Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 5.1e-102 374.4 187 100.0
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 3.9e-94 348.2 187 92.5
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 2.6e-66 255.8 166 78.3
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 1.8e-59 233.0 164 74.4
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 2.9e-57 225.7 162 69.1
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 5.4e-51 204.9 162 63.0
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 3.5e-50 202.2 182 62.6
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 7.7e-50 201.1 183 59.6
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 2.5e-48 196.1 164 61.6
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 3.2e-48 195.7 176 58.5
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 7.2e-48 194.5 164 63.4
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 1.2e-47 193.7 165 63.0
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 1.6e-47 193.4 192 58.3
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 1.6e-47 193.4 174 58.6
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 2.7e-47 192.6 165 62.4
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 4.7e-47 191.8 164 63.4
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 6.1e-47 191.4 181 59.1
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 1.8e-46 189.9 161 61.5
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 4.0e-46 188.7 183 59.6
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 1.5e-45 186.8 164 64.0
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 5.7e-45 184.9 190 55.3
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 7.5e-45 184.5 165 62.4
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 1.3e-44 183.7 164 62.2
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 2.8e-44 182.6 164 61.6
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 4.9e-44 181.8 164 62.2
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 1.4e-43 180.3 157 61.1
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 1.4e-43 180.3 164 58.5
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 3.1e-43 179.1 161 59.6
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 4.1e-43 178.7 173 56.6
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 7.0e-43 177.9 180 55.0
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 7.0e-43 177.9 164 60.4
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 1.6e-42 176.8 161 60.2
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 1.6e-42 176.8 164 55.5
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 3.5e-42 175.6 165 57.6
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 3.5e-42 175.6 164 61.0
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 1.0e-41 174.1 161 58.4
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 1.0e-41 174.1 164 58.5
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 1.3e-41 173.7 169 56.2
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 1.7e-41 173.3 164 60.4
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 1.7e-41 173.3 163 54.6
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 3.8e-41 172.2 183 54.6
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 5.0e-41 171.8 164 58.5
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.1e-40 170.6 188 52.1
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 4.3e-40 168.7 164 57.3
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 9.5e-40 167.5 188 55.3
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 8.0e-39 164.5 163 57.7
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 1.4e-38 163.7 161 55.3
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 3.0e-38 162.5 179 52.5
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 1.2e-37 160.6 165 55.8
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 3.4e-37 159.1 165 53.3
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 4.4e-37 158.7 162 56.2
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 2.2e-36 156.4 162 54.3
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 2.2e-36 156.4 165 52.7
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.2e-36 156.4 165 52.7
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 2.2e-36 156.4 161 54.0
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 2.9e-36 156.0 164 55.5
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 6.4e-36 154.8 165 52.1
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 1.4e-35 153.7 165 52.7
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 1.8e-35 153.3 162 52.5
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 2.4e-35 152.9 182 45.6
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 7.0e-35 151.4 161 55.3
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 9.2e-35 151.0 177 52.0
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 1.2e-34 150.6 161 53.4
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 7.8e-34 147.9 161 50.3
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 3.0e-33 146.0 172 51.2
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 1.1e-32 144.1 161 49.1
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.8e-31 139.4 162 49.4
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 1.0e-30 137.5 164 50.0
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 1.4e-30 137.1 162 49.4
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 1.8e-30 136.7 162 50.0
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 1.5e-29 133.7 171 46.8
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 2.0e-29 133.3 167 44.9
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 7.5e-29 131.3 160 50.6
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 1.3e-28 130.6 171 44.4
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 1.7e-28 130.2 160 52.5
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 1.7e-28 130.2 160 52.5
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 1.7e-28 130.2 168 44.0
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 3.7e-28 129.0 154 51.9
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 4.9e-28 128.6 160 52.5
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 6.4e-28 128.3 160 51.9
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 6.4e-28 128.3 166 48.2
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 1.4e-27 127.1 188 44.7
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 4.1e-27 125.6 166 49.4
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 1.2e-26 124.0 161 49.1
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 1.0e-25 120.9 165 47.9
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 1.1e-24 117.5 185 38.9
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 2.8e-23 112.8 170 45.9
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 4.7e-23 112.1 165 46.7
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 4.0e-22 109.0 78 70.5
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 6.8e-22 108.2 159 45.9
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 2.7e-18 96.3 153 37.9
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 5.6e-16 88.6 175 37.7
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 1.1e-08 64.3 105 37.1


User provided reference genes

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