Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 7.5e-101 370.5 190 100.0
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.4e-54 216.9 201 61.2
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 2.4e-54 216.1 201 60.7
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.9e-51 206.5 195 59.5
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.0e-49 200.7 256 48.8
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 3.0e-49 199.1 212 52.8
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.1e-48 197.2 201 55.2
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 3.3e-48 195.7 201 56.2
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 9.6e-48 194.1 197 56.3
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.6e-47 193.4 201 54.2
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 8.1e-47 191.0 201 52.7
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 1.1e-46 190.7 202 53.5
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.4e-46 190.3 201 54.2
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 2.4e-46 189.5 201 53.7
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 4.0e-46 188.7 207 52.2
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 6.9e-46 188.0 201 53.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.2e-45 187.2 203 53.2
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 1.2e-45 187.2 199 51.8
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 2.0e-45 186.4 207 51.7
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 9.9e-45 184.1 174 64.9
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.7e-44 183.3 201 52.2
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 2.9e-44 182.6 193 53.4
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.8e-44 182.2 193 52.8
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 6.4e-44 181.4 201 52.7
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 8.4e-44 181.0 198 51.5
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 8.4e-44 181.0 198 51.5
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 8.4e-44 181.0 198 51.5
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.1e-43 180.6 199 52.8
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.1e-43 180.6 200 52.0
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.4e-43 180.3 200 52.0
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.9e-43 179.9 206 50.0
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.5e-43 178.3 193 52.3
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 9.3e-43 177.6 192 52.1
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 9.3e-43 177.6 193 52.3
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 9.3e-43 177.6 211 51.7
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.6e-42 176.8 193 52.3
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 3.5e-42 175.6 205 50.7
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 3.5e-42 175.6 201 53.2
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 1.3e-41 173.7 204 52.5
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.3e-41 172.9 205 49.8
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 5.1e-41 171.8 203 49.3
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 8.7e-41 171.0 165 60.0
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 8.7e-41 171.0 186 52.2
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.1e-40 170.6 193 52.8
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.9e-40 169.9 205 50.7
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 4.3e-40 168.7 214 49.5
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 4.3e-40 168.7 214 49.1
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 7.4e-40 167.9 213 49.3
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 9.6e-40 167.5 197 49.7
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.6e-39 166.8 212 49.1
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 1.6e-39 166.8 208 48.6
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 3.7e-39 165.6 211 48.3
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 4.8e-39 165.2 205 51.2
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 4.8e-39 165.2 200 49.0
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 8.1e-39 164.5 205 52.2
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 8.1e-39 164.5 205 52.2
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 1.1e-38 164.1 203 49.8
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 2.4e-38 162.9 210 47.1
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 4.0e-38 162.2 207 47.3
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 5.3e-38 161.8 243 42.0
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 6.9e-38 161.4 196 50.0
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 1.2e-37 160.6 199 48.2
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 1.5e-37 160.2 199 51.8
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.0e-37 159.8 199 51.8
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 2.6e-37 159.5 191 52.4
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.6e-37 159.5 199 52.3
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 4.5e-37 158.7 210 45.2
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 4.5e-37 158.7 210 45.2
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 7.6e-37 157.9 203 44.8
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 1.0e-36 157.5 203 45.8
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 1.3e-36 157.1 203 45.8
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 2.2e-36 156.4 210 45.2
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 2.2e-36 156.4 194 49.5
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 4.9e-36 155.2 211 44.1
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 8.4e-36 154.5 210 45.2
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.1e-35 154.1 210 44.8
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 2.5e-35 152.9 237 42.2
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.2e-35 152.1 196 46.4
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 9.3e-35 151.0 203 45.3
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 1.2e-34 150.6 203 45.8
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.6e-34 150.2 207 45.4
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 2.1e-34 149.8 201 45.3
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 2.7e-34 149.4 208 43.3
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 2.7e-34 149.4 203 45.3
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 3.5e-34 149.1 206 43.7
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.8e-33 146.7 201 44.3
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 2.3e-33 146.4 215 43.3
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.9e-33 145.6 201 44.8
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 5.1e-33 145.2 196 45.4
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 6.7e-33 144.8 203 45.8
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 8.7e-33 144.4 147 59.2
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.1e-32 144.1 212 42.9
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.9e-32 143.3 210 43.8
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 2.5e-32 142.9 203 45.3
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.6e-31 140.2 128 60.2
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.4e-30 136.3 212 46.2
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 2.4e-30 136.3 209 40.2
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 5.3e-30 135.2 116 62.9
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.2e-29 134.0 204 41.2
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 1.5e-29 133.7 209 39.2
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 3.4e-29 132.5 212 42.0
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 5.9e-29 131.7 201 43.8
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 7.6e-29 131.3 184 46.2
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 7.6e-29 131.3 198 41.9
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 1.9e-27 126.7 172 50.6
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 3.2e-27 125.9 151 51.7
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 4.2e-27 125.6 200 42.0
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 5.5e-27 125.2 188 44.1
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.6e-26 122.1 109 59.6
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 4.6e-26 122.1 218 39.9
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 5.1e-25 118.6 198 40.9
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 5.1e-25 118.6 119 51.3
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 4.3e-24 115.5 219 39.3
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.6e-23 113.6 204 38.2
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 2.4e-22 109.8 201 37.3
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 4.1e-22 109.0 202 38.1
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 4.1e-22 109.0 156 45.5
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 5.3e-22 108.6 201 38.3
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 1.2e-21 107.5 201 37.8
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 1.2e-21 107.5 201 36.3
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.2e-21 107.5 201 36.3
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.5e-21 107.1 201 37.3
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 2.0e-21 106.7 201 35.8
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 2.0e-21 106.7 201 35.8
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 3.4e-21 105.9 201 38.8
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 1.7e-20 103.6 242 33.5
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 8.5e-20 101.3 205 36.1
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.1e-19 100.9 214 36.9
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 1.4e-19 100.5 245 33.9
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 1.4e-19 100.5 111 52.3
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 7.2e-19 98.2 205 35.1
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 3.9e-17 92.4 120 47.5
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.5e-16 90.5 117 47.0
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 4.3e-16 89.0 195 35.9
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.3e-12 77.4 172 37.2
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.7e-12 77.0 214 29.4
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 1.7e-12 77.0 199 32.7
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 7.2e-11 71.6 57 59.6
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.0e-09 67.8 129 38.8
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 8.8e-09 64.7 98 41.8
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 4.4e-08 62.4 125 39.2
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.7e-07 60.5 71 50.7
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 7.0e-06 55.1 82 42.7


User provided reference genes

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