii HOM05D000179 ORTHO05D000107 9.5e-09 65.1 234 29.9
Sed0007050 Sechium edule HOM05D000179 ORTHO05D000107 1.2e-08 64.7 152 37.5
MELO3C019330.2 Cucumis melo HOM05D000179 ORTHO05D000107 2.1e-08 63.9 151 37.7
CDE10G0820 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 3.6e-08 63.2 269 29.7
BcaC06g31645 Brassica carinata HOM05D000179 ORTHO05D000107 1.0e-07 61.6 65 44.6
CsaV3_2G034490 Cucumis sativus L. HOM05D000179 ORTHO05D000107 1.4e-07 61.2 155 37.4
Aqoxy4G03249 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 3.1e-07 60.1 304 26.3
Cfa011349 Carpinus fangiana HOM05D000179 ORTHO05D000107 3.1e-07 60.1 254 28.7
GSVIVG01025658001 Vitis vinifera HOM05D000179 ORTHO05D000107 3.1e-07 60.1 244 29.9
Zm00001eb118840 Zea mays HOM05D000179 ORTHO05D000107 3.1e-07 60.1 185 33.5
Actinidia19689 Actinidia chinensis HOM05D000179 ORTHO05D000107 4.0e-07 59.7 272 30.1
Manes.11G142900 Manihot esculenta HOM05D000179 ORTHO05D000107 5.2e-07 59.3 290 23.8
Haze_23885 Corylus avellana HOM05D000179 ORTHO05D000107 1.2e-06 58.2 246 27.6
Manes.04G023700 Manihot esculenta HOM05D000179 ORTHO05D000107 1.5e-06 57.8 285 26.7
PGSC0003DMG400005147 Solanum tuberosum HOM05D000179 ORTHO05D000107 1.5e-06 57.8 265 26.4
QL01p022905 Quercus lobata HOM05D000179 ORTHO05D000107 2.0e-06 57.4 258 30.2
CiPaw.05G164500 Carya illinoinensis HOM05D000179 ORTHO05D000107 3.4e-06 56.6 151 37.1
Potri.006G129300 Populus trichocarpa HOM05D000179 ORTHO05D000107 3.4e-06 56.6 266 30.5
HPP92_008828 Vanilla planifolia HOM05D000179 ORTHO05D000107 4.4e-06 56.2 226 31.9
Peaxi162Scf00182g00066 Petunia axillaris HOM05D000179 ORTHO05D000107 5.8e-06 55.8 240 27.1
Actinidia12417 Actinidia chinensis HOM05D000179 ORTHO05D000107 7.5e-06 55.5 165 34.5
PGSC0003DMG400022141 Solanum tuberosum HOM05D000179 ORTHO05D000107 7.5e-06 55.5 85 40.0


User provided reference genes

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